Tomasz J. Nowakowski - Publications

University of California, San Francisco, San Francisco, CA 
cortex development, radial glia, microRNAs

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Bhaduri A, Andrews MG, Mancia Leon W, Jung D, Shin D, Allen D, Jung D, Schmunk G, Haeussler M, Salma J, Pollen AA, Nowakowski TJ, Kriegstein AR. Cell stress in cortical organoids impairs molecular subtype specification. Nature. PMID 31996853 DOI: 10.1038/s41586-020-1962-0  1
2020 Keefe MG, Nowakowski TJ. Evolutionary Expansion of Human Cerebellar Germinal Zones. Trends in Neurosciences. PMID 31954525 DOI: 10.1016/j.tins.2019.12.005  0.64
2019 Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Communications Biology. 2: 155. PMID 31925016 DOI: 10.1038/s42003-019-0411-9  0.52
2019 Cadwell CR, Bhaduri A, Mostajo-Radji MA, Keefe MG, Nowakowski TJ. Development and Arealization of the Cerebral Cortex. Neuron. 103: 980-1004. PMID 31557462 DOI: 10.1016/j.neuron.2019.07.009  0.64
2019 Andrews MG, Nowakowski TJ. Human brain development through the lens of cerebral organoid models. Brain Research. 1725: 146470. PMID 31542572 DOI: 10.1016/j.brainres.2019.146470  1
2019 Keefe MG, Nowakowski TJ. A recipe book for cell types in the human brain. Nature. 573: 36-37. PMID 31481767 DOI: 10.1038/d41586-019-02343-8  0.64
2019 Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Communications Biology. 2: 155. PMID 31069265 DOI: 10.1038/s42003-019-0411-9  0.52
2019 Mayer S, Chen J, Velmeshev D, Mayer A, Eze UC, Bhaduri A, Cunha CE, Jung D, Arjun A, Li E, Alvarado B, Wang S, Lovegren N, Gonzales ML, Szpankowski L, ... ... Nowakowski TJ, et al. Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. Neuron. PMID 30770253 DOI: 10.1016/j.neuron.2019.01.027  0.8
2019 Pollen AA, Bhaduri A, Andrews MG, Nowakowski TJ, Meyerson OS, Mostajo-Radji MA, Di Lullo E, Alvarado B, Bedolli M, Dougherty ML, Fiddes IT, Kronenberg ZN, Shuga J, Leyrat AA, West JA, et al. Establishing Cerebral Organoids as Models of Human-Specific Brain Evolution. Cell. 176: 743-756.e17. PMID 30735633 DOI: 10.1016/j.cell.2019.01.017  1
2019 Adorjan I, Tyler T, Bhaduri A, Demharter S, Finszter CK, Bako M, Sebok OM, Nowakowski TJ, Khodosevich K, Møllgård K, Kriegstein AR, Shi L, Hoerder-Suabedissen A, Ansorge O, Molnár Z. Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. Journal of Anatomy. PMID 30644551 DOI: 10.1111/joa.12931  0.8
2018 Nowakowski TJ, Rani N, Golkaram M, Zhou HR, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. Nature Neuroscience. PMID 30455455 DOI: 10.1038/s41593-018-0265-3  0.8
2018 Bhaduri A, Nowakowski TJ. Single-cell sequencing paints diverse pictures of the brain. Nature. 563: 38-39. PMID 30382219 DOI: 10.1038/d41586-018-07027-3  0.64
2018 Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage. Bmc Biology. 16: 113. PMID 30309354 DOI: 10.1186/s12915-018-0580-x  0.8
2018 Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Transcriptional fates of human-specific segmental duplications in brain. Genome Research. PMID 30228200 DOI: 10.1101/gr.237610.118  0.8
2018 Fiddes IT, Lodewijk GA, Mooring M, Bosworth CM, Ewing AD, Mantalas GL, Novak AM, van den Bout A, Bishara A, Rosenkrantz JL, Lorig-Roach R, Field AR, Haeussler M, Russo L, Bhaduri A, ... Nowakowski TJ, et al. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. Cell. 173: 1356-1369.e22. PMID 29856954 DOI: 10.1016/j.cell.2018.03.051  0.8
2018 Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, Layer RM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, ... ... Nowakowski TJ, et al. An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. Nature Genetics. PMID 29700473 DOI: 10.1038/s41588-018-0107-y  0.8
2017 Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, et al. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science (New York, N.Y.). 358: 1318-1323. PMID 29217575 DOI: 10.1126/science.aap8809  0.8
2017 Bershteyn M, Nowakowski TJ, Pollen AA, Di Lullo E, Nene A, Wynshaw-Boris A, Kriegstein AR. Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. Cell Stem Cell. PMID 28111201 DOI: 10.1016/j.stem.2016.12.007  0.8
2016 Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911847 DOI: 10.1073/pnas.1618029113  0.8
2016 Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Molecular Systems Biology. 12: 889. PMID 27888226  0.8
2016 Nowakowski TJ, Pollen AA, Sandoval-Espinosa C, Kriegstein AR. Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development. Neuron. 91: 1219-27. PMID 27657449 DOI: 10.1016/j.neuron.2016.09.005  0.8
2016 Rani N, Nowakowski TJ, Zhou H, Godshalk SE, Lisi V, Kriegstein AR, Kosik KS. A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA. Neuron. PMID 27263970 DOI: 10.1016/j.neuron.2016.05.005  0.8
2016 Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 27153637 DOI: 10.1093/bioinformatics/btw201  0.4
2016 Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology. 17: 67. PMID 27081004 DOI: 10.1186/s13059-016-0932-1  0.8
2016 Nowakowski TJ, Pollen AA, Di Lullo E, Sandoval-Espinosa C, Bershteyn M, Kriegstein AR. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. Cell Stem Cell. PMID 27038591 DOI: 10.1016/j.stem.2016.03.012  0.8
2015 Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Molecular Identity of Human Outer Radial Glia during Cortical Development. Cell. 163: 55-67. PMID 26406371 DOI: 10.1016/j.cell.2015.09.004  0.8
2015 Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz CC, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 16: 439-47. PMID 25800779 DOI: 10.1016/j.stem.2015.02.007  0.8
2014 Lui JH, Nowakowski TJ, Pollen AA, Javaherian A, Kriegstein AR, Oldham MC. Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. Nature. 515: 264-8. PMID 25391964 DOI: 10.1038/nature13973  0.8
2014 Pollen AA, Nowakowski TJ, Shuga J, Wang X, Leyrat AA, Lui JH, Li N, Szpankowski L, Fowler B, Chen P, Ramalingam N, Sun G, Thu M, Norris M, Lebofsky R, et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nature Biotechnology. 32: 1053-8. PMID 25086649 DOI: 10.1038/nbt.2967  0.8
2013 Nowakowski TJ, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ. Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis. Developmental Biology. 382: 530-7. PMID 24012747 DOI: 10.1016/j.ydbio.2013.08.023  0.8
2013 Nowakowski TJ, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ. MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 110: 7056-61. PMID 23569256 DOI: 10.1073/pnas.1219385110  0.8
2012 Pratt T, Davey JW, Nowakowski TJ, Raasumaa C, Rawlik K, McBride D, Clinton M, Mason JO, Price DJ. The expression and activity of β-catenin in the thalamus and its projections to the cerebral cortex in the mouse embryo. Bmc Neuroscience. 13: 20. PMID 22360971 DOI: 10.1186/1471-2202-13-20  0.8
2011 Nowakowski TJ, Mysiak KS, Pratt T, Price DJ. Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. Plos One. 6: e23013. PMID 21826226 DOI: 10.1371/journal.pone.0023013  0.8
2010 Quinn JC, Molinek M, Nowakowski TJ, Mason JO, Price DJ. Novel lines of Pax6-/- embryonic stem cells exhibit reduced neurogenic capacity without loss of viability. Bmc Neuroscience. 11: 26. PMID 20178645 DOI: 10.1186/1471-2202-11-26  0.8
2006 Lafong A, Hossack WJ, Arlt J, Nowakowski TJ, Read ND. Time-Multiplexed Laguerre-Gaussian holographic optical tweezers for biological applications. Optics Express. 14: 3065-72. PMID 19516447 DOI: 10.1364/OE.14.003065  0.8
2006 Lafong A, Hossack WJ, Arlt J, Nowakowski TJ, Read ND. Multiple trap Laguerre-Gaussian holographic optical tweezers using a multiplexed ferroelectric SLM Proceedings of Spie - the International Society For Optical Engineering. 6326. DOI: 10.1117/12.680583  0.8
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