Marc Vidal - Related publications

Harvard Medical School, Boston, MA, United States 
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34 most relevant papers in past 60 days:
Year Citation  Score
2022 Braberg H, Echeverria I, Kaake RM, Sali A, Krogan NJ. From systems to structure - using genetic data to model protein structures. Nature Reviews. Genetics. PMID 35013567 DOI: 10.1038/s41576-021-00441-w   
2022 Chen Q, Wei T. Membrane and Nuclear Yeast Two-Hybrid Systems. Methods in Molecular Biology (Clifton, N.J.). 2400: 93-104. PMID 34905194 DOI: 10.1007/978-1-0716-1835-6_10   
2022 Rojano E, Jabato FM, Perkins JR, Córdoba-Caballero J, García-Criado F, Sillitoe I, Orengo C, Ranea JAG, Seoane-Zonjic P. Assigning protein function from domain-function associations using DomFun. Bmc Bioinformatics. 23: 43. PMID 35033002 DOI: 10.1186/s12859-022-04565-6   
2022 Hussain S, Dong J, Ma X, Li J, Chen S, Clement A, Liu H. F-box only protein 9 and its role in cancer. Molecular Biology Reports. PMID 35025031 DOI: 10.1007/s11033-021-07057-7   
2022 Lu J, Zhang M, Liang H, Shen C, Zhang B, Liang B. Comparative proteomics and transcriptomics illustrate the allograft-induced stress response in the pearl oyster (Pinctada fucata martensii). Fish & Shellfish Immunology. PMID 34990804 DOI: 10.1016/j.fsi.2021.12.055   
2022 Zaidi S, Bhardwaj T, Somvanshi P, Khan AU. Proteomic Characterization and Target Identification Against Streptococcus mutans Under Bacitracin Stress Conditions Using LC-MS and Subtractive Proteomics. The Protein Journal. PMID 34989956 DOI: 10.1007/s10930-021-10038-1   
2022 Dhusia K, Madrid C, Su Z, Wu Y. EXCESP: A Structure-Based Online Database for Extracellular Interactome of Cell Surface Proteins in Humans. Journal of Proteome Research. PMID 34978816 DOI: 10.1021/acs.jproteome.1c00612   
2022 Benz C, Ali M, Krystkowiak I, Simonetti L, Sayadi A, Mihalic F, Kliche J, Andersson E, Jemth P, Davey NE, Ivarsson Y. Proteome-scale mapping of binding sites in the unstructured regions of the human proteome. Molecular Systems Biology. 18: e10584. PMID 35044719 DOI: 10.15252/msb.202110584   
2022 Chin AF, Wrabl JO, Hilser VJ. A thermodynamic atlas of proteomes reveals energetic innovation across the tree of life. Molecular Biology and Evolution. PMID 35038744 DOI: 10.1093/molbev/msac010   
2022 Butts M, Chu N. Utilizing a Baculovirus/Insect Cell Expression System and Expressed Protein Ligation (EPL) for Protein Semisynthesis. Current Protocols. 2: e348. PMID 35044726 DOI: 10.1002/cpz1.348   
2022 Cable J, Weber-Ban E, Clausen T, Walters KJ, Sharon M, Finley DJ, Gu Y, Hanna J, Feng Y, Martens S, Simonsen A, Hansen M, Zhang H, Goodwin JM, Reggio A, et al. Targeted protein degradation: from small molecules to complex organelles-a Keystone Symposia report. Annals of the New York Academy of Sciences. PMID 35000205 DOI: 10.1111/nyas.14745   
2022 Elbasani E, Njimbouom SN, Oh TJ, Kim EH, Lee H, Kim JD. GCRNN: graph convolutional recurrent neural network for compound-protein interaction prediction. Bmc Bioinformatics. 22: 616. PMID 35016607 DOI: 10.1186/s12859-022-04560-x   
2022 Jiang Z, Yang M, Cao Q, Zhang Y, Li D. A Powerful Method for Studying Protein-Protein Interactions in Plants: Coimmunoprecipitation (Co-IP) Assay. Methods in Molecular Biology (Clifton, N.J.). 2400: 87-92. PMID 34905193 DOI: 10.1007/978-1-0716-1835-6_9   
2022 Li R, Pu J, Cai Y, Zheng K, Qin X, Zhang Z, Xu X. Proteomic characteristics of PM-induced differentially expressed proteins in k-ras-silenced HBE cells. Toxicology Mechanisms and Methods. 1-17. PMID 35014587 DOI: 10.1080/15376516.2022.2028328   
2022 Coleman CS, Stanley BA, Lang CH. Enrichment of Newly Synthesized Proteins following treatment of C2C12 Myotubes with Endotoxin and Interferon-γ. Inflammation. PMID 35028803 DOI: 10.1007/s10753-022-01622-3   
2022 Fliege C, Ward RA, Vogel P, Nguyen H, Quach T, Guo M, Viana JPG, Dos Santos LB, Specht JE, Clemente TE, Hudson ME, Diers BW. Fine Mapping and Cloning of the Major Seed Protein QTL on Soybean Chromosome 20. The Plant Journal : For Cell and Molecular Biology. PMID 34978122 DOI: 10.1111/tpj.15658   
2022 Chen S, Liu Y, Zhang Y, Wierbowski SD, Lipkin SM, Wei X, Yu H. A full-proteome, interaction-specific characterization of mutational hotspots across human cancers. Genome Research. 32: 135-149. PMID 34963661 DOI: 10.1101/gr.275437.121   
2022 Wang S, Li J, Wang Y. M2PP: a novel computational model for predicting drug-targeted pathogenic proteins. Bmc Bioinformatics. 23: 7. PMID 34983358 DOI: 10.1186/s12859-021-04522-9   
2022 Li H, Yan Y, Zhao X, Huang SY. Inclusion of Desolvation Energy into Protein-Protein Docking through Atomic Contact Potentials. Journal of Chemical Information and Modeling. PMID 35068149 DOI: 10.1021/acs.jcim.1c01483   
2022 Rei Liao JY, Friso G, Forsythe ES, Michel EJS, Williams AM, Boguraev SS, Ponnala L, Sloan DB, van Wijk KJ. Proteomics, phylogenetics, and co-expression analyses indicate novel interactions in the plastid CLP chaperone-protease system. The Journal of Biological Chemistry. 101609. PMID 35065075 DOI: 10.1016/j.jbc.2022.101609   
2022 Jin M, Shan Y, Peng Y, Wang P, Li Q, Yu S, Zhang L, Xiao Y. An Integrative Analysis of Transcriptomics and Proteomics Reveals Novel Insights into the Response in the Midgut of Larvae to Vip3Aa. Toxins. 14. PMID 35051032 DOI: 10.3390/toxins14010055   
2022 Rodriguez JM, Pozo F, Cerdán-Vélez D, Di Domenico T, Vázquez J, Tress ML. APPRIS: selecting functionally important isoforms. Nucleic Acids Research. 50: D54-D59. PMID 34755885 DOI: 10.1093/nar/gkab1058   
2022 Charif SE, Vassallu MF, Salvañal L, Igaz LM. Protein synthesis modulation as a therapeutic approach for amyotrophic lateral sclerosis and frontotemporal dementia. Neural Regeneration Research. 17: 1423-1430. PMID 34916412 DOI: 10.4103/1673-5374.330593   
2022 Sharma KB, Aggarwal S, Yadav AK, Vrati S, Kalia M. Studying Autophagy Using a TMT-Based Quantitative Proteomics Approach. Methods in Molecular Biology (Clifton, N.J.). 2445: 183-203. PMID 34972993 DOI: 10.1007/978-1-0716-2071-7_12   
2022 Xavier LR, Almeida FA, Pinto VB, Passamani LZ, Santa-Catarina C, de Souza Filho GA, Mooney BP, Thelen JJ, Silveira V. Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus. Journal of Plant Physiology. 268: 153587. PMID 34906795 DOI: 10.1016/j.jplph.2021.153587   
2022 Wang H, Zheng H, Chen DZ. TANGO: A GO-term Embedding Based Method for Protein Semantic Similarity Prediction. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 35030084 DOI: 10.1109/TCBB.2022.3143480   
2022 Kushner JS, Liu G, Eisert RJ, Bradshaw GA, Pitt GS, Hinson JT, Kalocsay M, Marx SO. Detecting Cardiovascular Protein-Protein Interactions by Proximity Proteomics. Circulation Research. 130: 273-287. PMID 35050691 DOI: 10.1161/CIRCRESAHA.121.319810   
2022 Liang Y, Li Z. Split-Luciferase Complementation for Analysis of Virus-Host Protein Interactions. Methods in Molecular Biology (Clifton, N.J.). 2400: 55-62. PMID 34905190 DOI: 10.1007/978-1-0716-1835-6_6   
2022 Gu Y, Desai A, Corbett KD. Evolutionary Dynamics and Molecular Mechanisms of HORMA Domain Protein Signaling. Annual Review of Biochemistry. PMID 35041460 DOI: 10.1146/annurev-biochem-090920-103246   
2022 Cao H, Duncan O, Millar AH. Protein turnover in the developing Triticum aestivum grain. The New Phytologist. 233: 1188-1201. PMID 34846755 DOI: 10.1111/nph.17756   
2022 Vanderschuren K, Arranz-Gibert P, Khang M, Hadar D, Gaudin A, Yang F, Folta-Stogniew E, Saltzman WM, Amiram M, Isaacs FJ. Tuning protein half-life in mouse using sequence-defined biopolymers functionalized with lipids. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35046019 DOI: 10.1073/pnas.2103099119   
2022 Gomes Ramalli S, John Miles A, Janes RW, Wallace BA. The PCDDB (Protein Circular Dichroism Data Bank): A Bioinformatics Resource for Protein Characterisations and Methods Development. Journal of Molecular Biology. 167441. PMID 34999124 DOI: 10.1016/j.jmb.2022.167441   
2022 Floyd BM, Marcotte EM. Protein Sequencing, One Molecule at a Time. Annual Review of Biophysics. PMID 34985940 DOI: 10.1146/annurev-biophys-102121-103615   
2022 Elangovan A, Li Y, Pires DEV, Davis MJ, Verspoor K. Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. Bmc Bioinformatics. 23: 4. PMID 34983371 DOI: 10.1186/s12859-021-04504-x