| Year |
Citation |
Score |
| 2023 |
Méndez-González ID, Williams TM, Rebeiz M. Changes in locus wide repression underlie the evolution of Drosophila abdominal pigmentation. Plos Genetics. 19: e1010722. PMID 37134121 DOI: 10.1371/journal.pgen.1010722 |
0.427 |
|
| 2023 |
Weinstein ML, Jaenke CM, Asma H, Spangler M, Kohnen KA, Konys CC, Williams ME, Williams AV, Rebeiz M, Halfon MS, Williams TM. A novel role for trithorax in the gene regulatory network for a rapidly evolving fruit fly pigmentation trait. Plos Genetics. 19: e1010653. PMID 36795790 DOI: 10.1371/journal.pgen.1010653 |
0.486 |
|
| 2021 |
Finet C, Kassner VA, Carvalho AB, Chung H, Day JP, Day S, Delaney EK, De Ré FC, Dufour HD, Dupim E, Izumitani HF, Gautério TB, Justen J, Katoh T, Kopp A, ... ... Rebeiz M, et al. DrosoPhyla: resources for Drosophilid Phylogeny and Systematics. Genome Biology and Evolution. PMID 34343293 DOI: 10.1093/gbe/evab179 |
0.543 |
|
| 2021 |
Hughes JT, Williams ME, Rebeiz M, Williams TM. Widespread cis- and trans-regulatory evolution underlies the origin, diversification, and loss of a sexually dimorphic fruit fly pigmentation trait. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 34254440 DOI: 10.1002/jez.b.23068 |
0.474 |
|
| 2020 |
McQueen E, Rebeiz M. On the specificity of gene regulatory networks: How does network co-option affect subsequent evolution? Current Topics in Developmental Biology. 139: 375-405. PMID 32450967 DOI: 10.1016/Bs.Ctdb.2020.03.002 |
0.371 |
|
| 2020 |
Smith SJ, Davidson LA, Rebeiz M. Evolutionary expansion of apical extracellular matrix is required for the elongation of cells in a novel structure. Elife. 9. PMID 32338602 DOI: 10.7554/Elife.55965 |
0.331 |
|
| 2020 |
Camino EM, Weinstein ML, List MP, Vellky JE, Rebeiz M, Williams TM. Red Light/Green Light, a Dual Fluorescent Protein Reporter System To Study Enhancer-Promoter Specificity in . G3 (Bethesda, Md.). PMID 31900331 DOI: 10.1534/G3.119.401033 |
0.412 |
|
| 2020 |
Hughes JT, Williams ME, Johnson R, Grover S, Rebeiz M, Williams TM. Gene Regulatory Network Homoplasy Underlies Recurrent Sexually Dimorphic Fruit Fly Pigmentation Frontiers in Ecology and Evolution. 8. DOI: 10.3389/Fevo.2020.00080 |
0.502 |
|
| 2019 |
Vincent BJ, Rice GR, Wong GM, Glassford WJ, Downs KI, Shastay JL, Charles-Obi K, Natarajan M, Gogol M, Zeitlinger J, Rebeiz M. An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of . G3 (Bethesda, Md.). PMID 31619460 DOI: 10.1534/G3.119.400788 |
0.458 |
|
| 2019 |
Liu Y, Ramos-Womack M, Han C, Reilly P, Brackett KL, Rogers W, Williams TM, Andolfatto P, Stern DL, Rebeiz M. Changes throughout a Genetic Network Mask the Contribution of Hox Gene Evolution. Current Biology : Cb. PMID 31257142 DOI: 10.1016/J.Cub.2019.05.074 |
0.45 |
|
| 2019 |
Rice G, Rebeiz M. Evolution: How Many Phenotypes Do Regulatory Mutations Affect? Current Biology : Cb. 29: R21-R23. PMID 30620910 DOI: 10.1016/J.Cub.2018.11.027 |
0.359 |
|
| 2018 |
Smith SJ, Rebeiz M, Davidson L. From pattern to process: studies at the interface of gene regulatory networks, morphogenesis, and evolution. Current Opinion in Genetics & Development. 51: 103-110. PMID 30278289 DOI: 10.1016/J.Gde.2018.08.004 |
0.431 |
|
| 2018 |
Grover S, Williams ME, Kaiser R, Hughes JT, Gresham L, Rebeiz M, Williams TM. Augmentation of a wound response element accompanies the origin of a Hox-regulated Drosophila abdominal pigmentation trait. Developmental Biology. PMID 29981311 DOI: 10.1016/J.Ydbio.2018.07.001 |
0.527 |
|
| 2018 |
Roeske MJ, Camino EM, Grover S, Rebeiz M, Williams TM. Cis-regulatory evolution integrated the Bric-à-brac transcription factors into a novel fruit fly gene regulatory network. Elife. 7. PMID 29297463 DOI: 10.7554/Elife.32273 |
0.552 |
|
| 2017 |
Smith AF, Posakony JW, Rebeiz M. Automated tools for comparative sequence analysis of genic regions using the GenePalette application. Developmental Biology. PMID 28673819 DOI: 10.1016/J.Ydbio.2017.06.033 |
0.654 |
|
| 2017 |
Rebeiz M, Tsiantis M. Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development. 45: 115-123. PMID 28527813 DOI: 10.1016/J.Gde.2017.04.006 |
0.462 |
|
| 2017 |
Rebeiz M, Williams TM. Using Drosophila pigmentation traits to study the mechanisms of cis-regulatory evolution. Current Opinion in Insect Science. 19: 1-7. PMID 28521937 DOI: 10.1016/J.Cois.2016.10.002 |
0.493 |
|
| 2017 |
Pham T, Day SM, Glassford WJ, Williams TM, Rebeiz M. The evolutionary origination of a novel expression pattern through an extreme heterochronic shift. Evolution & Development. PMID 28116844 DOI: 10.1111/Ede.12215 |
0.525 |
|
| 2017 |
Roeske MJ, Camino EM, Grover S, Rebeiz M, Williams TM. Author response: Cis-regulatory evolution integrated the Bric-à-brac transcription factors into a novel fruit fly gene regulatory network Elife. DOI: 10.7554/Elife.32273.032 |
0.457 |
|
| 2016 |
Signor SA, Liu Y, Rebeiz M, Kopp A. Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila. Current Biology : Cb. PMID 27546578 DOI: 10.1016/J.Cub.2016.07.034 |
0.661 |
|
| 2015 |
Glassford WJ, Johnson WC, Dall NR, Smith SJ, Liu Y, Boll W, Noll M, Rebeiz M. Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty. Developmental Cell. PMID 26343453 DOI: 10.1016/J.Devcel.2015.08.005 |
0.451 |
|
| 2015 |
Johnson WC, Ordway AJ, Watada M, Pruitt JN, Williams TM, Rebeiz M. Genetic Changes to a Transcriptional Silencer Element Confers Phenotypic Diversity within and between Drosophila Species. Plos Genetics. 11: e1005279. PMID 26115430 DOI: 10.1371/Journal.Pgen.1005279 |
0.545 |
|
| 2015 |
Rebeiz M, Patel NH, Hinman VF. Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development. Annual Review of Genomics and Human Genetics. PMID 26079281 DOI: 10.1146/Annurev-Genom-091212-153423 |
0.451 |
|
| 2015 |
Camino EM, Butts JC, Ordway A, Vellky JE, Rebeiz M, Williams TM. The evolutionary origination and diversification of a dimorphic gene regulatory network through parallel innovations in cis and trans. Plos Genetics. 11: e1005136. PMID 25835988 DOI: 10.1371/Journal.Pgen.1005136 |
0.594 |
|
| 2014 |
Miller SW, Rebeiz M, Atanasov JE, Posakony JW. Neural precursor-specific expression of multiple Drosophila genes is driven by dual enhancer modules with overlapping function. Proceedings of the National Academy of Sciences of the United States of America. 111: 17194-9. PMID 25404315 DOI: 10.1073/Pnas.1415308111 |
0.704 |
|
| 2014 |
Ordway AJ, Hancuch KN, Johnson W, Wiliams TM, Rebeiz M. The expansion of body coloration involves coordinated evolution in cis and trans within the pigmentation regulatory network of Drosophila prostipennis. Developmental Biology. 392: 431-40. PMID 24907418 DOI: 10.1016/J.Ydbio.2014.05.023 |
0.547 |
|
| 2014 |
Rogers WA, Grover S, Stringer SJ, Parks J, Rebeiz M, Williams TM. A survey of the trans-regulatory landscape for Drosophila melanogaster abdominal pigmentation. Developmental Biology. 385: 417-32. PMID 24269556 DOI: 10.1016/J.Ydbio.2013.11.013 |
0.486 |
|
| 2013 |
Salomone JR, Rogers WA, Rebeiz M, Williams TM. The evolution of Bab paralog expression and abdominal pigmentation among Sophophora fruit fly species. Evolution & Development. 15: 442-57. PMID 24261445 DOI: 10.1111/Ede.12053 |
0.446 |
|
| 2013 |
Glassford WJ, Rebeiz M. Assessing constraints on the path of regulatory sequence evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20130026. PMID 24218638 DOI: 10.1098/Rstb.2013.0026 |
0.435 |
|
| 2013 |
Rogers WA, Salomone JR, Tacy DJ, Camino EM, Davis KA, Rebeiz M, Williams TM. Recurrent modification of a conserved cis-regulatory element underlies fruit fly pigmentation diversity. Plos Genetics. 9: e1003740. PMID 24009528 DOI: 10.1371/Journal.Pgen.1003740 |
0.52 |
|
| 2012 |
Rebeiz M, Castro B, Liu F, Yue F, Posakony JW. Ancestral and conserved cis-regulatory architectures in developmental control genes. Developmental Biology. 362: 282-94. PMID 22185795 DOI: 10.1016/J.Ydbio.2011.12.011 |
0.705 |
|
| 2011 |
Rebeiz M, Williams TM. Experimental approaches to evaluate the contributions of candidate cis-regulatory mutations to phenotypic evolution. Methods in Molecular Biology (Clifton, N.J.). 772: 351-75. PMID 22065449 DOI: 10.1007/978-1-61779-228-1_21 |
0.45 |
|
| 2011 |
Rebeiz M, Jikomes N, Kassner VA, Carroll SB. Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proceedings of the National Academy of Sciences of the United States of America. 108: 10036-43. PMID 21593416 DOI: 10.1073/Pnas.1105937108 |
0.713 |
|
| 2011 |
Rebeiz M, Miller SW, Posakony JW. Notch regulates numb: integration of conditional and autonomous cell fate specification. Development (Cambridge, England). 138: 215-25. PMID 21148185 DOI: 10.1242/Dev.050161 |
0.633 |
|
| 2009 |
Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB. Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science (New York, N.Y.). 326: 1663-7. PMID 20019281 DOI: 10.1126/Science.1178357 |
0.575 |
|
| 2009 |
Rebeiz M, Ramos-Womack M, Jeong S, Andolfatto P, Werner T, True J, Stern DL, Carroll SB. Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al. Cell. 139: 1189-96. PMID 20005811 DOI: 10.1016/J.Cell.2009.11.004 |
0.653 |
|
| 2008 |
Jeong S, Rebeiz M, Andolfatto P, Werner T, True J, Carroll SB. The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. Cell. 132: 783-93. PMID 18329365 DOI: 10.1016/J.Cell.2008.01.014 |
0.741 |
|
| 2005 |
Rebeiz M, Stone T, Posakony JW. An ancient transcriptional regulatory linkage. Developmental Biology. 281: 299-308. PMID 15893980 DOI: 10.1016/J.Ydbio.2005.03.004 |
0.709 |
|
| 2004 |
Everts-van der Wind A, Kata SR, Band MR, Rebeiz M, Larkin DM, Everts RE, Green CA, Liu L, Natarajan S, Goldammer T, Lee JH, McKay S, Womack JE, Lewin HA. A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Research. 14: 1424-37. PMID 15231756 DOI: 10.1101/Gr.2554404 |
0.361 |
|
| 2004 |
Rebeiz M, Posakony JW. GenePalette: a universal software tool for genome sequence visualization and analysis. Developmental Biology. 271: 431-8. PMID 15223345 DOI: 10.1016/J.Ydbio.2004.04.011 |
0.658 |
|
| 2004 |
Liu L, Gong G, Liu Y, Natarajan S, Larkin DM, Everts-van der Wind A, Rebeiz M, Beever JE. Multi-species comparative mapping in silico using the COMPASS strategy. Bioinformatics (Oxford, England). 20: 148-54. PMID 14734304 DOI: 10.1093/Bioinformatics/Bth018 |
0.348 |
|
| 2003 |
Larkin DM, Everts-van der Wind A, Rebeiz M, Schweitzer PA, Bachman S, Green C, Wright CL, Campos EJ, Benson LD, Edwards J, Liu L, Osoegawa K, Womack JE, de Jong PJ, Lewin HA. A cattle-human comparative map built with cattle BAC-ends and human genome sequence. Genome Research. 13: 1966-72. PMID 12902387 DOI: 10.1101/Gr.1560203 |
0.377 |
|
| 2003 |
Larson JH, Rebeiz MJ, Stiening CM, Windish RL, Beever JE, Lewin HA. MHC class I-like genes in cattle, MHCLA, with similarity to genes encoding NK cell stimulatory ligands. Immunogenetics. 55: 16-22. PMID 12679856 DOI: 10.1007/s00251-003-0551-3 |
0.356 |
|
| 2002 |
Rebeiz M, Reeves NL, Posakony JW. SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation. Proceedings of the National Academy of Sciences of the United States of America. 99: 9888-93. PMID 12107285 DOI: 10.1073/Pnas.152320899 |
0.711 |
|
| 2000 |
Band MR, Larson JH, Rebeiz M, Green CA, Heyen DW, Donovan J, Windish R, Steining C, Mahyuddin P, Womack JE, Lewin HA. An ordered comparative map of the cattle and human genomes. Genome Research. 10: 1359-68. PMID 10984454 DOI: 10.1101/Gr.145900 |
0.354 |
|
| 2000 |
Rebeiz M, Lewin HA. Compass of 47,787 cattle ESTs. Animal Biotechnology. 11: 75-241. PMID 10953882 DOI: 10.1080/10495390009525951 |
0.319 |
|
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