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Timothy S. Baker - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Macromolecular, cryoelectron microscopy and three-dimensional, image-reconstruction techniques.
Website:
http://www-chem.ucsd.edu/faculty/profiles/baker_timothy_s.html
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204 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Golub E, Subramanian RH, Esselborn J, Alberstein RG, Bailey JB, Chiong JA, Yan X, Booth T, Baker TS, Tezcan FA. Constructing protein polyhedra via orthogonal chemical interactions. Nature. PMID 31969701 DOI: 10.2210/Pdb6Ovh/Pdb  0.325
2019 Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N. Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA. Cell. 178: 612-623.e12. PMID 31348888 DOI: 10.1016/J.Cell.2019.06.035  0.314
2018 Subramanian RH, Smith SJ, Alberstein RG, Bailey JB, Zhang L, Cardone G, Suominen L, Chami M, Stahlberg H, Baker TS, Tezcan FA. Self-Assembly of a Designed Nucleoprotein Architecture through Multimodal Interactions. Acs Central Science. 4: 1578-1586. PMID 30555911 DOI: 10.1021/Acscentsci.8B00745  0.321
2018 Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, ... ... Baker TS, et al. Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization. Nature Microbiology. PMID 30397341 DOI: 10.1038/s41564-018-0275-7  0.4
2018 Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, ... ... Baker TS, et al. Discovery and structural characterization of a therapeutic antibody against coxsackievirus A10. Science Advances. 4: eaat7459. PMID 30255146 DOI: 10.2210/Pdb6Acw/Pdb  0.324
2018 Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Grieger J, Samulski RJ, Baker TS, Agbandje-McKenna M, Lyumkis D. Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant. Nature Communications. 9: 3628. PMID 30194371 DOI: 10.1038/S41467-018-06076-6  0.425
2018 McNulty R, Cardone G, Gilcrease EB, Baker TS, Casjens SR, Johnson JE. Cryo-EM Elucidation of the Structure of Bacteriophage P22 Virions after Genome Release. Biophysical Journal. 114: 1295-1301. PMID 29590587 DOI: 10.1016/J.Bpj.2018.01.026  0.422
2017 Pittman N, Misseldine A, Geilen L, Halder S, Smith JK, Kurian J, Chipman P, Janssen M, Mckenna R, Baker TS, D'Abramo A, Cotmore S, Tattersall P, Agbandje-McKenna M. Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction. Viruses. 9. PMID 29084163 DOI: 10.3390/V9110321  0.46
2017 Xu L, Zheng Q, Li S, He M, Wu Y, Li Y, Zhu R, Yu H, Hong Q, Jiang J, Li Z, Li S, Zhao H, Yang L, Hou W, ... ... Baker TS, et al. Atomic structures of Coxsackievirus A6 and its complex with a neutralizing antibody. Nature Communications. 8: 505. PMID 28894095 DOI: 10.1038/S41467-017-00477-9  0.33
2017 Mietzsch M, Kailasan S, Garrison J, Ilyas M, Chipman P, Kantola K, Janssen ME, Spear J, Sousa D, McKenna R, Brown K, Söderlund-Venermo M, Baker T, Agbandje-McKenna M. Structural insights into emerging pediatric pathogens human bocaparvoviruses. Journal of Virology. PMID 28331084 DOI: 10.1128/Jvi.00261-17  0.399
2017 Kurian JJ, Bennett A, Hull J, Janssen M, Baker T, McKenna R, Agbandje-McKenna M. Characterization of pH-dependent structural changes in adeno-associated virus by cryo-electron microscopy and three-dimensional image reconstruction Acta Crystallographica Section a Foundations and Advances. 73: a59-a59. DOI: 10.1107/S010876731709941X  0.429
2016 Drouin LM, Lins B, Janssen M, Bennett A, Chipman P, McKenna R, Chen W, Muzyczka N, Cardone G, Baker TS, Agbandje-McKenna M. Cryo-electron microscopy reconstruction and stability studies of Wild-Type and R432A Variant of AAV2 Reveals Capsid Structural Stability is a Major Factor in Genome Packaging. Journal of Virology. PMID 27440903 DOI: 10.1128/Jvi.00575-16  0.412
2016 Suzuki Y, Cardone G, Restrepo D, Zavattieri PD, Baker TS, Tezcan FA. Self-assembly of coherently dynamic, auxetic, two-dimensional protein crystals. Nature. PMID 27135928 DOI: 10.1038/Nature17633  0.311
2015 Jose J, Tang J, Taylor AB, Baker TS, Kuhn RJ. Fluorescent Protein-Tagged Sindbis Virus E2 Glycoprotein Allows Single Particle Analysis of Virus Budding from Live Cells. Viruses. 7: 6182-6199. PMID 26633461 DOI: 10.3390/V7122926  0.408
2015 Tseng YS, Gurda BL, Chipman P, McKenna R, Afione S, Chiorini JA, Muzyczka N, Olson NH, Baker TS, Kleinschmidt J, Agbandje-McKenna M. Adeno-associated virus serotype 1 (AAV1)- and AAV5-antibody complex structures reveal evolutionary commonalities in parvovirus antigenic reactivity. Journal of Virology. 89: 1794-808. PMID 25410874 DOI: 10.1128/Jvi.02710-14  0.396
2015 Janssen ME, Takagi Y, Parent KN, Cardone G, Nibert ML, Baker TS. Three-dimensional structure of a protozoal double-stranded RNA virus that infects the enteric pathogen Giardia lamblia. Journal of Virology. 89: 1182-94. PMID 25378500 DOI: 10.1128/Jvi.02745-14  0.434
2015 Jose J, Taylor AB, Kuhn RJ, Tang J, Baker TS. Supplementary Material: Fluorescent Protein‐Tagged Sindbis Virus E2 Glycoprotein Allows Single Particle Analysis of Virus Budding from Live Cells Viruses. 7: 6182-6199. DOI: 10.5281/Zenodo.34119  0.342
2014 Parent KN, Tang J, Cardone G, Gilcrease EB, Janssen ME, Olson NH, Casjens SR, Baker TS. Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain. Virology. 464: 55-66. PMID 25043589 DOI: 10.1016/J.Virol.2014.06.017  0.32
2014 Xiao X, Cheng J, Tang J, Fu Y, Jiang D, Baker TS, Ghabrial SA, Xie J. A novel partitivirus that confers hypovirulence on plant pathogenic fungi. Journal of Virology. 88: 10120-33. PMID 24965462 DOI: 10.1128/Jvi.01036-14  0.34
2014 Parent KN, Erb ML, Cardone G, Nguyen K, Gilcrease EB, Porcek NB, Pogliano J, Baker TS, Casjens SR. OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella. Molecular Microbiology. 92: 47-60. PMID 24673644 DOI: 10.1111/Mmi.12536  0.317
2014 Yan X, Cardone G, Zhang X, Zhou ZH, Baker TS. Single particle analysis integrated with microscopy: a high-throughput approach for reconstructing icosahedral particles. Journal of Structural Biology. 186: 8-18. PMID 24613762 DOI: 10.1016/J.Jsb.2014.02.016  0.377
2014 Tang J, Kearney BM, Wang Q, Doerschuk PC, Baker TS, Johnson JE. Dynamic and geometric analyses of Nudaurelia capensis ω virus maturation reveal the energy landscape of particle transitions. Journal of Molecular Recognition : Jmr. 27: 230-7. PMID 24591180 DOI: 10.1002/Jmr.2354  0.37
2013 Cardone G, Yan X, Sinkovits RS, Baker TS. A Real-Time 3D Reconstruction System for Screening Icosahedral Particles Under Different Conditions at the Microscope. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 19: 764-765. PMID 25242888 DOI: 10.1017/S1431927613005813  0.355
2013 Cardone G, Yan X, Sinkovits RS, Tang J, Baker TS. Three-dimensional reconstruction of icosahedral particles from single micrographs in real time at the microscope. Journal of Structural Biology. 183: 329-41. PMID 23891839 DOI: 10.1016/J.Jsb.2013.07.007  0.365
2013 Gurda BL, DiMattia MA, Miller EB, Bennett A, McKenna R, Weichert WS, Nelson CD, Chen WJ, Muzyczka N, Olson NH, Sinkovits RS, Chiorini JA, Zolotutkhin S, Kozyreva OG, Samulski RJ, ... Baker TS, et al. Capsid antibodies to different adeno-associated virus serotypes bind common regions. Journal of Virology. 87: 9111-24. PMID 23760240 DOI: 10.1128/Jvi.00622-13  0.343
2013 Parent KN, Takagi Y, Cardone G, Olson NH, Ericsson M, Yang M, Lee Y, Asara JM, Fichorova RN, Baker TS, Nibert ML. Structure of a protozoan virus from the human genitourinary parasite Trichomonas vaginalis. Mbio. 4. PMID 23549915 DOI: 10.1128/Mbio.00056-13  0.428
2013 Dunn SE, Li H, Cardone G, Nibert ML, Ghabrial SA, Baker TS. Three-dimensional structure of victorivirus HvV190S suggests coat proteins in most totiviruses share a conserved core. Plos Pathogens. 9: e1003225. PMID 23516364 DOI: 10.1371/Journal.Ppat.1003225  0.643
2013 Ghabrial SA, Dunn SE, Li H, Xie J, Baker TS. Viruses of Helminthosporium (Cochlioblus) victoriae. Advances in Virus Research. 86: 289-325. PMID 23498911 DOI: 10.1016/B978-0-12-394315-6.00011-8  0.577
2013 Nibert ML, Tang J, Xie J, Collier AM, Ghabrial SA, Baker TS, Tao YJ. 3D structures of fungal partitiviruses. Advances in Virus Research. 86: 59-85. PMID 23498903 DOI: 10.1016/B978-0-12-394315-6.00003-9  0.39
2013 Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F. Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. Plos Pathogens. 9: e1003132. PMID 23341770 DOI: 10.1371/Journal.Ppat.1003132  0.397
2013 Janssen M, Parent K, Takagi Y, Nibert M, Baker T. The Three-Dimensional Structure of Giardia lamblia Virus and its Comparison to Other Members of the Family Totiviridae Microscopy and Microanalysis. 19: 88-89. DOI: 10.1017/S1431927613002432  0.369
2012 Gurda BL, Raupp C, Popa-Wagner R, Naumer M, Olson NH, Ng R, McKenna R, Baker TS, Kleinschmidt JA, Agbandje-McKenna M. Mapping a neutralizing epitope onto the capsid of adeno-associated virus serotype 8. Journal of Virology. 86: 7739-51. PMID 22593150 DOI: 10.1128/Jvi.00218-12  0.424
2012 Parent KN, Deedas CT, Egelman EH, Casjens SR, Baker TS, Teschke CM. Stepwise molecular display utilizing icosahedral and helical complexes of phage coat and decoration proteins in the development of robust nanoscale display vehicles. Biomaterials. 33: 5628-37. PMID 22575828 DOI: 10.1016/J.Biomaterials.2012.04.026  0.367
2012 Brodin JD, Ambroggio XI, Tang C, Parent KN, Baker TS, Tezcan FA. Metal-directed, chemically tunable assembly of one-, two- and three-dimensional crystalline protein arrays. Nature Chemistry. 4: 375-82. PMID 22522257 DOI: 10.1038/Nchem.1290  0.33
2012 DiMattia MA, Nam HJ, Van Vliet K, Mitchell M, Bennett A, Gurda BL, McKenna R, Olson NH, Sinkovits RS, Potter M, Byrne BJ, Aslanidi G, Zolotukhin S, Muzyczka N, Baker TS, et al. Structural insight into the unique properties of adeno-associated virus serotype 9. Journal of Virology. 86: 6947-58. PMID 22496238 DOI: 10.1128/Jvi.07232-11  0.457
2012 Parent KN, Gilcrease EB, Casjens SR, Baker TS. Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures. Virology. 427: 177-88. PMID 22386055 DOI: 10.1016/J.Virol.2012.01.040  0.419
2012 Baker TS, Henderson R. Electron cryomicroscopy of biological macromolecules International Tables For Crystallography. DOI: 10.1107/97809553602060000872  0.411
2011 Dunn SE, Li H, Nibert ML, Ghabrial SA, Baker TS. Electron Cryo-Microscopy Studies of Helminthosporium victoriae Virus 190S. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 17: 134-135. PMID 25132801 DOI: 10.1017/S1431927611001541  0.642
2011 Tang J, Jose J, Chipman P, Zhang W, Kuhn RJ, Baker TS. Molecular links between the E2 envelope glycoprotein and nucleocapsid core in Sindbis virus. Journal of Molecular Biology. 414: 442-59. PMID 22001018 DOI: 10.1016/J.Jmb.2011.09.045  0.433
2011 Yan X, Parent KN, Goodman RP, Tang J, Shou J, Nibert ML, Duncan R, Baker TS. Virion structure of baboon reovirus, a fusogenic orthoreovirus that lacks an adhesion fiber. Journal of Virology. 85: 7483-95. PMID 21593159 DOI: 10.1128/Jvi.00729-11  0.403
2011 Tang J, Lander GC, Olia AS, Olia A, Li R, Casjens S, Prevelige P, Cingolani G, Baker TS, Johnson JE. Peering down the barrel of a bacteriophage portal: the genome packaging and release valve in p22. Structure (London, England : 1993). 19: 496-502. PMID 21439834 DOI: 10.1016/J.Str.2011.02.010  0.369
2011 Shen PS, Enderlein D, Nelson CD, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM. The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. Virology. 411: 142-52. PMID 21239031 DOI: 10.1016/J.Virol.2010.12.005  0.444
2011 Parent K, Sinkovits R, Casjens S, Baker T. Preliminary Studies of Bacteriophage Sf6 Virions: Icosahedral, Asymmetric, and Tomographic Reconstructions Microscopy and Microanalysis. 17: 98-99. DOI: 10.1017/S143192761100136X  0.338
2010 Parent KN, Sinkovits RS, Suhanovsky MM, Teschke CM, Egelman EH, Baker TS. Cryo-reconstructions of P22 polyheads suggest that phage assembly is nucleated by trimeric interactions among coat proteins. Physical Biology. 7: 045004. PMID 21149969 DOI: 10.1088/1478-3975/7/4/045004  0.417
2010 Tang J, Sinkovits RS, Baker TS. Three-dimensional asymmetric reconstruction of tailed bacteriophage. Methods in Enzymology. 482: 185-210. PMID 20888962 DOI: 10.1016/S0076-6879(10)82008-7  0.458
2010 Ng R, Govindasamy L, Gurda BL, McKenna R, Kozyreva OG, Samulski RJ, Parent KN, Baker TS, Agbandje-McKenna M. Structural characterization of the dual glycan binding adeno-associated virus serotype 6. Journal of Virology. 84: 12945-57. PMID 20861247 DOI: 10.1128/Jvi.01235-10  0.418
2010 Suhanovsky MM, Parent KN, Dunn SE, Baker TS, Teschke CM. Determinants of bacteriophage P22 polyhead formation: the role of coat protein flexibility in conformational switching. Molecular Microbiology. 77: 1568-82. PMID 20659287 DOI: 10.1111/J.1365-2958.2010.07311.X  0.575
2010 Tang J, Pan J, Havens WM, Ochoa WF, Guu TS, Ghabrial SA, Nibert ML, Tao YJ, Baker TS. Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling. Biophysical Journal. 99: 685-94. PMID 20643089 DOI: 10.1016/J.Bpj.2010.04.058  0.455
2010 Tang J, Ochoa WF, Li H, Havens WM, Nibert ML, Ghabrial SA, Baker TS. Structure of Fusarium poae virus 1 shows conserved and variable elements of partitivirus capsids and evolutionary relationships to picobirnavirus. Journal of Structural Biology. 172: 363-71. PMID 20599510 DOI: 10.1016/J.Jsb.2010.06.022  0.473
2010 Gurda BL, Parent KN, Bladek H, Sinkovits RS, DiMattia MA, Rence C, Castro A, McKenna R, Olson N, Brown K, Baker TS, Agbandje-McKenna M. Human bocavirus capsid structure: insights into the structural repertoire of the parvoviridae. Journal of Virology. 84: 5880-9. PMID 20375175 DOI: 10.1128/Jvi.02719-09  0.478
2010 Parent KN, Khayat R, Tu LH, Suhanovsky MM, Cortines JR, Teschke CM, Johnson JE, Baker TS. P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks. Structure (London, England : 1993). 18: 390-401. PMID 20223221 DOI: 10.1016/J.Str.2009.12.014  0.415
2010 Sinkovits RS, Baker TS. A tale of two symmetrons: rules for construction of icosahedral capsids from trisymmetrons and pentasymmetrons. Journal of Structural Biology. 170: 109-16. PMID 19963064 DOI: 10.1016/J.Jsb.2009.12.003  0.322
2009 Tang J, Lee KK, Bothner B, Baker TS, Yeager M, Johnson JE. Dynamics and stability in maturation of a T=4 virus. Journal of Molecular Biology. 392: 803-12. PMID 19627990 DOI: 10.1016/J.Jmb.2009.07.038  0.391
2009 Cherrier MV, Kostyuchenko VA, Xiao C, Bowman VD, Battisti AJ, Yan X, Chipman PR, Baker TS, Van Etten JL, Rossmann MG. An icosahedral algal virus has a complex unique vertex decorated by a spike. Proceedings of the National Academy of Sciences of the United States of America. 106: 11085-9. PMID 19541619 DOI: 10.1073/Pnas.0904716106  0.423
2009 Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, Havens WM, Nibert ML, Baker TS, Ghabrial SA, Tao YJ. Atomic structure reveals the unique capsid organization of a dsRNA virus. Proceedings of the National Academy of Sciences of the United States of America. 106: 4225-30. PMID 19246376 DOI: 10.1073/Pnas.0812071106  0.399
2009 Levy HC, Bowman VD, Govindasamy L, McKenna R, Nash K, Warrington K, Chen W, Muzyczka N, Yan X, Baker TS, Agbandje-McKenna M. Heparin binding induces conformational changes in Adeno-associated virus serotype 2. Journal of Structural Biology. 165: 146-56. PMID 19121398 DOI: 10.1016/J.Jsb.2008.12.002  0.42
2009 Yan X, Yu Z, Zhang P, Battisti AJ, Holdaway HA, Chipman PR, Bajaj C, Bergoin M, Rossmann MG, Baker TS. The capsid proteins of a large, icosahedral dsDNA virus. Journal of Molecular Biology. 385: 1287-99. PMID 19027752 DOI: 10.1016/J.Jmb.2008.11.002  0.446
2008 Tang J, Ochoa WF, Sinkovits RS, Poulos BT, Ghabrial SA, Lightner DV, Baker TS, Nibert ML. Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes. Proceedings of the National Academy of Sciences of the United States of America. 105: 17526-31. PMID 18981418 DOI: 10.1073/Pnas.0806724105  0.423
2008 Tang J, Olson N, Jardine PJ, Grimes S, Anderson DL, Baker TS. DNA poised for release in bacteriophage phi29. Structure (London, England : 1993). 16: 935-43. PMID 18547525 DOI: 10.1016/J.Str.2008.02.024  0.401
2008 Ochoa WF, Havens WM, Sinkovits RS, Nibert ML, Ghabrial SA, Baker TS. Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers. Structure (London, England : 1993). 16: 776-86. PMID 18462682 DOI: 10.1016/J.Str.2008.02.014  0.472
2007 Yan X, Sinkovits RS, Baker TS. AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles. Journal of Structural Biology. 157: 73-82. PMID 17029842 DOI: 10.1016/J.Jsb.2006.08.007  0.34
2007 Yan X, Dryden KA, Tang J, Baker TS. Ab initio random model method facilitates 3D reconstruction of icosahedral particles. Journal of Structural Biology. 157: 211-25. PMID 16979906 DOI: 10.1016/J.Jsb.2006.07.013  0.377
2006 Sherman MB, Guenther RH, Tama F, Sit TL, Brooks CL, Mikhailov AM, Orlova EV, Baker TS, Lommel SA. Removal of divalent cations induces structural transitions in red clover necrotic mosaic virus, revealing a potential mechanism for RNA release. Journal of Virology. 80: 10395-406. PMID 16920821 DOI: 10.1128/Jvi.01137-06  0.368
2006 Ji Y, Marinescu DC, Zhang W, Zhang X, Yan X, Baker TS. A model-based parallel origin and orientation refinement algorithm for cryoTEM and its application to the study of virus structures. Journal of Structural Biology. 154: 1-19. PMID 16459100 DOI: 10.1016/J.Jsb.2005.06.009  0.305
2006 Mukhopadhyay S, Zhang W, Gabler S, Chipman PR, Strauss EG, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG. Mapping the structure and function of the E1 and E2 glycoproteins in alphaviruses. Structure (London, England : 1993). 14: 63-73. PMID 16407066 DOI: 10.1016/J.Str.2005.07.025  0.351
2006 Baker TS, Henderson R. Chapter 19.6 Electron cryomicroscopy International Tables For Crystallography. DOI: 10.1107/97809553602060000703  0.411
2005 Zhang X, Ji Y, Zhang L, Harrison SC, Marinescu DC, Nibert ML, Baker TS. Features of reovirus outer capsid protein mu1 revealed by electron cryomicroscopy and image reconstruction of the virion at 7.0 Angstrom resolution. Structure (London, England : 1993). 13: 1545-57. PMID 16216585 DOI: 10.1016/J.Str.2005.07.012  0.676
2005 Zhang X, Tang J, Walker SB, O'Hara D, Nibert ML, Duncan R, Baker TS. Structure of avian orthoreovirus virion by electron cryomicroscopy and image reconstruction. Virology. 343: 25-35. PMID 16153672 DOI: 10.1016/J.Virol.2005.08.002  0.466
2005 Yan X, Chipman PR, Castberg T, Bratbak G, Baker TS. The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry. Journal of Virology. 79: 9236-43. PMID 15994818 DOI: 10.1128/Jvi.79.14.9236-9243.2005  0.465
2005 Padron E, Bowman V, Kaludov N, Govindasamy L, Levy H, Nick P, McKenna R, Muzyczka N, Chiorini JA, Baker TS, Agbandje-McKenna M. Structure of adeno-associated virus type 4. Journal of Virology. 79: 5047-58. PMID 15795290 DOI: 10.1128/Jvi.79.8.5047-5058.2005  0.46
2005 Zhang W, Heil M, Kuhn RJ, Baker TS. Heparin binding sites on Ross River virus revealed by electron cryo-microscopy. Virology. 332: 511-8. PMID 15680416 DOI: 10.1016/J.Virol.2004.11.043  0.411
2005 Baker TS, Zhang X, Tang J, Ji Y, Zhang L, Harrison SC, Marinescu DC, Nibert ML. Dissecting the Structure and Function of the Orthoreovirus μ1 (‘Penetrini’) Protein at 7.0–Å and Higher Resolution Microscopy and Microanalysis. 11. DOI: 10.1017/S1431927605509759  0.626
2005 Yan X, Chipman PR, Battisti AJ, Bergoin M, Rossmann MG, Baker TS. The structure of the T=147 iridovirus, CIV, at 13Å resolution Microscopy and Microanalysis. 11: 134-135. DOI: 10.1017/S1431927605500291  0.416
2005 Yan X, Bowman V, Olson NH, Gurnon JR, Etten JLV, Rossmann MG, Baker T. The Structure of a T=169d Algal Virus, PBCV-1, at 15Â Resolution Microscopy and Microanalysis. 11. DOI: 10.1017/S1431927605500266  0.424
2004 Zhang Y, Zhang W, Ogata S, Clements D, Strauss JH, Baker TS, Kuhn RJ, Rossmann MG. Conformational changes of the flavivirus E glycoprotein. Structure (London, England : 1993). 12: 1607-18. PMID 15341726 DOI: 10.1016/J.Str.2004.06.019  0.407
2004 Odegard AL, Chandran K, Zhang X, Parker JS, Baker TS, Nibert ML. Putative autocleavage of outer capsid protein micro1, allowing release of myristoylated peptide micro1N during particle uncoating, is critical for cell entry by reovirus. Journal of Virology. 78: 8732-45. PMID 15280481 DOI: 10.1128/Jvi.78.16.8732-8745.2004  0.369
2004 Kong Y, Zhang X, Baker TS, Ma J. A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps. Journal of Molecular Biology. 339: 117-30. PMID 15123425 DOI: 10.1016/J.Jmb.2004.03.038  0.309
2004 Singh V, Marinescu DC, Baker TS. Image segmentation for automatic particle identification in electron micrographs based on hidden Markov random field models and expectation maximization. Journal of Structural Biology. 145: 123-41. PMID 15065680 DOI: 10.1016/J.Jsb.2003.11.028  0.334
2004 Walters RW, Agbandje-McKenna M, Bowman VD, Moninger TO, Olson NH, Seiler M, Chiorini JA, Baker TS, Zabner J. Structure of adeno-associated virus serotype 5. Journal of Virology. 78: 3361-71. PMID 15016858 DOI: 10.1128/Jvi.78.7.3361-3371.2004  0.406
2004 Sherman MB, Orlova EV, Guenther RH, Lommel SA, Mikhailov AM, Baker TS. The structure of red clover necrotic mosaic dianthovirus at 10 Å resolution Microscopy and Microanalysis. 10: 1486-1487. DOI: 10.1017/S1431927604880103  0.368
2003 Zhang X, Walker SB, Chipman PR, Nibert ML, Baker TS. Reovirus polymerase lambda 3 localized by cryo-electron microscopy of virions at a resolution of 7.6 A. Nature Structural Biology. 10: 1011-8. PMID 14608373 DOI: 10.1038/Nsb1009  0.444
2003 Zhang W, Chipman PR, Corver J, Johnson PR, Zhang Y, Mukhopadhyay S, Baker TS, Strauss JH, Rossmann MG, Kuhn RJ. Visualization of membrane protein domains by cryo-electron microscopy of dengue virus. Nature Structural Biology. 10: 907-12. PMID 14528291 DOI: 10.1038/Nsb990  0.427
2003 Nibert ML, Baker TS. CPV, a stable and symmetrical machine for mRNA synthesis. Structure (London, England : 1993). 11: 605-7. PMID 12791245 DOI: 10.1016/S0969-2126(03)00099-6  0.376
2003 Zhang Y, Corver J, Chipman PR, Zhang W, Pletnev SV, Sedlak D, Baker TS, Strauss JH, Kuhn RJ, Rossmann MG. Structures of immature flavivirus particles. The Embo Journal. 22: 2604-13. PMID 12773377 DOI: 10.1093/Emboj/Cdg270  0.404
2003 Willits D, Zhao X, Olson N, Baker TS, Zlotnick A, Johnson JE, Douglas T, Young MJ. Effects of the cowpea chlorotic mottle bromovirus beta-hexamer structure on virion assembly. Virology. 306: 280-8. PMID 12642101 DOI: 10.1016/S0042-6822(02)00054-5  0.349
2003 Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker TS, Fane BA, Rossmann MG. Structural studies of bacteriophage alpha3 assembly. Journal of Molecular Biology. 325: 11-24. PMID 12473449 DOI: 10.1016/S0022-2836(02)01201-9  0.365
2003 Henderson R, Baker TS. Electron cryomicroscopy of biological macromolecules Burger's Medicinal Chemistry and Drug Discovery. DOI: 10.1002/0471266949.Bmc013  0.366
2002 Guasch A, Pous J, Ibarra B, Gomis-Rüth FX, Valpuesta JM, Sousa N, Carrascosa JL, Coll M, Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, ... ... Baker TS, et al. Note to the Paper by Guasch et al. (2002) Detailed Architecture of a DNA Translocating Machine: The High-resolution Structure of the Bacteriophage ϕ29 Connector Particle. Journal of Molecular Biology. 321: 379-380. PMID 25308998 DOI: 10.1016/S0022-2836(02)00614-9  0.307
2002 Bowman VD, Chase ES, Franz AW, Chipman PR, Zhang X, Perry KL, Baker TS, Smith TJ. An antibody to the putative aphid recognition site on cucumber mosaic virus recognizes pentons but not hexons. Journal of Virology. 76: 12250-8. PMID 12414964 DOI: 10.1128/Jvi.76.23.12250-12258.2002  0.401
2002 Nandhagopal N, Simpson AA, Gurnon JR, Yan X, Baker TS, Graves MV, Van Etten JL, Rossmann MG. The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proceedings of the National Academy of Sciences of the United States of America. 99: 14758-63. PMID 12411581 DOI: 10.1073/Pnas.232580699  0.479
2002 Zhang W, Mukhopadhyay S, Pletnev SV, Baker TS, Kuhn RJ, Rossmann MG. Placement of the structural proteins in Sindbis virus. Journal of Virology. 76: 11645-58. PMID 12388725 DOI: 10.1128/Jvi.76.22.11645-11658.2002  0.448
2002 He Y, Lin F, Chipman PR, Bator CM, Baker TS, Shoham M, Kuhn RJ, Medof ME, Rossmann MG. Structure of decay-accelerating factor bound to echovirus 7: a virus-receptor complex. Proceedings of the National Academy of Sciences of the United States of America. 99: 10325-9. PMID 12119400 DOI: 10.1073/Pnas.152161599  0.352
2002 Zhang W, Fisher BR, Olson NH, Strauss JH, Kuhn RJ, Baker TS. Aura virus structure suggests that the T=4 organization is a fundamental property of viral structural proteins. Journal of Virology. 76: 7239-46. PMID 12072523 DOI: 10.1128/Jvi.76.14.7239-7246.2002  0.428
2002 Luongo CL, Zhang X, Walker SB, Chen Y, Broering TJ, Farsetta DL, Bowman VD, Baker TS, Nibert ML. Loss of activities for mRNA synthesis accompanies loss of lambda2 spikes from reovirus cores: an effect of lambda2 on lambda1 shell structure. Virology. 296: 24-38. PMID 12036315 DOI: 10.1006/Viro.2001.1258  0.38
2002 Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, Jones CT, Mukhopadhyay S, Chipman PR, Strauss EG, Baker TS, Strauss JH. Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell. 108: 717-25. PMID 11893341 DOI: 10.1016/S0092-8674(02)00660-8  0.407
2002 Liemann S, Chandran K, Baker TS, Nibert ML, Harrison SC. Structure of the reovirus membrane-penetration protein, Mu1, in a complex with is protector protein, Sigma3. Cell. 108: 283-95. PMID 11832217 DOI: 10.1016/S0092-8674(02)00612-8  0.628
2002 Bowman VD, Chipman PR, Smith TJ, Chase ES, Franz AWE, Perry KL, Baker TS. Cucumber mosaic virus-fab complex examined by electron cryo-microscopy and three-dimensional image reconstruction Microscopy and Microanalysis. 8: 852-853. DOI: 10.1017/S1431927602102741  0.426
2002 Zhang X, Walker SB, Nibert ML, Baker TS. Structure of the human reovirus virion at 9.6Å resolution Microscopy and Microanalysis. 8: 846-847. DOI: 10.1017/S1431927602102716  0.396
2002 Xiao C, Bator CM, Chipman P, Baker TS, Kuhn RJ, Wimmer E, Craig A, Rossmann MG. Pseudo-atomic structure of coxsackievirus A21 complexed with its cellular receptor, ICAM-1 Microscopy and Microanalysis. 8: 822-823. DOI: 10.1017/S1431927602102467  0.39
2002 Zhang W, Mukhopadhyay S, Pletnev SV, Kuhn RJ, Rossmann MG, Baker TS. Sindbis virus reconstruction at 11Å Resolution Reveals Details of Glycoprotein and Nucleocapsid Organization Microscopy and Microanalysis. 8: 208-209. DOI: 10.1017/S1431927602100043  0.391
2001 He Y, Chipman PR, Howitt J, Bator CM, Whitt MA, Baker TS, Kuhn RJ, Anderson CW, Freimuth P, Rossmann MG. Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor. Nature Structural Biology. 8: 874-8. PMID 11573093 DOI: 10.1038/Nsb1001-874  0.348
2001 Morais MC, Tao Y, Olson NH, Grimes S, Jardine PJ, Anderson DL, Baker TS, Rossmann MG. Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29. Journal of Structural Biology. 135: 38-46. PMID 11562164 DOI: 10.1006/Jsbi.2001.4379  0.378
2001 Chandran K, Zhang X, Olson NH, Walker SB, Chappell JD, Dermody TS, Baker TS, Nibert ML. Complete in vitro assembly of the reovirus outer capsid produces highly infectious particles suitable for genetic studies of the receptor-binding protein. Journal of Virology. 75: 5335-42. PMID 11333914 DOI: 10.1128/Jvi.75.11.5335-5342.2001  0.387
2001 Pletnev SV, Zhang W, Mukhopadhyay S, Fisher BR, Hernandez R, Brown DT, Baker TS, Rossmann MG, Kuhn RJ. Locations of carbohydrate sites on alphavirus glycoproteins show that E1 forms an icosahedral scaffold. Cell. 105: 127-36. PMID 11301008 DOI: 10.1016/S0092-8674(01)00302-6  0.305
2001 Zhang W, Olson NH, Baker TS, Faulkner L, Agbandje-McKenna M, Boulton MI, Davies JW, McKenna R. Structure of the Maize streak virus geminate particle. Virology. 279: 471-7. PMID 11162803 DOI: 10.1006/Viro.2000.0739  0.422
2001 Olson NH, Gingery M, Eiserling FA, Baker TS. The structure of isometric capsids of bacteriophage T4. Virology. 279: 385-91. PMID 11162794 DOI: 10.1006/Viro.2000.0735  0.406
2001 Xiao C, Bator CM, Bowman VD, Rieder E, He Y, Hébert B, Bella J, Baker TS, Wimmer E, Kuhn RJ, Rossmann MG. Interaction of coxsackievirus A21 with its cellular receptor, ICAM-1. Journal of Virology. 75: 2444-51. PMID 11160747 DOI: 10.1128/Jvi.75.5.2444-2451.2001  0.382
2001 Yan X, Chipman P, Castberg T, Bratbak G, Baker TS. The Structure of Ppv0l, A Marine Algal Virus with a T=219 Capsid Microscopy and Microanalysis. 7: 748-749. DOI: 10.1017/S1431927600029810  0.371
2001 Yan X, Bowman V, Murti G, Goorha R, Hyatt A, Baker TS. 3d Image Reconstruction of Frog Virus 3 At 2.6nm Microscopy and Microanalysis. 7: 746-747. DOI: 10.1017/S1431927600029809  0.37
2000 Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG. Structure of the bacteriophage phi29 DNA packaging motor. Nature. 408: 745-50. PMID 11130079 DOI: 10.1038/35047129  0.314
2000 Rossmann MG, Bella J, Kolatkar PR, He Y, Wimmer E, Kuhn RJ, Baker TS. Cell recognition and entry by rhino- and enteroviruses. Virology. 269: 239-47. PMID 10753702 DOI: 10.1006/Viro.2000.0258  0.343
2000 Yan X, Olson NH, Van Etten JL, Bergoin M, Rossmann MG, Baker TS. Structure and assembly of large lipid-containing dsDNA viruses. Nature Structural Biology. 7: 101-3. PMID 10655609 DOI: 10.1038/72360  0.492
2000 He Y, Bowman VD, Mueller S, Bator CM, Bella J, Peng X, Baker TS, Wimmer E, Kuhn RJ, Rossmann MG. Interaction of the poliovirus receptor with poliovirus. Proceedings of the National Academy of Sciences of the United States of America. 97: 79-84. PMID 10618374 DOI: 10.1073/Pnas.97.1.79  0.337
2000 Baker TS, Olson NH, Gingery M, Eiserling FA. Three-Dimensional Structure of Isometric Capsids of Bacteriophage T4 Microscopy and Microanalysis. 6: 254-255. DOI: 10.1017/S1431927600033766  0.321
1999 Baker TS, Olson NH, Fuller SD. Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiology and Molecular Biology Reviews : Mmbr. 63: 862-922, table of co. PMID 10585969 DOI: 10.1128/Mmbr.64.1.237-237.2000  0.444
1999 Krol MA, Olson NH, Tate J, Johnson JE, Baker TS, Ahlquist P. RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. Proceedings of the National Academy of Sciences of the United States of America. 96: 13650-5. PMID 10570127 DOI: 10.1073/Pnas.96.24.13650  0.391
1999 Kolatkar PR, Bella J, Olson NH, Bator CM, Baker TS, Rossmann MG. Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor. The Embo Journal. 18: 6249-59. PMID 10562537 DOI: 10.1093/Emboj/18.22.6249  0.411
1999 McKenna R, Olson NH, Chipman PR, Baker TS, Booth TF, Christensen J, Aasted B, Fox JM, Bloom ME, Wolfinbarger JB, Agbandje-McKenna M. Three-dimensional structure of Aleutian mink disease parvovirus: implications for disease pathogenicity. Journal of Virology. 73: 6882-91. PMID 10400786 DOI: 10.1128/Jvi.73.8.6882-6891.1999  0.449
1999 Smith TJ, Baker T. Picornaviruses: epitopes, canyons, and pockets Advances in Virus Research. 52: 1-23. PMID 10384234 DOI: 10.1016/S0065-3527(08)60297-3  0.37
1999 Sosinsky GE, Baker TS, Hand G, Ellisman MH. The Electron Microscopy Outreach Program: A Web-based resource for research and education. Journal of Structural Biology. 125: 246-52. PMID 10222281 DOI: 10.1006/Jsbi.1998.4079  0.325
1999 Belnap DM, Kumar A, Folk JT, Smith TJ, Baker TS. Low-resolution density maps from atomic models: how stepping "back" can be a step "forward". Journal of Structural Biology. 125: 166-75. PMID 10222272 DOI: 10.1006/Jsbi.1999.4093  0.391
1999 Chandran K, Walker SB, Chen Y, Contreras CM, Schiff LA, Baker TS, Nibert ML. In vitro recoating of reovirus cores with baculovirus-expressed outer-capsid proteins mu1 and sigma3. Journal of Virology. 73: 3941-50. PMID 10196289 DOI: 10.1128/Jvi.73.5.3941-3950.1999  0.357
1999 Jané-Valbuena J, Nibert ML, Spencer SM, Walker SB, Baker TS, Chen Y, Centonze VE, Schiff LA. Reovirus virion-like particles obtained by recoating infectious subvirion particles with baculovirus-expressed sigma3 protein: an approach for analyzing sigma3 functions during virus entry. Journal of Virology. 73: 2963-73. PMID 10074146 DOI: 10.1128/Jvi.73.4.2963-2973.1999  0.431
1999 Zhang W, Olson NH, Chipman PR, McKenna R, Baker TS. The Structure of Maize Streak Virus: Are Two Heads Better Than One? Microscopy and Microanalysis. 5: 1132-1133. DOI: 10.1017/S1431927600018985  0.396
1998 Simpson AA, Chipman PR, Baker TS, Tijssen P, Rossmann MG. The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 A resolution. Structure (London, England : 1993). 6: 1355-67. PMID 9817847 DOI: 10.1016/S0969-2126(98)00136-1  0.452
1998 Tao Y, Olson NH, Xu W, Anderson DL, Rossmann MG, Baker TS. Assembly of a tailed bacterial virus and its genome release studied in three dimensions. Cell. 95: 431-7. PMID 9814712 DOI: 10.1016/S0092-8674(00)81773-0  0.375
1998 Dryden KA, Farsetta DL, Wang G, Keegan JM, Fields BN, Baker TS, Nibert ML. Internal structures containing transcriptase-related proteins in top component particles of mammalian orthoreovirus Virology. 245: 33-46. PMID 9614865 DOI: 10.1006/Viro.1998.9146  0.405
1998 Fox JM, Wang G, Speir JA, Olson NH, Johnson JE, Baker TS, Young MJ. Comparison of the native CCMV virion with in vitro assembled CCMV virions by cryoelectron microscopy and image reconstruction Virology. 244: 212-218. PMID 9581792 DOI: 10.1006/Viro.1998.9107  0.396
1998 Che Z, Olson NH, Leippe D, Lee WM, Mosser AG, Rueckert RR, Baker TS, Smith TJ. Antibody-mediated neutralization of human rhinovirus 14 explored by means of cryoelectron microscopy and X-ray crystallography of virus-Fab complexes. Journal of Virology. 72: 4610-22. PMID 9573224 DOI: 10.1128/Jvi.72.6.4610-4622.1998  0.34
1998 Chipman PR, Agbandje-McKenna M, Renaudin J, Baker TS, McKenna R. Structural analysis of the spiroplasma virus, SpV4: Implications for evolutionary variation to obtain host diversity among the Microviridae Structure. 6: 135-145. PMID 9519405 DOI: 10.1016/S0969-2126(98)00016-1  0.476
1998 Yan X, Olson NH, Etten JLV, Baker TS. Cryo-Electron Microscopy and Image Reconstruction of PBCV-1, an ALGAL Virus with T=169, Icosahedral Lattice Symmetry Microscopy and Microanalysis. 4: 948-949. DOI: 10.1017/S1431927600024867  0.418
1998 Zhang W, Olson NH, McKinney BR, Kuhn RJ, Baker TS. Cryo-Electron Microscopy of Aura Viruses Microscopy and Microanalysis. 4: 946-947. DOI: 10.1017/S1431927600024855  0.351
1997 Boier Martin IM, Marinescu DC, Lynch RE, Baker TS. Identification of spherical virus particles in digitized images of entire electron micrographs Journal of Structural Biology. 120: 146-157. PMID 9417979 DOI: 10.1006/Jsbi.1997.3901  0.362
1997 Spencer SM, Sgro JY, Dryden KA, Baker TS, Nibert ML. IRIS explorer software for radial-depth cueing reovirus particles and other macromolecular structures determined by cryoelectron microscopy and image reconstruction. Journal of Structural Biology. 120: 11-21. PMID 9361260 DOI: 10.1006/Jsbi.1997.3902  0.419
1997 Belnap DM, Olson NH, Baker TS. A method for establishing the handedness of biological macromolecules Journal of Structural Biology. 120: 44-51. PMID 9356290 DOI: 10.1006/Jsbi.1997.3896  0.373
1997 Luongo CL, Dryden KA, Farsetta DL, Margraf RL, Severson TF, Olson NH, Fields BN, Baker TS, Nibert ML. Localization of a C-terminal region of λ2 protein in reovirus cores Journal of Virology. 71: 8035-8040. PMID 9311901 DOI: 10.1128/Jvi.71.10.8035-8040.1997  0.345
1997 Kumar A, Reddy VS, Yusibov V, Chipman PR, Hata Y, Fita I, Fukuyama K, Rossmann MG, Loesch-Fries LS, Baker TS, Johnson JE. The structure of alfalfa mosaic virus capsid protein assembled as a T=1 icosahedral particle at 4.0-A resolution. Journal of Virology. 71: 7911-6. PMID 9311881 DOI: 10.1128/Jvi.71.10.7911-7916.1997  0.446
1997 Wikoff WR, Tsai CJ, Wang G, Baker TS, Johnson JE. The structure of cucumber mosaic virus: Cryoelectron microscopy, X-ray crystallography, and sequence analysis Virology. 232: 91-97. PMID 9185592 DOI: 10.1006/Viro.1997.8543  0.464
1997 Stoops JK, Cheng RH, Yazdi MA, Maeng CY, Schroeter JP, Klueppelberg U, Kolodziej SJ, Baker TS, Reed LJ. On the unique structural organization of the Saccharomyces cerevisiae pyruvate dehydrogenase complex. The Journal of Biological Chemistry. 272: 5757-64. PMID 9038189 DOI: 10.1017/S1431927600024892  0.302
1997 Chipman PR, Mckenna R, Renaudin J, Baker TS. Cryo-Electron Microscopy of Spiroplasma Virus SpV4 Microscopy and Microanalysis. 3: 87-88. DOI: 10.1017/S1431927600007327  0.379
1996 Baker TS, Johnson JE. Low resolution meets high: Towards a resolution continuum from cells to atoms Current Opinion in Structural Biology. 6: 585-594. PMID 8913679 DOI: 10.1016/S0959-440X(96)80023-6  0.311
1996 Smith TJ, Chase ES, Schmidt TJ, Olson NH, Baker TS. Neutralizing antibody to human rhinovirus 14 penetrates the receptor- binding canyon Nature. 383: 350-354. PMID 8848050 DOI: 10.1038/383350A0  0.359
1996 Chipman PR, Agbandje-Mckenna M, Kajigaya S, Brown KE, Young NS, Baker TS, Rossmann MG. Cryo-electron microscopy studies of empty capsids of human parvovirus B19 complexed with its cellular receptor Proceedings of the National Academy of Sciences of the United States of America. 93: 7502-7506. PMID 8755503 DOI: 10.1073/Pnas.93.15.7502  0.398
1996 Baker TS, Cheng RH. A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy Journal of Structural Biology. 116: 120-130. PMID 8742733 DOI: 10.1006/Jsbi.1996.0020  0.381
1996 Fuller SD, Butcher SJ, Cheng RH, Baker TS. Three-dimensional reconstruction of icosahedral particles--the uncommon line. Journal of Structural Biology. 116: 48-55. PMID 8742722 DOI: 10.1006/Jsbi.1996.0009  0.376
1996 Belnap DM, Olson NH, Cladel NM, Newcomb WW, Brown JC, Kreider JW, Christensen ND, Baker TS. Conserved features in papillomavirus and polyomavirus capsids. Journal of Molecular Biology. 259: 249-63. PMID 8656427 DOI: 10.1006/Jmbi.1996.0317  0.385
1996 Smith TJ, Chase ES, Schmidt T, Olson NH, Baker TS. The structure of intact human rhinovirus 14 complexed with Fab17-IA Acta Crystallographica Section a Foundations of Crystallography. 52: C179-C179. DOI: 10.1107/S0108767396092148  0.308
1995 Zhao X, Fox JM, Olson NH, Baker TS, Young MJ. In vitro assembly of cowpea chlorotic mottle virus from coat protein expressed in Escherichia coli and in vitro-transcribed viral cDNA Virology. 207: 486-494. PMID 7886952 DOI: 10.1006/Viro.1995.1108  0.4
1995 Holland Cheng R, Kuhn RJ, Olson NH, Rossmann^Hok-Kin Choi MG, Smith TJ, Baker TS. Nucleocapsid and glycoprotein organization in an enveloped virus Cell. 80: 621-630. PMID 7867069 DOI: 10.1016/0092-8674(95)90516-2  0.435
1995 Speir JA, Munshi S, Wang G, Baker TS, Johnson JE. Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy Structure. 3: 63-78. PMID 7743132 DOI: 10.1016/S0969-2126(01)00135-6  0.465
1995 Ilag LL, Olson NH, Dokland T, Music CL, Cheng RH, Bowen Z, McKenna R, Rossmann MG, Baker TS, Incardona NL. DNA packaging intermediates of bacteriophage φX174 Structure. 3: 353-363. PMID 7613866 DOI: 10.1016/S0969-2126(01)00167-8  0.431
1995 Smith TJ, Cheng RH, Olson NH, Peterson P, Chase E, Kuhn RJ, Baker TS. Putative receptor binding sites on alphaviruses as visualized by cryoelectron microscopy Proceedings of the National Academy of Sciences of the United States of America. 92: 10648-10652. PMID 7479858 DOI: 10.1073/Pnas.92.23.10648  0.38
1995 Smith TJ, Mosser AG, Baker TS. Structural studies on the mechanisms of antibody-mediated neutralization of human rhinovirus Seminars in Virology. 6: 233-242. DOI: 10.1006/Smvy.1995.0028  0.325
1994 Hagensee ME, Olson NH, Baker TS, Galloway DA. Three-dimensional structure of vaccinia virus-produced human papillomavirus type 1 capsids Journal of Virology. 68: 4503-4505. PMID 8207824  0.326
1994 Yeager M, Berriman JA, Baker TS, Bellamy AR. Three-dimensional structure of the rotavirus haemagglutinin VP4 by cryo-electron microscopy and difference map analysis Embo Journal. 13: 1011-1018. PMID 8131735 DOI: 10.1002/J.1460-2075.1994.Tb06349.X  0.446
1994 Cheng RH, Reddy VS, Olson NH, Fisher AJ, Baker TS, Johnson JE. Functional implications of quasi-equivalence in a T = 3 icosahedral animal virus established by cryo-electron microscopy and X-ray crystallography. Structure (London, England : 1993). 2: 271-82. PMID 8087554 DOI: 10.1016/S0969-2126(00)00029-0  0.449
1994 Johnson JE, Munshi S, Liljas L, Agrawal D, Olson NH, Reddy V, Fisher A, McKinney B, Schmidt T, Baker TS. Comparative studies of T = 3 and T = 4 icosahedral RNA insect viruses Archives of Virology. Supplementum. 9: 497-512. PMID 8032278 DOI: 10.1007/978-3-7091-9326-6_48  0.33
1994 Liu H, Smith TJ, Lee WM, Mosser AG, Rueckert RR, Olson NH, Cheng RH, Baker TS. Structure determination of an Fab fragment that neutralizes human rhinovirus 14 and analysis of the Fab-virus complex Journal of Molecular Biology. 240: 127-137. PMID 8027997 DOI: 10.1006/Jmbi.1994.1427  0.449
1994 Cramer WA, Martinez SE, Huang D, Tae GS, Everly RM, Heymann JB, Cheng RH, Baker TS, Smith JL. Structural aspects of the cytochrome b6f complex; structure of the lumen-side domain of cytochrome f Journal of Bioenergetics and Biomembranes. 26: 31-47. PMID 8027021 DOI: 10.1007/Bf00763218  0.559
1994 Cheng RH, Caston JR, Wang GJ, Gu F, Smith TJ, Baker TS, Bozarth RF, Trus BL, Cheng N, Wickner RB, Steven AC. Fungal virus capsids, cytoplasmic compartments for the replication of double-stranded RNA, formed as icosahedral shells of asymmetric gag dimers Journal of Molecular Biology. 244: 255-258. PMID 7966336 DOI: 10.1006/Jmbi.1994.1726  0.44
1994 Porta C, Wang G, Cheng H, Chen Z, Baker TS, Johnson JE. Direct Imaging of Interactions between an Icosahedral Virus and Conjugate Fab Fragments by Cryoelectron Microscopy and X-Ray Crystallography Virology. 204: 777-788. PMID 7941346 DOI: 10.1006/Viro.1994.1593  0.33
1994 Rossmann MG, Olson NH, Kolatkar PR, Oliveira MA, Cheng RH, Greve JM, McClelland A, Baker TS. Crystallographic and cryo EM analysis of virion-receptor interactions. Archives of Virology. Supplementum. 9: 531-41. PMID 7913361 DOI: 10.1007/978-3-7091-9326-6_51  0.39
1994 Wikoff WR, Wang G, Parrish CR, Cheng RH, Strassheim ML, Baker TS, Rossmann MG. The structure of a neutralized virus: canine parvovirus complexed with neutralizing antibody fragment Structure. 2: 595-607. PMID 7522904 DOI: 10.1016/S0969-2126(00)00062-9  0.439
1993 Belnap DM, Grochulski WD, Olson NH, Baker TS. Use of radial density plots to calibrate image magnification for frozen-hydrated specimens Ultramicroscopy. 48: 347-358. PMID 8475599 DOI: 10.1016/0304-3991(93)90110-J  0.384
1993 Speir JA, Munshi S, Baker TS, Johnson JE. Preliminary X-ray data analysis of crystalline cowpea chlorotic mottle virus Virology. 193: 234-241. PMID 8438568 DOI: 10.1006/Viro.1993.1119  0.361
1993 Dryden KA, Wang G, Yeager M, Nibert ML, Coombs KM, Furlong DB, Fields BN, Baker TS. Early steps in reovirus infection are associated with dramatic changes in supramolecular structure and protein conformation: Analysis of virions and subviral particles by cryoelectron microscopy and image reconstruction Journal of Cell Biology. 122: 1023-1041. PMID 8394844 DOI: 10.1083/Jcb.122.5.1023  0.456
1993 Smith TJ, Olson NH, Cheng RH, Chase ES, Baker TS. Structure of a human rhinovirus-bivalently bound antibody complex: Implications for viral neutralization and antibody flexibility Proceedings of the National Academy of Sciences of the United States of America. 90: 7015-7018. PMID 8394005 DOI: 10.1073/Pnas.90.15.7015  0.381
1993 Olson NH, Kolatkar PR, Oliveira MA, Cheng RH, Greve JM, McClelland A, Baker TS, Rossmann MG. Structure of a human rhinovirus complexed with its receptor molecule. Proceedings of the National Academy of Sciences of the United States of America. 90: 507-11. PMID 8093643 DOI: 10.1093/Protein/6.Supplement.1  0.373
1993 Smith TJ, Olson NH, Cheng RH, Liu H, Chase ES, Lee WM, Leippe DM, Mosser AG, Rueckert RR, Baker TS. Structure of human rhinovirus complexed with Fab fragments from a neutralizing antibody Journal of Virology. 67: 1148-1158. PMID 7679742 DOI: 10.1128/Jvi.67.3.1148-1158.1993  0.396
1993 Olson NH, Baker TS, Willingmann P, Incardona NL. The three-dimensional structure of frozen-hydrated bacteriophage phi X174. Journal of Structural Biology. 108: 168-75. PMID 1486007 DOI: 10.1016/1047-8477(92)90016-4  0.404
1993 Rossmann MG, Kolatkar PR, Oliveira MA, Zhao R, Baker TS, Olson NH, Cheng RH, Greve JM. Virus structure and virus infectivity Acta Crystallographica Section a Foundations of Crystallography. 49: c3-c3. DOI: 10.1107/S0108767378099912  0.372
1992 Cheng RH, Olson NH, Baker TS. Cauliflower mosaic virus: a 420 subunit (T = 7), multilayer structure. Virology. 186: 655-68. PMID 1733107 DOI: 10.1016/0042-6822(92)90032-K  0.457
1992 Wang GJ, Porta C, Chen ZG, Baker TS, Johnson JE. Identification of a Fab interaction footprint site on an icosahedral virus by cryoelectron microscopy and X-ray crystallography. Nature. 355: 275-8. PMID 1731227 DOI: 10.1038/355275A0  0.425
1992 McKenna R, Xia D, Willingmann P, Ilag LL, Krishnaswamy S, Rossmann MG, Olson NH, Baker TS, Incardona NL. Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications. Nature. 355: 137-43. PMID 1370343 DOI: 10.1038/355137A0  0.369
1992 Stoops JK, Baker TS, Schroeter JP, Kolodziej SJ, Niu XD, Reed LJ. Three-dimensional structure of the truncated core of the Saccharomyces cerevisiae pyruvate dehydrogenase complex determined from negative stain and cryoelectron microscopy images. The Journal of Biological Chemistry. 267: 24769-75. PMID 1280269  0.337
1991 Guo PX, Erickson S, Xu W, Olson N, Baker TS, Anderson D. Regulation of the phage phi 29 prohead shape and size by the portal vertex. Virology. 183: 366-73. PMID 1905079 DOI: 10.1016/0042-6822(91)90149-6  0.346
1991 Winkelmann DA, Baker TS, Rayment I. Three-dimensional structure of myosin subfragment-1 from electron microscopy of sectioned crystals Journal of Cell Biology. 114: 701-703. PMID 1869586 DOI: 10.1083/Jcb.114.4.701  0.605
1991 Booy FP, Newcomb WW, Trus BL, Brown JC, Baker TS, Steven AC. Liquid-crystalline, phage-like packing of encapsidated DNA in herpes simplex virus. Cell. 64: 1007-15. PMID 1848156 DOI: 10.1016/0092-8674(91)90324-R  0.366
1991 Stoops JK, Schroeter JP, Bretaudiere JP, Olson NH, Baker TS, Strickland DK. Structural studies of human α2-macroglobulin: Concordance between projected views obtained by negative-stain and cryoelectron microscopy Journal of Structural Biology. 106: 172-178. PMID 1725125 DOI: 10.1016/1047-8477(91)90086-C  0.358
1991 Olson NH, Baker TS, Johnson JE, Hendry DA. The three-dimensional structure of frozen-hydrated Nudaurelia capensis beta virus, a T = 4 insect virus. Journal of Structural Biology. 105: 111-22. PMID 1712620 DOI: 10.1016/1047-8477(90)90105-L  0.383
1991 Baker TS, Newcomb WW, Olson NH, Cowsert LM, Olson C, Brown JC. Structures of bovine and human papillomaviruses. Analysis by cryoelectron microscopy and three-dimensional image reconstruction. Biophysical Journal. 60: 1445-56. PMID 1663794 DOI: 10.1016/S0006-3495(91)82181-6  0.42
1990 Sosinsky GE, Baker TS, Caspar DL, Goodenough DA. Correlation analysis of gap junction lattice images. Biophysical Journal. 58: 1213-26. PMID 2291941 DOI: 10.1016/S0006-3495(90)82462-0  0.589
1990 Yeager M, Dryden KA, Olson NH, Greenberg HB, Baker TS. Three-dimensional structure of rhesus rotavirus by cryoelectron microscopy and image reconstruction. The Journal of Cell Biology. 110: 2133-44. PMID 2161857 DOI: 10.1083/Jcb.110.6.2133  0.345
1990 Baker TS, Newcomb WW, Booy FP, Brown JC, Steven AC. Three-dimensional structures of maturable and abortive capsids of equine herpesvirus 1 from cryoelectron microscopy Journal of Virology. 64: 563-573. PMID 2153224 DOI: 10.1128/Jvi.64.2.563-573.1990  0.419
1989 Olson NH, Baker TS. Magnification calibration and the determination of spherical virus diameters using cryo-microscopy. Ultramicroscopy. 30: 281-97. PMID 2800042 DOI: 10.1016/0304-3991(89)90057-0  0.37
1989 Baker TS, Drak J, Bina M. The capsid of small papova viruses contains 72 pentameric capsomeres: direct evidence from cryo-electron-microscopy of simian virus 40. Biophysical Journal. 55: 243-53. PMID 2540847 DOI: 10.1016/S0006-3495(89)82799-7  0.496
1988 Baker TS, Drak J, Bina M. Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core. Proceedings of the National Academy of Sciences of the United States of America. 85: 422-6. PMID 2829185 DOI: 10.1073/Pnas.85.2.422  0.478
1987 Baker TS, Rayment I. Chapter 20 Papovaviridae Perspectives in Medical Virology. 3: 335-348. DOI: 10.1016/S0168-7069(08)70107-1  0.605
1985 Baker TS, Sosinsky GE, Caspar DL, Gall C, Goodenough DA. Gap junction structures. VII. Analysis of connexon images obtained with cationic and anionic negative stains. Journal of Molecular Biology. 184: 81-98. PMID 2411939 DOI: 10.1016/0022-2836(85)90045-2  0.589
1984 Makowski L, Caspar DL, Phillips WC, Baker TS, Goodenough DA. Gap junction structures. VI. Variation and conservation in connexon conformation and packing. Biophysical Journal. 45: 208-18. PMID 6324904 DOI: 10.1016/S0006-3495(84)84149-1  0.591
1984 Baker TS, Caspar DL. Computer image modeling of pentamer packing in polyoma virus "hexamer" tubes. Ultramicroscopy. 13: 137-51. PMID 6089394 DOI: 10.1016/0304-3991(84)90064-0  0.618
1983 Rayment I, Baker TS, Caspar DL. A Description of the Techniques and Application of Molecular Replacement Used to Determine the Structure of Polyoma Virus Capsid at 22.5 Å Resolution. Acta Crystallographica. Section B, Structural Science. 39: 505-516. PMID 25242833 DOI: 10.1107/S0108768183002785  0.712
1983 Baker TS, Caspar DL, Murakami WT. Polyoma virus 'hexamer' tubes consist of paired pentamers. Nature. 303: 446-8. PMID 6304526 DOI: 10.1038/303446A0  0.634
1983 Baker TS, Caspar DL, Hollingshead CJ, Goodenough DA. Gap junction structures. IV. Asymmetric features revealed by low-irradiation microscopy. The Journal of Cell Biology. 96: 204-16. PMID 6186671 DOI: 10.1083/Jcb.96.1.204  0.617
1982 Rayment I, Baker TS, Caspar DL, Murakami WT. Polyoma virus capsid structure at 22.5 A resolution. Nature. 295: 110-5. PMID 6276752 DOI: 10.1038/295110A0  0.716
1979 Amos LA, Baker TS. The three-dimensional structure of tubulin protofilaments. Nature. 279: 607-12. PMID 450110 DOI: 10.1038/279607A0  0.649
1979 Frank J, Goldfarb W, Eisenberg D, Baker TS. Addendum to "reconstruction of glutamine synthetase using computer averaging". Ultramicroscopy. 4: 247. PMID 38551 DOI: 10.1016/S0304-3991(79)90319-X  0.423
1979 Amos LA, Baker TS. Three-dimensional image of tubulin in zinc-induced sheets, reconstructed from electron micrographs International Journal of Biological Macromolecules. 1: 146-156. DOI: 10.1016/0141-8130(79)90042-4  0.641
1978 Eisenberg D, Baker TS, Suh SW, Smith WW. Structural studies of ribulose 1,5-bisphosphate carboxylase/oxygenase. Basic Life Sciences. 11: 271-81. PMID 747602 DOI: 10.1007/978-1-4684-8106-8_17  0.609
1978 Baker TS, Amos LA. Structure of the tubulin dimer in zinc-induced sheets. Journal of Molecular Biology. 123: 89-106. PMID 682196 DOI: 10.1016/0022-2836(78)90378-9  0.665
1978 Frank J, Goldfarb W, Eisenberg D, Baker TS. Reconstruction of glutamine synthetase using computer averaging. Ultramicroscopy. 3: 283-90. PMID 32653 DOI: 10.1016/S0304-3991(78)80038-2  0.462
1977 Baker TS, Eisenberg D, Eiserling F. Ribulose bisphosphate carboxylase: a two-layered, square-shaped molecule of symmetry 422. Science (New York, N.Y.). 196: 293-5. PMID 17756097 DOI: 10.1126/Science.196.4287.293  0.482
1977 Baker TS, Suh SW, Eisenberg D. Structure of ribulose-1,5-bisphosphate carboxylase-oxygenase: Form III crystals. Proceedings of the National Academy of Sciences of the United States of America. 74: 1037-41. PMID 16592389 DOI: 10.1073/Pnas.74.3.1037  0.608
1975 Baker TS, Eisenberg D, Eiserling FA, Weissman L. The structure of form I crystals of D-ribulose-1,5-diphosphate carboxylase. Journal of Molecular Biology. 91: 391-9. PMID 1152035 DOI: 10.1016/0022-2836(75)90267-3  0.511
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