Year |
Citation |
Score |
2021 |
Ge J, Elferich J, Dehghani-Ghahnaviyeh S, Zhao Z, Meadows M, von Gersdorff H, Tajkhorshid E, Gouaux E. Molecular mechanism of prestin electromotive signal amplification. Cell. PMID 34390643 DOI: 10.1016/j.cell.2021.07.034 |
0.309 |
|
2021 |
Kapoor K, Pant S, Tajkhorshid E. Active participation of membrane lipids in inhibition of multidrug transporter P-glycoprotein. Chemical Science. 12: 6293-6306. PMID 34084427 DOI: 10.1039/d0sc06288j |
0.333 |
|
2021 |
Haloi N, Wen PC, Cheng Q, Yang M, Natarajan G, Camara AKS, Kwok WM, Tajkhorshid E. Structural basis of complex formation between mitochondrial anion channel VDAC1 and Hexokinase-II. Communications Biology. 4: 667. PMID 34083717 DOI: 10.1038/s42003-021-02205-y |
0.307 |
|
2020 |
Lam K, Tajkhorshid E. Membrane Interactions of Cy3 and Cy5 Fluorophores and Their Effects on Membrane-Protein Dynamics. Biophysical Journal. PMID 32533943 DOI: 10.1016/J.Bpj.2020.05.027 |
0.321 |
|
2020 |
Kumar P, Wang Y, Zhang Z, Zhao Z, Cymes GD, Tajkhorshid E, Grosman C. Cryo-EM structures of a lipid-sensitive pentameric ligand-gated ion channel embedded in a phosphatidylcholine-only bilayer. Proceedings of the National Academy of Sciences of the United States of America. PMID 31911476 DOI: 10.1073/Pnas.1906823117 |
0.309 |
|
2019 |
Jiang T, Wen PC, Trebesch N, Zhao Z, Pant S, Kapoor K, Shekhar M, Tajkhorshid E. Computational Dissection of Membrane Transport at a Microscopic Level. Trends in Biochemical Sciences. PMID 31813734 DOI: 10.1016/J.Tibs.2019.09.001 |
0.308 |
|
2019 |
Pant S, Tajkhorshid E. Microscopic Characterization of GRP1 PH Domain Interaction with Anionic Membranes. Journal of Computational Chemistry. PMID 31762060 DOI: 10.1002/Jcc.26109 |
0.335 |
|
2019 |
Martens C, Shekhar M, Lau AM, Tajkhorshid E, Politis A. Integrating hydrogen-deuterium exchange mass spectrometry with molecular dynamics simulations to probe lipid-modulated conformational changes in membrane proteins. Nature Protocols. PMID 31605097 DOI: 10.1038/S41596-019-0219-6 |
0.307 |
|
2019 |
Muller MP, Jiang T, Sun C, Lihan M, Pant S, Mahinthichaichan P, Trifan A, Tajkhorshid E. Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation. Chemical Reviews. PMID 30978005 DOI: 10.1021/Acs.Chemrev.8B00608 |
0.308 |
|
2018 |
Martens C, Shekhar M, Borysik AJ, Lau AM, Reading E, Tajkhorshid E, Booth PJ, Politis A. Direct protein-lipid interactions shape the conformational landscape of secondary transporters. Nature Communications. 9: 4151. PMID 30297844 DOI: 10.1016/J.Bpj.2018.11.2987 |
0.326 |
|
2017 |
Tietjen GT, Baylon JL, Kerr D, Gong Z, Henderson JM, Heffern CTR, Meron M, Lin B, Schlossman ML, Adams EJ, Tajkhorshid E, Lee KYC. Coupling X-Ray Reflectivity and In Silico Binding to Yield Dynamics of Membrane Recognition by Tim1. Biophysical Journal. 113: 1505-1519. PMID 28978444 DOI: 10.1016/J.Bpj.2017.08.003 |
0.332 |
|
2017 |
Jiang T, Yu K, Hartzell HC, Tajkhorshid E. Lipids and ions traverse the membrane by the same physical pathway in the nhTMEM16 scramblase. Elife. 6. PMID 28917060 DOI: 10.7554/eLife.28671 |
0.31 |
|
2017 |
Vermaas JV, Tajkhorshid E. Differential Membrane Binding Mechanics of Synaptotagmin Isoforms Observed in Atomic Detail. Biochemistry. 56: 281-293. PMID 27997124 DOI: 10.1021/Acs.Biochem.6B00468 |
0.321 |
|
2017 |
Zhao Z, Tajkhorshid E. Characterizing Outward- to Inward-Facing Transition Pathway of Dopamine Transporter Biophysical Journal. 112: 128a. DOI: 10.1016/J.Bpj.2016.11.713 |
0.31 |
|
2017 |
Kerr D, Gong Z, Tietjen G, Baylon J, Hwang L, Henderson JM, Lin B, Meron M, Bu W, Schlossman M, Tajkhorshid E, Adams E, Yee Lee K. Membrane Bound Structures of Peripheral Membrane Binding Proteins TIM3 and TIM1 Produced by Molecular Dynamics Informed Analysis of X-Ray Scattering Experiments Biophysical Journal. 112: 391a. DOI: 10.1016/J.Bpj.2016.11.2122 |
0.315 |
|
2016 |
Vermaas JV, Trebesch N, Mayne CG, Thangapandian S, Shekhar M, Mahinthichaichan P, Baylon JL, Jiang T, Wang Y, Muller MP, Shinn E, Zhao Z, Wen PC, Tajkhorshid E. Microscopic Characterization of Membrane Transporter Function by In Silico Modeling and Simulation. Methods in Enzymology. 578: 373-428. PMID 27497175 DOI: 10.1016/Bs.Mie.2016.05.042 |
0.332 |
|
2016 |
Vermaas JV, Tajkhorshid E. Electrostatic Lock Controlling Structural Transition in the EmrE Polyaromatic Cation Transporter Biophysical Journal. 110: 628a. DOI: 10.1016/J.Bpj.2015.11.3365 |
0.33 |
|
2016 |
Muller MP, Tajkhorshid E. Molecular Basis for Lipid Specificity of the Coagulation Factor X Membrane-Binding Domain Biophysical Journal. 110: 424a. DOI: 10.1016/J.Bpj.2015.11.2291 |
0.324 |
|
2016 |
Jiang T, Thangapandian S, Tajkhorshid E. Functional Characterization of Calcium-activated Phospholipid Scramblase Activity of nhTMEM16 Biophysical Journal. 110: 179a-180a. DOI: 10.1016/J.Bpj.2015.11.1001 |
0.302 |
|
2015 |
Vermaas JV, Baylon JL, Arcario MJ, Muller MP, Wu Z, Pogorelov TV, Tajkhorshid E. Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution. The Journal of Membrane Biology. 248: 563-82. PMID 25998378 DOI: 10.1007/S00232-015-9806-9 |
0.317 |
|
2015 |
Li J, Wen PC, Moradi M, Tajkhorshid E. Computational characterization of structural dynamics underlying function in active membrane transporters. Current Opinion in Structural Biology. 31: 96-105. PMID 25913536 DOI: 10.1016/J.Sbi.2015.04.001 |
0.321 |
|
2015 |
Vermaas JV, Tajkhorshid E. Strength, Not Depth: An Exploration of Differential Membrane Binding Kinetics of Synaptotagmin-1 and Synaptotagmin-7 C2 Domains Biophysical Journal. 108: 555a. DOI: 10.1016/J.Bpj.2014.11.3045 |
0.315 |
|
2015 |
Tajkhorshid E, Moradi M, Li J, Wen P, Thangapandian S, Vermaas J. Advances in Atomic-Level Simulations of Large-Scale Functional Motions of Membrane Transporters Biophysical Journal. 108: 371a. DOI: 10.1016/J.Bpj.2014.11.2032 |
0.344 |
|
2015 |
Baylon JL, Tietjen GT, Lee KYC, Adams EJ, Tajkhorshid E. Molecular Details of the Mechanism of PS Recognition by TIM Proteins Biophysical Journal. 108: 248a-249a. DOI: 10.1016/J.Bpj.2014.11.1375 |
0.333 |
|
2014 |
Blanchard AE, Arcario MJ, Schulten K, Tajkhorshid E. A highly tilted membrane configuration for the prefusion state of synaptobrevin. Biophysical Journal. 107: 2112-21. PMID 25418096 DOI: 10.1016/J.Bpj.2014.09.013 |
0.327 |
|
2014 |
Arcario MJ, Tajkhorshid E. Membrane-induced structural rearrangement and identification of a novel membrane anchor in talin F2F3. Biophysical Journal. 107: 2059-69. PMID 25418091 DOI: 10.1016/J.Bpj.2014.09.022 |
0.314 |
|
2014 |
Arcario MJ, Mayne CG, Tajkhorshid E. Atomistic models of general anesthetics for use in in silico biological studies. The Journal of Physical Chemistry. B. 118: 12075-86. PMID 25303275 DOI: 10.1021/Jp502716M |
0.326 |
|
2014 |
Vermaas JV, Tajkhorshid E. Conformational heterogeneity of α-synuclein in membrane. Biochimica Et Biophysica Acta. 1838: 3107-17. PMID 25135664 DOI: 10.1016/J.Bbamem.2014.08.012 |
0.339 |
|
2014 |
Skeby KK, Tajkhorshid E, Birgit S. Capturing Spontaneous Binding of Human Islet Amyloid Polypeptide to Anionic Membranes using a Highly Mobile Membrane Mimetic Model Biophysical Journal. 106: 98a. DOI: 10.1016/J.Bpj.2013.11.614 |
0.334 |
|
2014 |
Wen P, Tajkhorshid E. Multiple Membrane-Compatible Conformations of an Substrate-Binding Component of ECF Transporters Biophysical Journal. 106: 790a. DOI: 10.1016/J.Bpj.2013.11.4330 |
0.325 |
|
2014 |
Arcario MJ, Tajkhorshid E. Utilizing Non-Equilibrium Methods to Probe the Effects of General Anesthetics on Ligand-Gated Ion Channel Dynamics Biophysical Journal. 106: 545a-546a. DOI: 10.1016/J.Bpj.2013.11.3039 |
0.305 |
|
2014 |
Shekhar M, Enkavi G, Tajkhorshid E. An Insight into the XylE Transport Cycle by Characterizing Proton Binding Site and its Coupling to the Substrate Transport Biophysical Journal. 106: 367a. DOI: 10.1016/J.Bpj.2013.11.2081 |
0.323 |
|
2014 |
Li J, Tajkhorshid E. Coupling of Ion Binding and Conformational Equilibrium in Na+-Driven Secondary Active Transporters Biophysical Journal. 106: 366a. DOI: 10.1016/J.Bpj.2013.11.2074 |
0.304 |
|
2014 |
Baylon J, Tajkhorshid E. Probing Ligand Dynamics in Membrane-Bound Cytochrome P450 3A4 to Characterize Substrate Access and Product Egress Pathways Biophysical Journal. 106: 13a. DOI: 10.1016/J.Bpj.2013.11.127 |
0.311 |
|
2014 |
Enkavi G, Li J, Wen P, Thangapandian S, Moradi M, Jiang T, Han W, Tajkhorshid E. A microscopic view of the mechanisms of active transport across the cellular membrane Annual Reports in Computational Chemistry. 10: 77-125. DOI: 10.1016/B978-0-444-63378-1.00004-5 |
0.329 |
|
2013 |
Moradi M, Tajkhorshid E. Mechanistic picture for conformational transition of a membrane transporter at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 110: 18916-21. PMID 24191018 DOI: 10.1073/Pnas.1313202110 |
0.32 |
|
2013 |
Baylon JL, Lenov IL, Sligar SG, Tajkhorshid E. Characterizing the membrane-bound state of cytochrome P450 3A4: structure, depth of insertion, and orientation. Journal of the American Chemical Society. 135: 8542-51. PMID 23697766 DOI: 10.1021/Ja4003525 |
0.32 |
|
2013 |
Wen PC, Verhalen B, Wilkens S, Mchaourab HS, Tajkhorshid E. On the origin of large flexibility of P-glycoprotein in the inward-facing state. The Journal of Biological Chemistry. 288: 19211-20. PMID 23658020 DOI: 10.1074/Jbc.M113.450114 |
0.336 |
|
2013 |
Li J, Shaikh SA, Enkavi G, Wen PC, Huang Z, Tajkhorshid E. Transient formation of water-conducting states in membrane transporters. Proceedings of the National Academy of Sciences of the United States of America. 110: 7696-701. PMID 23610412 DOI: 10.1073/Pnas.1218986110 |
0.312 |
|
2013 |
Enkavi G, Li J, Mahinthichaichan P, Wen PC, Huang Z, Shaikh SA, Tajkhorshid E. Simulation studies of the mechanism of membrane transporters. Methods in Molecular Biology (Clifton, N.J.). 924: 361-405. PMID 23034756 DOI: 10.1007/978-1-62703-017-5_14 |
0.335 |
|
2013 |
Baylon JL, Tajkhorshid E. Probing Substrate Access Pathways of the Active Site of Cytochrome P450 3A4 in its Membrane-Bound Form Biophysical Journal. 104: 561a. DOI: 10.1016/J.Bpj.2012.11.3108 |
0.308 |
|
2013 |
Ohkubo Y, Tajkhorshid E. Exploring Membrane-Bound form of the C2 Domain by HMMM Model Biophysical Journal. 104: 432a. DOI: 10.1016/J.Bpj.2012.11.2405 |
0.317 |
|
2013 |
Li J, Tajkhorshid E. Ion-Coupling of Conformational Equilibrium and Transition in Secondary Active Transporters Biophysical Journal. 104: 288a. DOI: 10.1016/J.Bpj.2012.11.1613 |
0.317 |
|
2013 |
Stolzenberg S, Huang Z, Mondal S, Weinstein H, Tajkhorshid E. Structural Transition between the Inward- and Outward-Facing States of the Glutamate Transporter in Different Lipid Environments Biophysical Journal. 104: 288a. DOI: 10.1016/J.Bpj.2012.11.1612 |
0.344 |
|
2013 |
Arcario MJ, Tajkhorshid E. Mechanism, Energetics, and Pathways for Association and Binding of Anesthetics to Membranes and Membrane Channels Biophysical Journal. 104: 208a. DOI: 10.1016/J.Bpj.2012.11.1177 |
0.33 |
|
2012 |
Ohkubo YZ, Pogorelov TV, Arcario MJ, Christensen GA, Tajkhorshid E. Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model. Biophysical Journal. 102: 2130-9. PMID 22824277 DOI: 10.1016/J.Bpj.2012.03.015 |
0.313 |
|
2012 |
Morrissey JH, Tajkhorshid E, Sligar SG, Rienstra CM. Tissue factor/factor VIIa complex: role of the membrane surface. Thrombosis Research. 129: S8-10. PMID 22417943 DOI: 10.1016/J.Thromres.2012.02.019 |
0.301 |
|
2012 |
Vermaas JV, Tajkhorshid E. Conformational Dynamics of Membrane-Bound α-Synuclein in a Highly Mobile Membrane Mimetic Biophysical Journal. 102: 493a. DOI: 10.1016/J.Bpj.2011.11.2700 |
0.336 |
|
2012 |
Baylon JL, Tajkhorshid E. Capturing Insertion and Dynamics of Membrane-Bound Cytochrome P450 3A4 using a Novel Membrane Mimetic Model Biophysical Journal. 102: 466a. DOI: 10.1016/J.Bpj.2011.11.2557 |
0.332 |
|
2012 |
Gan W, Moradi M, Tajkhorshid E. Characterizing Transition Pathways in the Transport Cycle of ABC Transporter MsbA Biophysical Journal. 102: 446a. DOI: 10.1016/J.Bpj.2011.11.2446 |
0.311 |
|
2012 |
Pogorelov TV, Tajkhorshid E. Glycophorin a Helix Insertion, Positioning, and Dimerization in Model Membranes Biophysical Journal. 102: 413a. DOI: 10.1016/J.Bpj.2011.11.2260 |
0.337 |
|
2012 |
Arcario MJ, Tajkhorshid E. Capturing Spontaneous Membrane Insertion and Membrane-Induced Conformational Changes of Talin at an Atomic Resolution Biophysical Journal. 102: 301a. DOI: 10.1016/J.Bpj.2011.11.1667 |
0.312 |
|
2011 |
Arcario MJ, Ohkubo YZ, Tajkhorshid E. Capturing spontaneous partitioning of peripheral proteins using a biphasic membrane-mimetic model. The Journal of Physical Chemistry. B. 115: 7029-37. PMID 21561114 DOI: 10.1021/Jp109631Y |
0.303 |
|
2011 |
Arcario MJ, Tajkhorshid E. Dynamic Characterization of the Membrane-Mediated Activation of Integrin by Talin At Atomic Reoslution Blood. 118: 2191-2191. DOI: 10.1182/Blood.V118.21.2191.2191 |
0.327 |
|
2011 |
Enkavi G, Levin EJ, Zhou M, Tajkhorshid E. Energetics and Molecular Mechanisms of Permeation and Selectivity of Transport in the Urea Transporter Biophysical Journal. 100: 90a-91a. DOI: 10.1016/J.Bpj.2010.12.700 |
0.306 |
|
2011 |
Ohkubo YZ, Pogorelov TV, Arcario MJ, Tajkhorshid E. Spontaneous Binding of Membrane-Anchoring Proteins Captured with a Highly Mobile Membrane-Mimetic Model Biophysical Journal. 100: 639a-640a. DOI: 10.1016/J.Bpj.2010.12.3674 |
0.316 |
|
2011 |
Arcario MJ, Tajkhorshid E. Membrane Insertion and Membrane-Induced Conformational Changes of Talin F2F3 Triggering Integrin Activation Biophysical Journal. 100: 254a-255a. DOI: 10.1016/J.Bpj.2010.12.1607 |
0.311 |
|
2010 |
Shaikh S, Wen PC, Enkavi G, Huang Z, Tajkhorshid E. Capturing Functional Motions of Membrane Channels and Transporters with Molecular Dynamics Simulation. Journal of Computational and Theoretical Nanoscience. 7: 2481-2500. PMID 23710155 DOI: 10.1166/Jctn.2010.1636 |
0.34 |
|
2010 |
Morrissey JH, Davis-Harrison RL, Tavoosi N, Ke K, Pureza V, Boettcher JM, Clay MC, Rienstra CM, Ohkubo YZ, Pogorelov TV, Tajkhorshid E. Protein-phospholipid interactions in blood clotting. Thrombosis Research. 125: S23-5. PMID 20129649 DOI: 10.1016/J.Thromres.2010.01.027 |
0.306 |
|
2010 |
Enkavi G, Tajkhorshid E. Simulation of spontaneous substrate binding revealing the binding pathway and mechanism and initial conformational response of GlpT. Biochemistry. 49: 1105-14. PMID 20058936 DOI: 10.1021/Bi901412A |
0.344 |
|
2010 |
Arcario MJ, Tajkhorshid E. Characterizing Membrane-Bound Forms of Coagulation Factors at Atomic Resolution: Exploring Differences In Membrane Affinity. Blood. 116: 1139-1139. DOI: 10.1182/Blood.V116.21.1139.1139 |
0.324 |
|
2010 |
Pogorelov T, Ohkubo YZ, Tajkhorshid E. Characterizing the Structure and Dynamics of Nanodisc Lipid Bilayers of Different Compositions Biophysical Journal. 98: 665a. DOI: 10.1016/J.Bpj.2009.12.4257 |
0.322 |
|
2010 |
Ohkubo YZ, Tajkhorshid E. Dynamical Basis of the Enhancement of the Enzymatic Activity of Factor VIIa by Tissue Factor Biophysical Journal. 98: 689a. DOI: 10.1016/J.Bpj.2009.12.3787 |
0.309 |
|
2010 |
Wen P, Tajkhorshid E. The Origin of Nucleotide Dependence of Conformational Changes in ABC Transporters Biophysical Journal. 98: 627a-628a. DOI: 10.1016/J.Bpj.2009.12.3436 |
0.303 |
|
2010 |
Tajkhorshid E. A Dynamical View of Membrane Transporter Function at Sub-Angstrom Resolution Biophysical Journal. 98: 211a. DOI: 10.1016/J.Bpj.2009.12.1138 |
0.346 |
|
2009 |
Morrissey JH, Pureza V, Davis-Harrison RL, Sligar SG, Rienstra CM, Kijac AZ, Ohkubo YZ, Tajkhorshid E. Protein-membrane interactions: blood clotting on nanoscale bilayers. Journal of Thrombosis and Haemostasis : Jth. 7: 169-72. PMID 19630793 DOI: 10.1111/J.1538-7836.2009.03390.X |
0.304 |
|
2008 |
Celik L, Schiøtt B, Tajkhorshid E. Substrate binding and formation of an occluded state in the leucine transporter. Biophysical Journal. 94: 1600-12. PMID 18024499 DOI: 10.1529/Biophysj.107.117580 |
0.303 |
|
2006 |
Yin Y, Jensen MØ, Tajkhorshid E, Schulten K. Sugar binding and protein conformational changes in lactose permease. Biophysical Journal. 91: 3972-85. PMID 16963502 DOI: 10.1529/Biophysj.106.085993 |
0.373 |
|
2005 |
Gumbart J, Wang Y, Aksimentiev A, Tajkhorshid E, Schulten K. Molecular dynamics simulations of proteins in lipid bilayers Current Opinion in Structural Biology. 15: 423-431. PMID 16043343 DOI: 10.1016/J.Sbi.2005.07.007 |
0.319 |
|
2000 |
Tajkhorshid E, Baudry J, Schulten K, Suhai S. Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin. Biophysical Journal. 78: 683-93. PMID 10653781 DOI: 10.1016/S0006-3495(00)76626-4 |
0.316 |
|
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