Year |
Citation |
Score |
2023 |
Saadi AJ, de Oliveira AL, Kocot KM, Schwaha T. Genomic and transcriptomic survey of bryozoan Hox and ParaHox genes with emphasis on phylactolaemate bryozoans. Bmc Genomics. 24: 711. PMID 38001438 DOI: 10.1186/s12864-023-09826-z |
0.376 |
|
2023 |
Song H, Wang Y, Shao H, Li Z, Hu P, Yap-Chiongco MK, Shi P, Zhang T, Li C, Wang Y, Ma P, Vinther J, Wang H, Kocot KM. Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting. Proceedings of the National Academy of Sciences of the United States of America. 120: e2302361120. PMID 37738291 DOI: 10.1073/pnas.2302361120 |
0.446 |
|
2022 |
O'Brien KM, Crockett EL, Adams BJ, Amsler CD, Appiah-Madson HJ, Collins A, Desvignes T, Detrich HW, Distel DL, Eppley SM, Frable BW, Franz NM, Grim JM, Kocot KM, Mahon AR, et al. The time is right for an Antarctic biorepository network. Proceedings of the National Academy of Sciences of the United States of America. 119: e2212800119. PMID 36480475 DOI: 10.1073/pnas.2212800119 |
0.516 |
|
2022 |
Saadi AJ, Bibermair J, Kocot KM, Roberts NG, Hirose M, Calcino A, Baranyi C, Chaichana R, Wood TS, Schwaha T. Phylogenomics reveals deep relationships and diversification within phylactolaemate bryozoans. Proceedings. Biological Sciences. 289: 20221504. PMID 36350215 DOI: 10.1098/rspb.2022.1504 |
0.301 |
|
2022 |
Varney RM, Yap-Chiongco MK, Mikkelsen NT, Kocot KM. Genome of the lepidopleurid chiton (Mollusca, Polyplacophora). F1000research. 11: 555. PMID 36016991 DOI: 10.12688/f1000research.121706.1 |
0.811 |
|
2022 |
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AE, Pankey MS, Ellis EA, Varney R, Štefka J, Zrzavý J. Different phylogenomic methods support monophyly of enigmatic 'Mesozoa' (Dicyemida + Orthonectida, Lophotrochozoa). Proceedings. Biological Sciences. 289: 20220683. PMID 35858055 DOI: 10.1098/rspb.2022.0683 |
0.779 |
|
2022 |
Krug PJ, Caplins SA, Algoso K, Thomas K, Valdés ÁA, Wade R, Wong NLWS, Eernisse DJ, Kocot KM. Phylogenomic resolution of the root of Panpulmonata, a hyperdiverse radiation of gastropods: new insight into the evolution of air breathing. Proceedings. Biological Sciences. 289: 20211855. PMID 35382597 DOI: 10.1098/rspb.2021.1855 |
0.33 |
|
2021 |
Sun J, Li R, Chen C, Sigwart JD, Kocot KM. Benchmarking Oxford Nanopore read assemblers for high-quality molluscan genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200160. PMID 33813888 DOI: 10.1098/rstb.2020.0160 |
0.393 |
|
2021 |
Varney RM, Brenzinger B, Malaquias MAE, Meyer CP, Schrödl M, Kocot KM. Assessment of mitochondrial genomes for heterobranch gastropod phylogenetics. Bmc Ecology and Evolution. 21: 6. PMID 33514315 DOI: 10.1186/s12862-020-01728-y |
0.815 |
|
2020 |
Varney RM, Speiser DI, McDougall C, Degnan BM, Kocot KM. The iron-responsive genome of the chiton Acanthopleura Granulata. Genome Biology and Evolution. PMID 33320175 DOI: 10.1093/gbe/evaa263 |
0.786 |
|
2020 |
Kong L, Li Y, Kocot KM, Yang Y, Qi L, Li Q, Halanych KM. Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size. Molecular Phylogenetics and Evolution. 106857. PMID 32473333 DOI: 10.1016/J.Ympev.2020.106857 |
0.675 |
|
2020 |
Kocot KM, Poustka AJ, Stöger I, Halanych KM, Schrödl M. New data from Monoplacophora and a carefully-curated dataset resolve molluscan relationships. Scientific Reports. 10: 101. PMID 31919367 DOI: 10.1038/S41598-019-56728-W |
0.665 |
|
2019 |
Kocot KM, Wollesen T, Varney RM, Schwartz ML, Steiner G, Wanninger A. Complete mitochondrial genomes of two scaphopod molluscs. Mitochondrial Dna. Part B, Resources. 4: 3161-3162. PMID 33365899 DOI: 10.1080/23802359.2019.1666689 |
0.807 |
|
2019 |
Laumer CE, Fernández R, Lemer S, Combosch D, Kocot K, Riesgo A, Andrade SCS, Sterrer W, Sørensen MV, Giribet G. Correction to 'Revisiting metazoan phylogeny with genomic sampling of all phyla'. Proceedings. Biological Sciences. 286: 20191941. PMID 31690235 DOI: 10.1098/Rspb.2019.1941 |
0.443 |
|
2019 |
Laumer CE, Fernández R, Lemer S, Combosch D, Kocot KM, Riesgo A, Andrade SCS, Sterrer W, Sørensen MV, Giribet G. Revisiting metazoan phylogeny with genomic sampling of all phyla. Proceedings. Biological Sciences. 286: 20190831. PMID 31288696 DOI: 10.1098/Rspb.2019.0831 |
0.398 |
|
2019 |
Smythe AB, Holovachov O, Kocot KM. Improved phylogenomic sampling of free-living nematodes enhances resolution of higher-level nematode phylogeny. Bmc Evolutionary Biology. 19: 121. PMID 31195978 DOI: 10.1186/s12862-019-1444-x |
0.325 |
|
2019 |
Kocot KM, Todt C, Mikkelsen NT, Halanych KM. Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot. Proceedings. Biological Sciences. 286: 20190115. PMID 31064303 DOI: 10.1098/Rspb.2019.0115 |
0.644 |
|
2019 |
Kocot KM, Wollesen T, Varney RM, Schwartz ML, Steiner G, Wanninger A. Complete mitochondrial genomes of two scaphopod molluscs Mitochondrial Dna Part B. 4: 3161-3162. DOI: 10.1080/23802359.2019.1666689 |
0.795 |
|
2019 |
Varney RM, Funch P, Kocot KM, Sørensen MV. A new species of Echinoderes (Cyclorhagida: Echinoderidae) from the San Juan Islands, Washington State, USA, and insights into the kinorhynch transcriptome Zoologischer Anzeiger. 282: 52-63. DOI: 10.1016/J.JCZ.2019.06.003 |
0.742 |
|
2018 |
Li Y, Kocot KM, Tassia MG, Cannon JT, Bernt M, Halanych KM. Mitogenomics reveals a novel genetic code in Hemichordata. Genome Biology and Evolution. PMID 30476024 DOI: 10.1093/Gbe/Evy254 |
0.729 |
|
2018 |
Mikkelsen NT, Todt C, Kocot KM, Halanych KM, Willassen E. Molecular phylogeny of Caudofoveata (Mollusca) challenges traditional views. Molecular Phylogenetics and Evolution. PMID 30423439 DOI: 10.1016/J.Ympev.2018.10.037 |
0.623 |
|
2018 |
Galaska MP, Li Y, Kocot KM, Mahon AR, Halanych KM. Conservation of mitochondrial genome arrangements in brittle stars (Echinodermata, Ophiuroidea). Molecular Phylogenetics and Evolution. PMID 30316947 DOI: 10.1016/J.Ympev.2018.10.002 |
0.767 |
|
2018 |
Mikkelsen NT, Kocot KM, Halanych KM. Mitogenomics reveals phylogenetic relationships of caudofoveate aplacophoran molluscs. Molecular Phylogenetics and Evolution. PMID 29702218 DOI: 10.1016/J.Ympev.2018.04.031 |
0.699 |
|
2018 |
Kocot KM, Tassia MG, Halanych KM, Swalla BJ. Phylogenomics offers resolution of major tunicate relationships. Molecular Phylogenetics and Evolution. PMID 29330139 DOI: 10.1016/J.Ympev.2018.01.005 |
0.743 |
|
2018 |
Kersken D, Kocot K, Janussen D, Schell T, Pfenninger M, Martínez Arbizu P. First insights into the phylogeny of deep-sea glass sponges (Hexactinellida) from polymetallic nodule fields in the Clarion-Clipperton Fracture Zone (CCFZ), northeastern Pacific Hydrobiologia. 811: 283-293. DOI: 10.1007/S10750-017-3498-3 |
0.427 |
|
2017 |
Whelan NV, Kocot KM, Moroz TP, Mukherjee K, Williams P, Paulay G, Moroz LL, Halanych KM. Author Correction: Ctenophore relationships and their placement as the sister group to all other animals. Nature Ecology & Evolution. PMID 29044116 DOI: 10.1038/S41559-017-0381-6 |
0.494 |
|
2017 |
Whelan NV, Kocot KM, Moroz TP, Mukherjee K, Williams P, Paulay G, Moroz LL, Halanych KM. Ctenophore relationships and their placement as the sister group to all other animals. Nature Ecology & Evolution. PMID 28993654 DOI: 10.1038/S41559-017-0331-3 |
0.623 |
|
2017 |
Halanych KM, Kocot KM. Genome evolution: Shellfish genes. Nature Ecology & Evolution. 1: 142. PMID 28812684 DOI: 10.1038/s41559-017-0142 |
0.656 |
|
2017 |
Hall MR, Kocot KM, Baughman KW, Fernandez-Valverde SL, Gauthier ME, Hatleberg WL, Krishnan A, McDougall C, Motti CA, Shoguchi E, Wang T, Xiang X, Zhao M, Bose U, Shinzato C, et al. The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest. Nature. PMID 28379940 DOI: 10.1038/Nature22033 |
0.338 |
|
2017 |
Tanner AR, Fuchs D, Winkelmann IE, Gilbert MT, Pankey MS, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR, Pisani D, Vinther J. Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proceedings. Biological Sciences. 284. PMID 28250188 DOI: 10.1098/Rspb.2016.2818 |
0.721 |
|
2016 |
Stöger I, Kocot KM, Poustka AJ, Wilson NG, Ivanov D, Halanych KM, Schrödl M. Monoplacophoran mitochondrial genomes: convergent gene arrangements and little phylogenetic signal. Bmc Evolutionary Biology. 16: 274. PMID 27986078 DOI: 10.1186/S12862-016-0829-3 |
0.687 |
|
2016 |
Kocot KM, Struck TH, Merkel J, Waits DS, Todt C, Brannock PM, Weese DA, Cannon JT, Moroz LL, Lieb B, Halanych KM. Phylogenomics of Lophotrochozoa with consideration of systematic error. Systematic Biology. PMID 27664188 DOI: 10.1093/Sysbio/Syw079 |
0.693 |
|
2016 |
Cannon JT, Kocot KM. Phylogenomics Using Transcriptome Data. Methods in Molecular Biology (Clifton, N.J.). 1452: 65-80. PMID 27460370 DOI: 10.1007/978-1-4939-3774-5_4 |
0.624 |
|
2016 |
Garrison NL, Rodriguez J, Agnarsson I, Coddington JA, Griswold CE, Hamilton CA, Hedin M, Kocot KM, Ledford JM, Bond JE. Spider phylogenomics: untangling the Spider Tree of Life. Peerj. 4: e1719. PMID 26925338 DOI: 10.7717/Peerj.1719 |
0.362 |
|
2016 |
Halanych KM, Whelan NV, Kocot KM, Kohn AB, Moroz LL. Miscues misplace sponges. Proceedings of the National Academy of Sciences of the United States of America. PMID 26862177 DOI: 10.1073/Pnas.1525332113 |
0.546 |
|
2016 |
Li Y, Kocot KM, Whelan NV, Santos SR, Waits DS, Thornhill DJ, Halanych KM. Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods Zoologica Scripta. 46: 200-213. DOI: 10.1111/Zsc.12201 |
0.71 |
|
2015 |
Whelan NV, Kocot KM, Halanych KM. Employing Phylogenomics to Resolve the Relationships among Cnidarians, Ctenophores, Sponges, Placozoans, and Bilaterians. Integrative and Comparative Biology. PMID 25972566 DOI: 10.1093/Icb/Icv037 |
0.584 |
|
2015 |
Whelan NV, Kocot KM, Moroz LL, Halanych KM. Error, signal, and the placement of Ctenophora sister to all other animals. Proceedings of the National Academy of Sciences of the United States of America. 112: 5773-8. PMID 25902535 DOI: 10.1073/Pnas.1503453112 |
0.587 |
|
2015 |
Havird JC, Kocot KM, Brannock PM, Cannon JT, Waits DS, Weese DA, Santos SR, Halanych KM. Reconstruction of cyclooxygenase evolution in animals suggests variable, lineage-specific duplications, and homologs with low sequence identity. Journal of Molecular Evolution. 80: 193-208. PMID 25758350 DOI: 10.1007/S00239-015-9670-3 |
0.764 |
|
2015 |
Li Y, Kocot KM, Schander C, Santos SR, Thornhill DJ, Halanych KM. Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida). Molecular Phylogenetics and Evolution. 85: 221-9. PMID 25721539 DOI: 10.1016/J.Ympev.2015.02.008 |
0.766 |
|
2014 |
Cannon JT, Kocot KM, Waits DS, Weese DA, Swalla BJ, Santos SR, Halanych KM. Phylogenomic resolution of the hemichordate and echinoderm clade. Current Biology : Cb. 24: 2827-32. PMID 25454590 DOI: 10.1016/J.Cub.2014.10.016 |
0.774 |
|
2014 |
Whelan NV, Kocot KM, Santos SR, Halanych KM. Nemertean toxin genes revealed through transcriptome sequencing. Genome Biology and Evolution. 6: 3314-25. PMID 25432940 DOI: 10.1093/Gbe/Evu258 |
0.627 |
|
2014 |
Halanych KM, Kocot KM. Repurposed transcriptomic data facilitate discovery of innate immunity toll-like receptor (TLR) Genes across Lophotrochozoa. The Biological Bulletin. 227: 201-9. PMID 25411377 DOI: 10.1086/Bblv227N2P201 |
0.538 |
|
2014 |
Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, et al. The ctenophore genome and the evolutionary origins of neural systems. Nature. 510: 109-14. PMID 24847885 DOI: 10.1038/Nature13400 |
0.726 |
|
2014 |
Brix S, Meißner K, Stransky B, Halanych KM, Jennings RM, Kocot KM, Svavarsson J. The IceAGE project - A follow up of BIOICE Polish Polar Research. 35: 141-150. DOI: 10.2478/Popore-2014-0010 |
0.424 |
|
2013 |
Kocot KM, Citarella MR, Moroz LL, Halanych KM. PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics. Evolutionary Bioinformatics Online. 9: 429-35. PMID 24250218 DOI: 10.4137/Ebo.S12813 |
0.637 |
|
2013 |
Kocot KM, Halanych KM, Krug PJ. Phylogenomics supports Panpulmonata: opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs. Molecular Phylogenetics and Evolution. 69: 764-71. PMID 23850501 DOI: 10.1016/J.Ympev.2013.07.001 |
0.605 |
|
2012 |
Pierce SK, Fang X, Schwartz JA, Jiang X, Zhao W, Curtis NE, Kocot KM, Yang B, Wang J. Transcriptomic evidence for the expression of horizontally transferred algal nuclear genes in the photosynthetic sea slug, Elysia chlorotica. Molecular Biology and Evolution. 29: 1545-56. PMID 22319135 DOI: 10.1093/molbev/msr316 |
0.384 |
|
2012 |
Kohn AB, Citarella MR, Kocot KM, Bobkova YV, Halanych KM, Moroz LL. Rapid evolution of the compact and unusual mitochondrial genome in the ctenophore, Pleurobrachia bachei. Molecular Phylogenetics and Evolution. 63: 203-7. PMID 22201557 DOI: 10.1016/J.Ympev.2011.12.009 |
0.668 |
|
2011 |
Kocot KM, Cannon JT, Todt C, Citarella MR, Kohn AB, Meyer A, Santos SR, Schander C, Moroz LL, Lieb B, Halanych KM. Phylogenomics reveals deep molluscan relationships. Nature. 477: 452-6. PMID 21892190 DOI: 10.1038/Nature10382 |
0.769 |
|
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