| Year |
Citation |
Score |
| 2024 |
Naish M, Henderson IR. The structure, function, and evolution of plant centromeres. Genome Research. 34: 161-178. PMID 38485193 DOI: 10.1101/gr.278409.123 |
0.368 |
|
| 2024 |
Fernandes JB, Naish M, Lian Q, Burns R, Tock AJ, Rabanal FA, Wlodzimierz P, Habring A, Nicholas RE, Weigel D, Mercier R, Henderson IR. Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology. 25: 30. PMID 38254210 DOI: 10.1186/s13059-024-03163-4 |
0.406 |
|
| 2023 |
Dluzewska J, Dziegielewski W, Szymanska-Lejman M, Gazecka M, Henderson IR, Higgins JD, Ziolkowski PA. MSH2 stimulates interfering and inhibits non-interfering crossovers in response to genetic polymorphism. Nature Communications. 14: 6716. PMID 37872134 DOI: 10.1038/s41467-023-42511-z |
0.604 |
|
| 2023 |
Shimada A, Cahn J, Ernst E, Lynn J, Grimanelli D, Henderson I, Kakutani T, Martienssen RA. Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs. Biorxiv : the Preprint Server For Biology. PMID 37577592 DOI: 10.1101/2023.08.02.551486 |
0.597 |
|
| 2022 |
Hyde L, Osman K, Winfield M, Sanchez-Moran E, Higgins JD, Henderson IR, Sparks C, Franklin FCH, Edwards KJ. Identification, characterisation, and rescue of CRISPR/Cas9 generated wheat SPO11-1 mutants. Plant Biotechnology Journal. PMID 36373224 DOI: 10.1111/pbi.13961 |
0.34 |
|
| 2022 |
Higgins JD, Osman K, Desjardins SD, Henderson IR, Edwards KJ, Franklin FCH. Unravelling mechanisms that govern meiotic crossover formation in wheat. Biochemical Society Transactions. PMID 35901450 DOI: 10.1042/BST20220405 |
0.329 |
|
| 2022 |
Lambing C, Kuo P, Kim J, Osman K, Whitbread AL, Yang J, Choi K, Franklin FCH, Henderson IR. Differentiated function and localisation of SPO11-1 and PRD3 on the chromosome axis during meiotic DSB formation in Arabidopsis thaliana. Plos Genetics. 18: e1010298. PMID 35857772 DOI: 10.1371/journal.pgen.1010298 |
0.718 |
|
| 2022 |
Kim J, Park J, Kim H, Son N, Kim EJ, Kim J, Byun D, Lee Y, Park YM, Nageswaran DC, Kuo P, Rose T, Dang TVT, Hwang I, Lambing C, ... Henderson IR, et al. Arabidopsis HEAT SHOCK FACTOR BINDING PROTEIN is required to limit meiotic crossovers and HEI10 transcription. The Embo Journal. e109958. PMID 35670129 DOI: 10.15252/embj.2021109958 |
0.732 |
|
| 2022 |
Yelina NE, Holland D, Gonzalez-Jorge S, Hirsz D, Yang Z, Henderson IR. Co-expression of MEIOTIC-TOPOISOMERASE VIB-dCas9 with guide RNAs specific to a recombination hotspot is insufficient to increase crossover frequency in Arabidopsis. G3 (Bethesda, Md.). PMID 35485960 DOI: 10.1093/g3journal/jkac105 |
0.392 |
|
| 2022 |
Kbiri N, Dluzewska J, Henderson IR, Ziolkowski PA. Quantifying Meiotic Crossover Recombination in Arabidopsis Lines Expressing Fluorescent Reporters in Seeds Using SeedScoring Pipeline for CellProfiler. Methods in Molecular Biology (Clifton, N.J.). 2484: 121-134. PMID 35461449 DOI: 10.1007/978-1-0716-2253-7_10 |
0.566 |
|
| 2022 |
Kuo P, Henderson IR, Lambing C. CTAB DNA Extraction and Genotyping-by-Sequencing to Map Meiotic Crossovers in Plants. Methods in Molecular Biology (Clifton, N.J.). 2484: 43-53. PMID 35461443 DOI: 10.1007/978-1-0716-2253-7_4 |
0.384 |
|
| 2021 |
Naish M, Alonge M, Wlodzimierz P, Tock AJ, Abramson BW, Schmücker A, Mandáková T, Jamge B, Lambing C, Kuo P, Yelina N, Hartwick N, Colt K, Smith LM, Ton J, ... ... Henderson IR, et al. The genetic and epigenetic landscape of the centromeres. Science (New York, N.Y.). 374: eabi7489. PMID 34762468 DOI: 10.1126/science.abi7489 |
0.488 |
|
| 2021 |
Tock AJ, Holland DM, Jiang W, Osman K, Sanchez-Moran E, Higgins JD, Edwards KJ, Uauy C, Franklin FCH, Henderson IR. Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation. Genome Research. PMID 34426514 DOI: 10.1101/gr.273672.120 |
0.335 |
|
| 2021 |
Zhu L, Fernández-Jiménez N, Szymanska-Lejman M, Pelé A, Underwood CJ, Serra H, Lambing C, Dluzewska J, Bieluszewski T, Pradillo M, Henderson IR, Ziolkowski PA. Natural variation identifies SNI1, the SMC5/6 component, as a modifier of meiotic crossover in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34385313 DOI: 10.1073/pnas.2021970118 |
0.764 |
|
| 2021 |
Nageswaran DC, Kim J, Lambing C, Kim J, Park J, Kim EJ, Cho HS, Kim H, Byun D, Park YM, Kuo P, Lee S, Tock AJ, Zhao X, Hwang I, ... ... Henderson IR, et al. HIGH CROSSOVER RATE1 encodes PROTEIN PHOSPHATASE X1 and restricts meiotic crossovers in Arabidopsis. Nature Plants. PMID 33846593 DOI: 10.1038/s41477-021-00889-y |
0.728 |
|
| 2021 |
Osman K, Algopishi U, Higgins JD, Henderson IR, Edwards KJ, Franklin FCH, Sanchez-Moran E. Distal Bias of Meiotic Crossovers in Hexaploid Bread Wheat Reflects Spatio-Temporal Asymmetry of the Meiotic Program. Frontiers in Plant Science. 12: 631323. PMID 33679846 DOI: 10.3389/fpls.2021.631323 |
0.358 |
|
| 2020 |
Blackwell AR, Dluzewska J, Szymanska-Lejman M, Desjardins S, Tock AJ, Kbiri N, Lambing C, Lawrence EJ, Bieluszewski T, Rowan B, Higgins JD, Ziolkowski PA, Henderson IR. MSH2 shapes the meiotic crossover landscape in relation to interhomolog polymorphism in Arabidopsis. The Embo Journal. e104858. PMID 32935357 DOI: 10.15252/Embj.2020104858 |
0.645 |
|
| 2020 |
Lambing C, Kuo PC, Tock AJ, Topp SD, Henderson IR. ASY1 acts as a dosage-dependent antagonist of telomere-led recombination and mediates crossover interference in . Proceedings of the National Academy of Sciences of the United States of America. PMID 32499315 DOI: 10.1073/pnas.1921055117 |
0.368 |
|
| 2020 |
Lambing C, Tock AJ, Topp SD, Choi K, Kuo PC, Zhao X, Osman K, Higgins J, Franklin FCH, Henderson IR. Interacting genomic landscapes of REC8-cohesin, chromatin and meiotic recombination in Arabidopsis thaliana. The Plant Cell. PMID 32024691 DOI: 10.1105/Tpc.19.00866 |
0.765 |
|
| 2020 |
Lambing C, Choi K, Blackwell AR, Henderson IR. Chromatin Immunoprecipitation of Meiotically Expressed Proteins from Arabidopsis thaliana Flowers. Methods in Molecular Biology (Clifton, N.J.). 2061: 219-236. PMID 31583663 DOI: 10.1007/978-1-4939-9818-0_16 |
0.755 |
|
| 2019 |
Lim EC, Kim J, Park J, Kim EJ, Kim J, Park YM, Cho HS, Byun D, Henderson IR, Copenhaver GP, Hwang I, Choi K. DeepTetrad: high-throughput image analysis of meiotic tetrads by deep learning in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 31536659 DOI: 10.1111/Tpj.14543 |
0.694 |
|
| 2019 |
Lawrence EJ, Gao H, Tock AJ, Lambing C, Blackwell AR, Feng X, Henderson IR. Natural Variation in TBP-ASSOCIATED FACTOR 4b Controls Meiotic Crossover and Germline Transcription in Arabidopsis. Current Biology : Cb. PMID 31378616 DOI: 10.1016/j.cub.2019.06.084 |
0.34 |
|
| 2019 |
Fernandes JB, Wlodzimierz P, Henderson IR. Meiotic recombination within plant centromeres. Current Opinion in Plant Biology. 48: 26-35. PMID 30954771 DOI: 10.1016/j.pbi.2019.02.008 |
0.332 |
|
| 2018 |
Serra H, Choi K, Zhao X, Blackwell AR, Kim J, Henderson IR. Interhomolog polymorphism shapes meiotic crossover within the Arabidopsis RAC1 and RPP13 disease resistance genes. Plos Genetics. 14: e1007843. PMID 30543623 DOI: 10.1371/Journal.Pgen.1007843 |
0.74 |
|
| 2018 |
Tock AJ, Henderson IR. Hotspots for Initiation of Meiotic Recombination. Frontiers in Genetics. 9: 521. PMID 30467513 DOI: 10.3389/fgene.2018.00521 |
0.381 |
|
| 2018 |
Choi K, Zhao X, Tock AJ, Lambing C, Underwood CJ, Hardcastle TJ, Serra H, Kim J, Cho HS, Kim J, Ziolkowski PA, Yelina NE, Hwang I, Martienssen RA, Henderson IR. Nucleosomes and DNA methylation shape meiotic DSB frequency intransposons and gene regulatory regions. Genome Research. PMID 29530928 DOI: 10.1101/Gr.225599.117 |
0.831 |
|
| 2018 |
Underwood CJ, Choi K, Lambing C, Zhao X, Serra H, Borges F, Simorowski J, Ernst E, Jacob Y, Henderson IR, Martienssen RA. Epigenetic activation of meiotic recombination nearcentromeres via loss of H3K9me2 and non-CG DNA methylation. Genome Research. PMID 29530927 DOI: 10.1101/Gr.227116.117 |
0.839 |
|
| 2018 |
Serra H, Lambing C, Griffin CH, Topp SD, Nageswaran DC, Underwood CJ, Ziolkowski PA, Séguéla-Arnaud M, Fernandes JB, Mercier R, Henderson IR. Massive crossover elevation via combination ofandduringmeiosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463699 DOI: 10.1073/Pnas.1713071115 |
0.77 |
|
| 2017 |
Lawrence EJ, Griffin CH, Henderson IR. Modification of meiotic recombination by natural variation in plants. Journal of Experimental Botany. PMID 28992351 DOI: 10.1093/jxb/erx306 |
0.331 |
|
| 2017 |
Underwood CJ, Henderson IR, Martienssen RA. Genetic and epigenetic variation of transposable elements in Arabidopsis. Current Opinion in Plant Biology. 36: 135-141. PMID 28343122 DOI: 10.1016/J.Pbi.2017.03.002 |
0.722 |
|
| 2017 |
Ziolkowski PA, Underwood CJ, Lambing C, Martinez-Garcia M, Lawrence EJ, Ziolkowska L, Griffin C, Choi K, Franklin FC, Martienssen RA, Henderson IR. Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination. Genes & Development. PMID 28223312 DOI: 10.1101/Gad.295501.116 |
0.792 |
|
| 2017 |
Choi K, Yelina NE, Serra H, Henderson IR. Quantification and Sequencing of Crossover Recombinant Molecules from Arabidopsis Pollen DNA. Methods in Molecular Biology (Clifton, N.J.). 1551: 23-57. PMID 28138839 DOI: 10.1007/978-1-4939-6750-6_2 |
0.736 |
|
| 2016 |
Ziolkowski PA, Henderson IR. Interconnections between meiotic recombination and sequence polymorphism in plant genomes. The New Phytologist. PMID 27861941 DOI: 10.1111/Nph.14265 |
0.632 |
|
| 2016 |
Choi K, Reinhard C, Serra H, Ziolkowski PA, Underwood CJ, Zhao X, Hardcastle TJ, Yelina NE, Griffin C, Jackson M, Mézard C, McVean G, Copenhaver GP, Henderson IR. Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes. Plos Genetics. 12: e1006179. PMID 27415776 DOI: 10.1371/Journal.Pgen.1006179 |
0.792 |
|
| 2016 |
Choi K, Kim J, Müller SY, Oh M, Underwood C, Henderson I, Lee I. Regulation of microRNA-mediated developmental changes by the SWR1 chromatin remodeling complex in Arabidopsis thaliana. Plant Physiology. PMID 27208270 DOI: 10.1104/Pp.16.00332 |
0.763 |
|
| 2015 |
Yelina NE, Lambing C, Hardcastle TJ, Zhao X, Santos B, Henderson IR. DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis. Genes & Development. 29: 2183-202. PMID 26494791 DOI: 10.1101/gad.270876.115 |
0.465 |
|
| 2015 |
Zhai J, Bischof S, Wang H, Feng S, Lee TF, Teng C, Chen X, Park SY, Liu L, Gallego-Bartolome J, Liu W, Henderson IR, Meyers BC, Ausin I, Jacobsen SE. A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis. Cell. 163: 445-55. PMID 26451488 DOI: 10.1016/J.Cell.2015.09.032 |
0.8 |
|
| 2015 |
Choi K, Henderson IR. Meiotic recombination hotspots - a comparative view. The Plant Journal : For Cell and Molecular Biology. 83: 52-61. PMID 25925869 DOI: 10.1111/Tpj.12870 |
0.751 |
|
| 2015 |
Ziolkowski PA, Berchowitz LE, Lambing C, Yelina NE, Zhao X, Kelly KA, Choi K, Ziolkowska L, June V, Sanchez-Moran E, Franklin C, Copenhaver GP, Henderson IR. Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis. Elife. 4. PMID 25815584 DOI: 10.7554/Elife.03708 |
0.78 |
|
| 2015 |
Yelina N, Diaz P, Lambing C, Henderson IR. Epigenetic control of meiotic recombination in plants. Science China. Life Sciences. 58: 223-31. PMID 25651968 DOI: 10.1007/s11427-015-4811-x |
0.376 |
|
| 2015 |
Zhong X, Hale CJ, Nguyen M, Ausin I, Groth M, Hetzel J, Vashisht AA, Henderson IR, Wohlschlegel JA, Jacobsen SE. Domains rearranged methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: 911-6. PMID 25561521 DOI: 10.1073/Pnas.1423603112 |
0.822 |
|
| 2014 |
Amiard S, Olivier M, Allain E, Choi K, Smith-Unna R, Henderson IR, White CI, Gallego ME. Telomere stability and development of ctc1 mutants are rescued by inhibition of EJ recombination pathways in a telomerase-dependent manner. Nucleic Acids Research. 42: 11979-91. PMID 25274733 DOI: 10.1093/Nar/Gku897 |
0.713 |
|
| 2013 |
Yelina NE, Ziolkowski PA, Miller N, Zhao X, Kelly KA, Muñoz DF, Mann DJ, Copenhaver GP, Henderson IR. High-throughput analysis of meiotic crossover frequency and interference via flow cytometry of fluorescent pollen in Arabidopsis thaliana. Nature Protocols. 8: 2119-34. PMID 24113785 DOI: 10.1038/Nprot.2013.131 |
0.582 |
|
| 2013 |
Choi K, Zhao X, Kelly KA, Venn O, Higgins JD, Yelina NE, Hardcastle TJ, Ziolkowski PA, Copenhaver GP, Franklin FC, McVean G, Henderson IR. Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters. Nature Genetics. 45: 1327-36. PMID 24056716 DOI: 10.1038/Ng.2766 |
0.801 |
|
| 2012 |
Henderson IR. Control of meiotic recombination frequency in plant genomes. Current Opinion in Plant Biology. 15: 556-61. PMID 23017241 DOI: 10.1016/j.pbi.2012.09.002 |
0.312 |
|
| 2012 |
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP, Mezard C, Kelly KA, Henderson IR. Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants. Plos Genetics. 8: e1002844. PMID 22876192 DOI: 10.1371/Journal.Pgen.1002844 |
0.765 |
|
| 2010 |
Henderson IR, Deleris A, Wong W, Zhong X, Chin HG, Horwitz GA, Kelly KA, Pradhan S, Jacobsen SE. The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. Plos Genetics. 6: e1001182. PMID 21060858 DOI: 10.1371/Journal.Pgen.1001182 |
0.814 |
|
| 2010 |
Henderson IR, Chan SR, Cao X, Johnson L, Jacobsen SE. Accurate sodium bisulfite sequencing in plants. Epigenetics. 5: 47-9. PMID 20081358 DOI: 10.4161/Epi.5.1.10560 |
0.736 |
|
| 2008 |
Johnson LM, Law JA, Khattar A, Henderson IR, Jacobsen SE. SRA-domain proteins required for DRM2-mediated de novo DNA methylation. Plos Genetics. 4: e1000280. PMID 19043555 DOI: 10.1371/Journal.Pgen.1000280 |
0.809 |
|
| 2008 |
Henderson IR, Jacobsen SE. Sequencing sliced ends reveals microRNA targets. Nature Biotechnology. 26: 881-2. PMID 18688239 DOI: 10.1038/Nbt0808-881 |
0.455 |
|
| 2008 |
Henderson IR, Jacobsen SE. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes & Development. 22: 1597-606. PMID 18559476 DOI: 10.1101/Gad.1667808 |
0.647 |
|
| 2008 |
Li CF, Henderson IR, Song L, Fedoroff N, Lagrange T, Jacobsen SE. Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. Plos Genetics. 4: e27. PMID 18266474 DOI: 10.1371/Journal.Pgen.0040027 |
0.826 |
|
| 2007 |
Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature. 447: 418-24. PMID 17522675 DOI: 10.1038/Nature05917 |
0.638 |
|
| 2007 |
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE. Role of RNA polymerase IV in plant small RNA metabolism. Proceedings of the National Academy of Sciences of the United States of America. 104: 4536-41. PMID 17360559 DOI: 10.1073/Pnas.0611456104 |
0.631 |
|
| 2007 |
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, Jacobsen SE. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Current Biology : Cb. 17: 379-84. PMID 17239600 DOI: 10.1016/J.Cub.2007.01.009 |
0.675 |
|
| 2006 |
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Research. 16: 1276-88. PMID 16954541 DOI: 10.1101/Gr.5530106 |
0.522 |
|
| 2006 |
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell. 126: 1189-201. PMID 16949657 DOI: 10.1016/J.Cell.2006.08.003 |
0.769 |
|
| 2006 |
Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, Lagrange T, Pikaard CS, Jacobsen SE. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell. 126: 93-106. PMID 16839879 DOI: 10.1016/J.Cell.2006.05.032 |
0.786 |
|
| 2006 |
Chan SW, Henderson IR, Zhang X, Shah G, Chien JS, Jacobsen SE. RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. Plos Genetics. 2: e83. PMID 16741558 DOI: 10.1371/Journal.Pgen.0020083 |
0.77 |
|
| 2006 |
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nature Genetics. 38: 721-5. PMID 16699516 DOI: 10.1038/Ng1804 |
0.665 |
|
| 2005 |
Henderson IR, Liu F, Drea S, Simpson GG, Dean C. An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. Development (Cambridge, England). 132: 3597-607. PMID 16033802 DOI: 10.1242/Dev.01924 |
0.574 |
|
| 2005 |
Chan SW, Henderson IR, Jacobsen SE. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Reviews. Genetics. 6: 351-60. PMID 15861207 DOI: 10.1038/Nrg1601 |
0.757 |
|
| 2004 |
Henderson IR, Dean C. Control of Arabidopsis flowering: the chill before the bloom. Development (Cambridge, England). 131: 3829-38. PMID 15289433 DOI: 10.1242/Dev.01294 |
0.535 |
|
| 2003 |
Henderson IR, Shindo C, Dean C. The need for winter in the switch to flowering. Annual Review of Genetics. 37: 371-92. PMID 14616066 DOI: 10.1146/Annurev.Genet.37.110801.142640 |
0.536 |
|
| 2003 |
Simpson GG, Dijkwel PP, Quesada V, Henderson I, Dean C. FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition. Cell. 113: 777-87. PMID 12809608 DOI: 10.1016/S0092-8674(03)00425-2 |
0.605 |
|
| 1996 |
Owen P, Meehan M, Loughry-Doherty Hd, Henderson I. Phase-variable outer membrane proteins in Escherichia coli Fems Immunology and Medical Microbiology. 16: 63-76. PMID 8988388 DOI: 10.1111/J.1574-695X.1996.Tb00124.X |
0.302 |
|
| 1996 |
Henderson I, Whelan SM, Davis TO, Minton NP. Research letterGenetic characterisation of the botulinum toxin complex of Clostridium botulinum strain NCTC 2916 Fems Microbiology Letters. 140. PMID 8764477 DOI: 10.1016/0378-1097(96)00172-3 |
0.338 |
|
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