| Year |
Citation |
Score |
| 2023 |
Zhang K, Zhang L, Cui Y, Yang Y, Wu J, Liang J, Li X, Zhang X, Zhang Y, Guo Z, Zhang L, Chen S, Ruan J, Freeling M, Wang X, et al. The lack of negative association between TE load and subgenome dominance in synthesized allotetraploids. Proceedings of the National Academy of Sciences of the United States of America. 120: e2305208120. PMID 37816049 DOI: 10.1073/pnas.2305208120 |
0.322 |
|
| 2022 |
Burgess D, Chow HT, Grover JW, Freeling M, Mosher RA. Ovule siRNAs methylate protein-coding genes in trans. The Plant Cell. PMID 35781738 DOI: 10.1093/plcell/koac197 |
0.35 |
|
| 2021 |
Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604 |
0.652 |
|
| 2021 |
Hao Y, Mabry ME, Edger PP, Freeling M, Zheng C, Jin L, VanBuren R, Colle M, An H, Abrahams RS, Washburn JD, Qi X, Barry K, Daum C, Shu S, et al. The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome Research. PMID 33863805 DOI: 10.1101/gr.270033.120 |
0.828 |
|
| 2021 |
Yocca AE, Lu Z, Schmitz RJ, Freeling M, Edger PP. Evolution of conserved noncoding sequences in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33565589 DOI: 10.1093/molbev/msab042 |
0.685 |
|
| 2020 |
Grover JW, Burgess D, Kendall T, Baten A, Pokhrel S, King GJ, Meyers BC, Freeling M, Mosher RA. Abundant expression of maternal siRNAs is a conserved feature of seed development. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541052 DOI: 10.1073/Pnas.2001332117 |
0.355 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Freeling M, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/S41588-019-0380-4 |
0.732 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Freeling M, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/S41588-019-0356-4 |
0.783 |
|
| 2018 |
Cheng F, Wu J, Cai X, Liang J, Freeling M, Wang X. Gene retention, fractionation and subgenome differences in polyploid plants. Nature Plants. 4: 258-268. PMID 29725103 DOI: 10.1038/S41477-018-0136-7 |
0.524 |
|
| 2018 |
Grover JW, Kendall T, Baten A, Burgess D, Freeling M, King GJ, Mosher RA. Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa. The Plant Journal : For Cell and Molecular Biology. PMID 29569777 DOI: 10.1111/Tpj.13910 |
0.357 |
|
| 2017 |
Gordon SP, Contreras-Moreira B, Woods DP, Des Marais DL, Burgess D, Shu S, Stritt C, Roulin AC, Schackwitz W, Tyler L, Martin J, Lipzen A, Dochy N, Phillips J, Barry K, ... ... Freeling M, et al. Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature Communications. 8: 2184. PMID 29259172 DOI: 10.1038/S41467-017-02292-8 |
0.505 |
|
| 2017 |
Xu J, Wang Q, Freeling M, Zhang X, Xu Y, Mao Y, Tang X, Wu F, Lan H, Cao M, Rong T, Lisch D, Lu Y. Natural antisense transcripts are significantly involved in regulation of drought stress in maize. Nucleic Acids Research. PMID 28175341 DOI: 10.1093/Nar/Gkx085 |
0.687 |
|
| 2016 |
Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X. Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa. The New Phytologist. 211: 288-99. PMID 26871271 DOI: 10.1111/Nph.13884 |
0.697 |
|
| 2015 |
Freeling M, Scanlon MJ, Fowler JE. Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences. Current Opinion in Genetics & Development. 35: 110-8. PMID 26657818 DOI: 10.1016/J.Gde.2015.11.002 |
0.768 |
|
| 2015 |
VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527: 508-11. PMID 26560029 DOI: 10.1038/Nature15714 |
0.785 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Freeling M, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.826 |
|
| 2015 |
Burgess DG, Xu J, Freeling M. Advances in understanding cis regulation of the plant gene with an emphasis on comparative genomics. Current Opinion in Plant Biology. 27: 141-7. PMID 26247124 DOI: 10.1016/J.Pbi.2015.07.001 |
0.489 |
|
| 2015 |
Freeling M, Xu J, Woodhouse M, Lisch D. A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis. Molecular Plant. 8: 899-910. PMID 25743198 DOI: 10.1016/J.Molp.2015.02.009 |
0.829 |
|
| 2014 |
de Almeida AM, Yockteng R, Schnable J, Alvarez-Buylla ER, Freeling M, Specht CD. Co-option of the polarity gene network shapes filament morphology in angiosperms. Scientific Reports. 4: 6194. PMID 25168962 DOI: 10.1038/Srep06194 |
0.666 |
|
| 2014 |
Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Proceedings of the National Academy of Sciences of the United States of America. 111: 5283-8. PMID 24706847 DOI: 10.1073/Pnas.1402475111 |
0.793 |
|
| 2014 |
Burgess D, Freeling M. The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates. The Plant Cell. 26: 946-61. PMID 24681619 DOI: 10.1105/Tpc.113.121905 |
0.501 |
|
| 2014 |
Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M. Two evolutionarily distinct classes of paleopolyploidy. Molecular Biology and Evolution. 31: 448-54. PMID 24296661 DOI: 10.1093/Molbev/Mst230 |
0.714 |
|
| 2014 |
Bolduc N, Tyers RG, Freeling M, Hake S. Unequal redundancy in maize knotted1 homeobox genes. Plant Physiology. 164: 229-38. PMID 24218490 DOI: 10.1104/Pp.113.228791 |
0.801 |
|
| 2014 |
Freeling M. A Short Course on the Impact of Gene Duplications on the Evolution of Novelty Advances in Botanical Research. 69: 335-361. DOI: 10.1016/B978-0-12-417163-3.00013-5 |
0.377 |
|
| 2013 |
Turco G, Schnable JC, Pedersen B, Freeling M. Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses. Frontiers in Plant Science. 4: 170. PMID 23874343 DOI: 10.3389/Fpls.2013.00170 |
0.672 |
|
| 2013 |
Wang X, Freeling M. The Brassica genome. Frontiers in Plant Science. 4: 148. PMID 23755053 DOI: 10.3389/Fpls.2013.00148 |
0.409 |
|
| 2013 |
Subramaniam S, Wang X, Freeling M, Pires JC. The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa. Genome Biology and Evolution. 5: 646-60. PMID 23493633 DOI: 10.1093/Gbe/Evt035 |
0.739 |
|
| 2012 |
Spangler JB, Ficklin SP, Luo F, Freeling M, Feltus FA. Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules. Plos One. 7: e45041. PMID 23024789 DOI: 10.1371/Journal.Pone.0045041 |
0.459 |
|
| 2012 |
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, ... ... Freeling M, et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature. 488: 213-7. PMID 22801500 DOI: 10.1038/Nature11241 |
0.698 |
|
| 2012 |
Schnable JC, Wang X, Pires JC, Freeling M. Escape from preferential retention following repeated whole genome duplications in plants. Frontiers in Plant Science. 3: 94. PMID 22639677 DOI: 10.3389/Fpls.2012.00094 |
0.756 |
|
| 2012 |
Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu CR, Korkin D. Long identical multispecies elements in plant and animal genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: E1183-91. PMID 22496592 DOI: 10.1073/Pnas.1121356109 |
0.763 |
|
| 2012 |
Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC. Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Current Opinion in Plant Biology. 15: 131-9. PMID 22341793 DOI: 10.1016/J.Pbi.2012.01.015 |
0.84 |
|
| 2012 |
Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics. 190: 1563-74. PMID 22308264 DOI: 10.1534/Genetics.111.137349 |
0.749 |
|
| 2012 |
Schnable JC, Freeling M, Lyons E. Genome-wide analysis of syntenic gene deletion in the grasses. Genome Biology and Evolution. 4: 265-77. PMID 22275519 DOI: 10.1093/Gbe/Evs009 |
0.805 |
|
| 2012 |
Zhang W, Wu Y, Schnable JC, Zeng Z, Freeling M, Crawford GE, Jiang J. High-resolution mapping of open chromatin in the rice genome. Genome Research. 22: 151-62. PMID 22110044 DOI: 10.1101/Gr.131342.111 |
0.645 |
|
| 2012 |
Spangler JB, Subramaniam S, Freeling M, Feltus FA. Evidence of function for conserved noncoding sequences in Arabidopsis thaliana. The New Phytologist. 193: 241-52. PMID 21955124 DOI: 10.1111/J.1469-8137.2011.03916.X |
0.7 |
|
| 2011 |
Schnable JC, Pedersen BS, Subramaniam S, Freeling M. Dose-sensitivity, conserved non-coding sequences, and duplicate gene retention through multiple tetraploidies in the grasses. Frontiers in Plant Science. 2: 2. PMID 22645525 DOI: 10.3389/Fpls.2011.00002 |
0.79 |
|
| 2011 |
Woodhouse MR, Tang H, Freeling M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. The Plant Cell. 23: 4241-53. PMID 22180627 DOI: 10.1105/Tpc.111.093567 |
0.423 |
|
| 2011 |
Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/Journal.Pgen.1002372 |
0.618 |
|
| 2011 |
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, ... Freeling M, et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 43: 1035-9. PMID 21873998 DOI: 10.1038/Ng.919 |
0.625 |
|
| 2011 |
Cande WZ, Freeling M. Inna Golubovskaya: the life of a geneticist studying meiosis. Genetics. 188: 491-8. PMID 21742729 DOI: 10.1534/Genetics.111.130039 |
0.394 |
|
| 2011 |
Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M. Screening synteny blocks in pairwise genome comparisons through integer programming. Bmc Bioinformatics. 12: 102. PMID 21501495 DOI: 10.1186/1471-2105-12-102 |
0.753 |
|
| 2011 |
Schnable JC, Freeling M. Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. Plos One. 6: e17855. PMID 21423772 DOI: 10.1371/Journal.Pone.0017855 |
0.715 |
|
| 2011 |
Schnable JC, Springer NM, Freeling M. Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proceedings of the National Academy of Sciences of the United States of America. 108: 4069-74. PMID 21368132 DOI: 10.1073/Pnas.1101368108 |
0.708 |
|
| 2011 |
Lyons E, Freeling M, Kustu S, Inwood W. Using genomic sequencing for classical genetics in E. coli K12. Plos One. 6: e16717. PMID 21364914 DOI: 10.1371/Journal.Pone.0016717 |
0.683 |
|
| 2011 |
Pedersen BS, Tang H, Freeling M. Gobe: an interactive, web-based tool for comparative genomic visualization. Bioinformatics (Oxford, England). 27: 1015-6. PMID 21296748 DOI: 10.1093/Bioinformatics/Btr056 |
0.327 |
|
| 2010 |
Li H, Freeling M, Lisch D. Epigenetic reprogramming during vegetative phase change in maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 22184-9. PMID 21135217 DOI: 10.1073/Pnas.1016884108 |
0.658 |
|
| 2010 |
Woodward JB, Abeydeera ND, Paul D, Phillips K, Rapala-Kozik M, Freeling M, Begley TP, Ealick SE, McSteen P, Scanlon MJ. A maize thiamine auxotroph is defective in shoot meristem maintenance. The Plant Cell. 22: 3305-17. PMID 20971897 DOI: 10.1105/Tpc.110.077776 |
0.769 |
|
| 2010 |
Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. Plos Biology. 8: e1000409. PMID 20613864 DOI: 10.1371/Journal.Pbio.1000409 |
0.828 |
|
| 2010 |
Kane J, Freeling M, Lyons E. The evolution of a high copy gene array in Arabidopsis. Journal of Molecular Evolution. 70: 531-44. PMID 20495794 DOI: 10.1007/S00239-010-9350-2 |
0.699 |
|
| 2010 |
Woodhouse MR, Pedersen B, Freeling M. Transposed genes in Arabidopsis are often associated with flanking repeats. Plos Genetics. 6: e1000949. PMID 20485521 DOI: 10.1371/Journal.Pgen.1000949 |
0.515 |
|
| 2010 |
Paterson AH, Freeling M, Tang H, Wang X. Insights from the comparison of plant genome sequences. Annual Review of Plant Biology. 61: 349-72. PMID 20441528 DOI: 10.1146/Annurev-Arplant-042809-112235 |
0.473 |
|
| 2009 |
Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annual Review of Plant Biology. 60: 433-53. PMID 19575588 DOI: 10.1146/Annurev.Arplant.043008.092122 |
0.473 |
|
| 2009 |
Freeling M, Subramaniam S. Conserved noncoding sequences (CNSs) in higher plants. Current Opinion in Plant Biology. 12: 126-32. PMID 19249238 DOI: 10.1016/J.Pbi.2009.01.005 |
0.706 |
|
| 2009 |
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, ... ... Freeling M, et al. The Sorghum bicolor genome and the diversification of grasses. Nature. 457: 551-6. PMID 19189423 DOI: 10.1038/Nature07723 |
0.728 |
|
| 2009 |
Singh J, Freeling M, Lisch D. Correction: A Position Effect on the Heritability of Epigenetic Silencing Plos Genetics. 5. DOI: 10.1371/Annotation/Dd58C52F-161D-4A3F-B560-C9Fd78307F85 |
0.627 |
|
| 2008 |
Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. Plant Physiology. 148: 1772-81. PMID 18952863 DOI: 10.1104/Pp.108.124867 |
0.803 |
|
| 2008 |
Singh J, Freeling M, Lisch D. A position effect on the heritability of epigenetic silencing. Plos Genetics. 4: e1000216. PMID 18846225 DOI: 10.1371/Journal.Pgen.1000216 |
0.712 |
|
| 2008 |
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Research. 18: 1924-37. PMID 18836034 DOI: 10.1101/Gr.081026.108 |
0.801 |
|
| 2008 |
Freeling M. The evolutionary position of subfunctionalization, downgraded. Genome Dynamics. 4: 25-40. PMID 18756075 DOI: 10.1159/000126004 |
0.4 |
|
| 2008 |
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Freeling M, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856 |
0.712 |
|
| 2008 |
Lyons E, Freeling M. How to usefully compare homologous plant genes and chromosomes as DNA sequences. The Plant Journal : For Cell and Molecular Biology. 53: 661-73. PMID 18269575 DOI: 10.1111/J.1365-313X.2007.03326.X |
0.698 |
|
| 2008 |
Lyons E, Pedersen B, Kane J, Freeling M. The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids Tropical Plant Biology. 1: 181-190. DOI: 10.1007/S12042-008-9017-Y |
0.676 |
|
| 2007 |
Freeling M, Rapaka L, Lyons E, Pedersen B, Thomas BC. G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis. The Plant Cell. 19: 1441-57. PMID 17496117 DOI: 10.1105/Tpc.107.050419 |
0.706 |
|
| 2007 |
Thomas BC, Rapaka L, Lyons E, Pedersen B, Freeling M. Arabidopsis intragenomic conserved noncoding sequence. Proceedings of the National Academy of Sciences of the United States of America. 104: 3348-53. PMID 17301222 DOI: 10.1073/Pnas.0611574104 |
0.726 |
|
| 2006 |
Woodhouse MR, Freeling M, Lisch D. Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. Plos Biology. 4: e339. PMID 16968137 DOI: 10.1371/Journal.Pbio.0040339 |
0.703 |
|
| 2006 |
Freeling M, Thomas BC. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Research. 16: 805-14. PMID 16818725 DOI: 10.1101/Gr.3681406 |
0.467 |
|
| 2006 |
Thomas BC, Pedersen B, Freeling M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Research. 16: 934-46. PMID 16760422 DOI: 10.1101/Gr.4708406 |
0.462 |
|
| 2006 |
Osmont KS, Sadeghian N, Freeling M. Mosaic analysis of extended auricle1 (eta1) suggests that a two-way signaling pathway is involved in positioning the blade/sheath boundary in Zea mays. Developmental Biology. 295: 1-12. PMID 16684518 DOI: 10.1016/J.Ydbio.2005.11.012 |
0.778 |
|
| 2006 |
Diao X, Freeling M, Lisch D. Horizontal transfer of a plant transposon. Plos Biology. 4: e5. PMID 16336045 DOI: 10.1371/Journal.Pbio.0040005 |
0.708 |
|
| 2006 |
Woodhouse MR, Freeling M, Lisch D. The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics. 172: 579-92. PMID 16219782 DOI: 10.1534/Genetics.105.051383 |
0.725 |
|
| 2006 |
Paterson AH, Freeling M, Sasaki T. 5 Grains of Knowledge: Genomics of Model Cereals Cold Spring Harbor Monograph Archive. 46: 97-116. DOI: 10.1101/087969807.46.97 |
0.393 |
|
| 2005 |
Paterson AH, Freeling M, Sasaki T. Grains of knowledge: genomics of model cereals. Genome Research. 15: 1643-50. PMID 16339361 DOI: 10.1101/Gr.3725905 |
0.421 |
|
| 2005 |
Slotkin RK, Freeling M, Lisch D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nature Genetics. 37: 641-4. PMID 15908951 DOI: 10.1038/Ng1576 |
0.827 |
|
| 2004 |
Bauer P, Lubkowitz M, Tyers R, Nemoto K, Meeley RB, Goff SA, Freeling M. Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses. Planta. 219: 359-68. PMID 15034715 DOI: 10.1007/S00425-004-1233-6 |
0.843 |
|
| 2004 |
Langham RJ, Walsh J, Dunn M, Ko C, Goff SA, Freeling M. Genomic duplication, fractionation and the origin of regulatory novelty. Genetics. 166: 935-45. PMID 15020478 DOI: 10.1534/Genetics.166.2.935 |
0.517 |
|
| 2003 |
Osmont KS, Jesaitis LA, Freeling M. The extended auricle1 (eta1) gene is essential for the genetic network controlling postinitiation maize leaf development. Genetics. 165: 1507-19. PMID 14668398 |
0.809 |
|
| 2003 |
Slotkin RK, Freeling M, Lisch D. Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics. 165: 781-97. PMID 14573488 |
0.805 |
|
| 2003 |
May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R. Maize-targeted mutagenesis: A knockout resource for maize. Proceedings of the National Academy of Sciences of the United States of America. 100: 11541-6. PMID 12954979 DOI: 10.1073/Pnas.1831119100 |
0.81 |
|
| 2003 |
Inada DC, Bashir A, Lee C, Thomas BC, Ko C, Goff SA, Freeling M. Conserved noncoding sequences in the grasses. Genome Research. 13: 2030-41. PMID 12952874 DOI: 10.1101/Gr.1280703 |
0.486 |
|
| 2003 |
Theodoris G, Inada N, Freeling M. Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development. Proceedings of the National Academy of Sciences of the United States of America. 100: 6837-42. PMID 12750468 DOI: 10.1073/Pnas.1132113100 |
0.401 |
|
| 2003 |
Kaplinsky NJ, Freeling M. Combinatorial control of meristem identity in maize inflorescences. Development (Cambridge, England). 130: 1149-58. PMID 12571106 DOI: 10.1242/Dev.00336 |
0.808 |
|
| 2003 |
Dong Q, Roy L, Freeling M, Walbot V, Brendel V. ZmDB, an integrated database for maize genome research. Nucleic Acids Research. 31: 244-7. PMID 12519992 DOI: 10.1093/Nar/Gkg082 |
0.621 |
|
| 2002 |
Nelson JM, Lane B, Freeling M. Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis. Development (Cambridge, England). 129: 4581-9. PMID 12223414 |
0.581 |
|
| 2002 |
Kaplinsky NJ, Braun DM, Penterman J, Goff SA, Freeling M. Utility and distribution of conserved noncoding sequences in the grasses. Proceedings of the National Academy of Sciences of the United States of America. 99: 6147-51. PMID 11972021 DOI: 10.1073/Pnas.052139599 |
0.833 |
|
| 2002 |
Kaplinsky N, Braun D, Lisch D, Hay A, Hake S, Freeling M. Biodiversity (Communications arising): maize transgene results in Mexico are artefacts. Nature. 416: 601-2; discussion 60. PMID 11935145 DOI: 10.1038/Nature739 |
0.777 |
|
| 2001 |
Lisch DR, Freeling M, Langham RJ, Choy MY. Mutator transposase is widespread in the grasses. Plant Physiology. 125: 1293-303. PMID 11244110 DOI: 10.1104/Pp.125.3.1293 |
0.731 |
|
| 2001 |
Freeling M. Grasses as a single genetic system: reassessment 2001. Plant Physiology. 125: 1191-7. PMID 11244100 DOI: 10.1104/Pp.125.3.1191 |
0.335 |
|
| 2001 |
Bennetzen J, Buckler E, Chandler V, Doebley J, Dorweiler J, Gaut B, Freeling M, Hake S, Kellogg E, Poethig RS, Walbot V, Wessler S. Genetic Evidence and the Origin of Maize Latin American Antiquity. 12: 84-86. DOI: 10.2307/971759 |
0.777 |
|
| 2000 |
Girard L, Freeling M. Mutator-suppressible alleles of rough sheath1 and liguleless3 in maize reveal multiple mechanisms for suppression. Genetics. 154: 437-46. PMID 10629001 |
0.315 |
|
| 2000 |
Hay JO, Moulia B, Lane B, Freeling M, Silk WK. Biomechanical analysis of the rolled (Rld) leaf phenotype of maize American Journal of Botany. 87: 625-633. DOI: 10.2307/2656848 |
0.307 |
|
| 1999 |
Walsh J, Freeling M. The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. The Plant Journal : For Cell and Molecular Biology. 19: 489-95. PMID 10504571 DOI: 10.1046/J.1365-313X.1999.00541.X |
0.38 |
|
| 1999 |
Tsiantis M, Schneeberger R, Golz JF, Freeling M, Langdale JA. The maize rough sheath2 gene and leaf development programs in monocot and dicot plants. Science (New York, N.Y.). 284: 154-6. PMID 10102817 DOI: 10.1126/Science.284.5411.154 |
0.464 |
|
| 1999 |
Muehlbauer GJ, Fowler JE, Girard L, Tyers R, Harper L, Freeling M. Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf. Plant Physiology. 119: 651-62. PMID 9952462 DOI: 10.1104/Pp.119.2.651 |
0.795 |
|
| 1999 |
Lisch D, Girard L, Donlin M, Freeling M. Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins. Genetics. 151: 331-41. PMID 9872971 |
0.687 |
|
| 1998 |
Schichnes D, Freeling M. Lax midrib1-O, a systemic, heterochronic mutant of maize. American Journal of Botany. 85: 481. PMID 21684930 DOI: 10.2307/2446431 |
0.327 |
|
| 1998 |
Schneeberger R, Tsiantis M, Freeling M, Langdale JA. The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development. Development (Cambridge, England). 125: 2857-65. PMID 9655808 |
0.391 |
|
| 1998 |
Walsh J, Waters CA, Freeling M. The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary. Genes & Development. 12: 208-18. PMID 9490265 DOI: 10.1101/Gad.12.2.208 |
0.452 |
|
| 1998 |
Phillips RL, Freeling M. Plant genomics and our food supply: An introduction Proceedings of the National Academy of Sciences of the United States of America. 95: 1969-1970. PMID 9482815 DOI: 10.1073/Pnas.95.5.1969 |
0.451 |
|
| 1997 |
Schichnes D, Schneeberger R, Freeling M. Induction of leaves directly from leaves in the maize mutant Lax midrib1-O. Developmental Biology. 186: 36-45. PMID 9188751 DOI: 10.1006/Dbio.1997.8579 |
0.334 |
|
| 1997 |
Moreno MA, Harper LC, Krueger RW, Dellaporta SL, Freeling M. liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis Genes and Development. 11: 616-628. PMID 9119226 DOI: 10.1101/Gad.11.5.616 |
0.415 |
|
| 1997 |
Bennetzen JL, Freeling M. The unified grass genome: Synergy in synteny Genome Research. 7: 301-306. PMID 9110169 DOI: 10.1101/Gr.7.4.301 |
0.594 |
|
| 1997 |
Scanlon MJ, Freeling M. Clonal sectors reveal that a specific meristematic domain is not utilized in the maize mutant narrow sheath. Developmental Biology. 182: 52-66. PMID 9073445 DOI: 10.1006/Dbio.1996.8452 |
0.626 |
|
| 1997 |
Scanlon MJ, Myers AM, Schneeberger RG, Freeling M. The maize gene empty pericarp-2 is required for progression beyond early stages of embryogenesis Plant Journal. 12: 901-909. DOI: 10.1046/J.1365-313X.1997.12040901.X |
0.621 |
|
| 1996 |
Sylvester AW, Smith L, Freeling M. Acquisition of identity in the developing leaf Annual Review of Cell and Developmental Biology. 12: 257-304. PMID 8970728 DOI: 10.1146/Annurev.Cellbio.12.1.257 |
0.746 |
|
| 1996 |
Scanlon MJ, Schneeberger RG, Freeling M. The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain. Development (Cambridge, England). 122: 1683-91. PMID 8674408 |
0.592 |
|
| 1996 |
Fowler JE, Freeling M. Genetic analysis of mutations that alter cell fates in maize leaves: dominant Liguleless mutations. Developmental Genetics. 18: 198-222. PMID 8631155 DOI: 10.1002/(Sici)1520-6408(1996)18:3<198::Aid-Dvg2>3.0.Co;2-4 |
0.595 |
|
| 1996 |
Harper L, Freeling M. Studies on early leaf development Current Opinion in Biotechnology. 7: 139-144. DOI: 10.1016/S0958-1669(96)80003-6 |
0.392 |
|
| 1995 |
Donlin MJ, Lisch D, Freeling M. Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family. The Plant Cell. 7: 1989-2000. PMID 8718617 DOI: 10.1105/Tpc.7.12.1989 |
0.663 |
|
| 1995 |
Kloeckener-Gruissem B, Freeling M. Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles. Proceedings of the National Academy of Sciences of the United States of America. 92: 1836-40. PMID 7892187 DOI: 10.1073/Pnas.92.6.1836 |
0.439 |
|
| 1995 |
Lisch D, Chomet P, Freeling M. Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line. Genetics. 139: 1777-96. PMID 7789777 |
0.643 |
|
| 1995 |
Schneeberger RG, Becraft PW, Hake S, Freeling M. Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf. Genes & Development. 9: 2292-304. PMID 7557382 DOI: 10.1101/Gad.9.18.2292 |
0.804 |
|
| 1994 |
Becraft PW, Freeling M. Genetic analysis of Rough sheath1 developmental mutants of maize. Genetics. 136: 295-311. PMID 8138166 DOI: 10.1016/0168-9525(94)90089-2 |
0.682 |
|
| 1994 |
Winkler R, Freeling M. Physiological genetics of the dominant gibberellin-nonresponsive maize dwarfs, Dwarf8 and Dwarf9 Planta. 193. DOI: 10.1007/Bf00201811 |
0.302 |
|
| 1993 |
Dawe RK, Lachmansingh AR, Freeling M. Transposon-mediated mutations in the untranslated leader of maize Adh1 that increase and decrease pollen-specific gene expression. The Plant Cell. 5: 311-9. PMID 8385517 DOI: 10.1105/Tpc.5.3.311 |
0.492 |
|
| 1993 |
Bennetzen JL, Freeling M. Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends in Genetics : Tig. 9: 259-61. PMID 8379002 DOI: 10.1016/0168-9525(93)90001-X |
0.43 |
|
| 1993 |
Sinha N, Hake S, Freeling M. Genetic and molecular analysis of leaf development. Current Topics in Developmental Biology. 28: 47-80. PMID 8348842 DOI: 10.1016/S0070-2153(08)60209-4 |
0.808 |
|
| 1993 |
Vogel JM, Roth B, Cigan M, Freeling M. Expression of the two maize TATA binding protein genes and function of the encoded TBP proteins by complementation in yeast. The Plant Cell. 5: 1627-38. PMID 8312743 DOI: 10.1105/Tpc.5.11.1627 |
0.474 |
|
| 1992 |
Kloeckener-Gruissem B, Vogel JM, Freeling M. The TATA box promoter region of maize Adh1 affects its organ-specific expression. The Embo Journal. 11: 157-66. PMID 1740103 DOI: 10.1002/J.1460-2075.1992.Tb05038.X |
0.376 |
|
| 1992 |
Bailey-Serres J, Tom J, Freeling M. Expression and distribution of cytosolic 6-phosphogluconate dehydrogenase isozymes in maize. Biochemical Genetics. 30: 233-46. PMID 1616479 DOI: 10.1007/Bf02396214 |
0.647 |
|
| 1992 |
Freeling M, Bertrand-Garcia R, Sinha N. Maize mutants and variants altering developmental time and their heterochronic interactions. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 14: 227-36. PMID 1596272 DOI: 10.1002/Bies.950140405 |
0.695 |
|
| 1992 |
Becraft PW, Freeling M. Cell interactions in plants. Current Opinion in Genetics & Development. 2: 571-5. PMID 1525509 DOI: 10.1016/S0959-437X(05)80174-1 |
0.698 |
|
| 1992 |
Freeling M. A conceptual framework for maize leaf development. Developmental Biology. 153: 44-58. PMID 1516751 DOI: 10.1016/0012-1606(92)90090-4 |
0.403 |
|
| 1992 |
Freeling M. The dynamic genome: Barbara McClintock's ideas in the century of genetics Trends in Genetics. 8: 463. DOI: 10.1016/0168-9525(92)90333-Y |
0.33 |
|
| 1991 |
Becraft PW, Freeling M. Sectors of liguleless-1 tissue interrupt an inductive signal during maize leaf development. The Plant Cell. 3: 801-7. PMID 1820819 DOI: 10.1105/Tpc.3.8.801 |
0.71 |
|
| 1991 |
Chomet P, Lisch D, Hardeman KJ, Chandler VL, Freeling M. Identification of a regulatory transposon that controls the Mutator transposable element system in maize. Genetics. 129: 261-70. PMID 1657702 |
0.658 |
|
| 1991 |
Dawe RK, Freeling M. Cell lineage and its consequences in higher plants The Plant Journal. 1: 3-8. DOI: 10.1111/J.1365-313X.1991.00003.X |
0.32 |
|
| 1990 |
Bailey-Serres J, Freeling M. Hypoxic stress-induced changes in ribosomes of maize seedling roots. Plant Physiology. 94: 1237-43. PMID 16667823 DOI: 10.1104/Pp.94.3.1237 |
0.575 |
|
| 1990 |
Becraft PW, Bongard-Pierce DK, Sylvester AW, Poethig RS, Freeling M. The liguleless-1 gene acts tissue specifically in maize leaf development. Developmental Biology. 141: 220-32. PMID 2391003 DOI: 10.1016/0012-1606(90)90117-2 |
0.821 |
|
| 1990 |
Dawe RK, Freeling M. Clonal analysis of the cell lineages in the male flower of maize. Developmental Biology. 142: 233-45. PMID 2172058 DOI: 10.1016/0012-1606(90)90167-H |
0.324 |
|
| 1990 |
Martienssen R, Barkan A, Taylor WC, Freeling M. Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize Genes and Development. 4: 331-343. PMID 2159936 DOI: 10.1101/Gad.4.3.331 |
0.692 |
|
| 1990 |
Sylvester AW, Cande WZ, Freeling M. Division and differentiation during normal and liguleless-1 maize leaf development. Development (Cambridge, England). 110: 985-1000. PMID 2088734 |
0.683 |
|
| 1990 |
Freeling M. Patterns in plant development (2nd edn) Trends in Genetics. 6: 97. DOI: 10.1016/0168-9525(90)90102-C |
0.308 |
|
| 1989 |
Johns MA, Babcock MS, Fuerstenberg SM, Fuerstenberg SI, Freeling M, Simpson RB. An unusually compact retrotransposon in maize. Plant Molecular Biology. 12: 633-42. PMID 24271196 DOI: 10.1007/Bf00044154 |
0.714 |
|
| 1989 |
Hake S, Vollbrecht E, Freeling M. Cloning Knotted, the dominant morphological mutant in maize using Ds2 as a transposon tag. The Embo Journal. 8: 15-22. PMID 16453866 |
0.743 |
|
| 1989 |
Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator Embo Journal. 8: 1633-1639. PMID 2548850 |
0.689 |
|
| 1989 |
Martienssen RA, Barkan A, Freeling M, Taylor WC. Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator. The Embo Journal. 8: 1633-1639. DOI: 10.1002/J.1460-2075.1989.Tb03553.X |
0.714 |
|
| 1989 |
Hake S, Vollbrecht E, Freeling M. Cloning Knotted,
the dominant morphological mutant in maize using Ds2
as a transposon tag The Embo Journal. 8: 15-22. DOI: 10.1002/J.1460-2075.1989.Tb03343.X |
0.817 |
|
| 1988 |
BAILEY-SERRES J, KLOECKENER-GRUISSEM B, FREELING M. Genetic and molecular approaches to the study of the anaerobic response and tissue specific gene expression in maize Plant, Cell and Environment. 11: 351-357. DOI: 10.1111/J.1365-3040.1988.Tb01359.X |
0.648 |
|
| 1988 |
Freeling M. Mutation, developmental selection, and plant evolution Cell. 55: 934-935. DOI: 10.1016/0092-8674(88)90237-1 |
0.351 |
|
| 1987 |
Chen CH, Oishi KK, Kloeckener-Gruissem B, Freeling M. Organ-specific expression of maize Adh1 is altered after a Mu transposon insertion. Genetics. 116: 469-77. PMID 3038674 |
0.349 |
|
| 1987 |
Sundaresan V, Freeling M. An extrachromosomal form of the Mu transposons of maize. Proceedings of the National Academy of Sciences of the United States of America. 84: 4924-8. PMID 3037528 DOI: 10.1073/Pnas.84.14.4924 |
0.561 |
|
| 1986 |
Springer B, Werr W, Starlinger P, Bennett DC, Zokolica M, Freeling M. The Shrunken gene on chromosome 9 of Zea mays L is expressed in various plant tissues and encodes an anaerobic protein. Molecular & General Genetics : Mgg. 205: 461-8. PMID 2436026 |
0.344 |
|
| 1986 |
Hake S, Freeling M. Analysis of genetic mosaics shows that the extra epidermal cell divisions in Knotted mutant maize plants are induced by adjacent mesophyll cells Nature. 320: 621-623. DOI: 10.1038/320621A0 |
0.725 |
|
| 1986 |
Lillis M, Freeling M. Mu transposons in maize Trends in Genetics. 2: 183-188. DOI: 10.1016/0168-9525(86)90221-0 |
0.414 |
|
| 1986 |
Vayda ME, Freeling M. Insertion of the Mu1 transposable element into the first intron of maize Adh1 interferes with transcript elongation but does not disrupt chromatin structure Plant Molecular Biology. 6: 441-454. DOI: 10.1007/Bf00027136 |
0.463 |
|
| 1985 |
Freeling M, Hake S. Developmental genetics of mutants that specify knotted leaves in maize. Genetics. 111: 617-34. PMID 17246303 |
0.738 |
|
| 1985 |
Johns MA, Mottinger J, Freeling M. A low copy number, copia-like transposon in maize Embo Journal. 4: 1093-1102. PMID 2988938 DOI: 10.1002/J.1460-2075.1985.Tb03745.X |
0.723 |
|
| 1985 |
Hake S, Kelley PM, Taylor WC, Freeling M. Coordinate induction of alcohol dehydrogenase 1, aldolase, and other anaerobic RNAs in maize. The Journal of Biological Chemistry. 260: 5050-4. PMID 2580829 |
0.681 |
|
| 1984 |
Roberts JK, Callis J, Jardetzky O, Walbot V, Freeling M. Cytoplasmic acidosis as a determinant of flooding intolerance in plants. Proceedings of the National Academy of Sciences of the United States of America. 81: 6029-33. PMID 6592598 DOI: 10.1073/Pnas.81.19.6029 |
0.521 |
|
| 1984 |
Bennetzen JL, Swanson J, Taylor WC, Freeling M. DNA insertion in the first intron of maize Adh1 affects message levels: Cloning of progenitor and mutant Adh1 alleles Proceedings of the National Academy of Sciences of the United States of America. 81: 4125-4128. PMID 6330742 DOI: 10.1073/Pnas.81.13.4125 |
0.635 |
|
| 1984 |
Mottinger JP, Johns MA, Freeling M. Mutations of the Adh1 gene in maize following infection with barley stripe mosaic virus Mgg Molecular &Amp; General Genetics. 195: 367-369. PMID 6092861 DOI: 10.1007/Bf00332775 |
0.692 |
|
| 1984 |
Freeling M. Plant Transposable Elements and Insertion Sequences Annual Review of Plant Biology. 35: 277-298. DOI: 10.1146/Annurev.Pp.35.060184.001425 |
0.376 |
|
| 1984 |
Hake S, Taylor WC, Freeling M. Molecular analyses of genetically stable mutants of the maize Adh1 gene Mgg Molecular &Amp; General Genetics. 194: 42-48. DOI: 10.1007/Bf00383494 |
0.752 |
|
| 1984 |
Döring HP, Freeling M, Hake S, Johns MA, Kunze R, Merckelbach A, Salamini F, Starlinger P. A Ds-mutation of the Adh1 gene in Zea mays L Mgg Molecular &Amp; General Genetics. 193: 199-204. DOI: 10.1007/Bf00330667 |
0.813 |
|
| 1982 |
Strommer JN, Hake S, Bennetzen J, Taylor WC, Freeling M. Regulatory mutants of the maize Adh1 gene caused by DNA insertions Nature. 300: 542-544. DOI: 10.1038/300542A0 |
0.806 |
|
| 1982 |
Freeling M, Cheng DS, Alleman M. Mutant alleles that are altered in quantitative, organ-specific behavior Developmental Genetics. 3: 179-196. DOI: 10.1002/Dvg.1020030302 |
0.381 |
|
| 1981 |
Freeling M. Toward monitoring specific DNA lesions in the gene by using pollen systems. Environmental Health Perspectives. 37: 13-7. PMID 7007034 DOI: 10.1289/Ehp.813713 |
0.339 |
|
| 1980 |
Okimoto R, Sachs MM, Porter EK, Freeling M. Patterns of polypeptide synthesis in various maize organs under anaerobiosis. Planta. 150: 89-94. PMID 24306530 DOI: 10.1007/Bf00385619 |
0.637 |
|
| 1980 |
Sachs MM, Freeling M, Okimoto R. The anaerobic proteins of maize. Cell. 20: 761-7. PMID 7418006 DOI: 10.1016/0092-8674(80)90322-0 |
0.654 |
|
| 1978 |
Freeling M. Maize Adh1 as a monitor of environmental mutagens. Environmental Health Perspectives. 27: 91-7. PMID 367778 DOI: 10.1289/Ehp.782791 |
0.364 |
|
| 1978 |
Freeling M, Cheng DSK. Radiation-induced alcohol dehydrogenase mutants in maize following allyl alcohol selection of pollen Genetical Research. 31: 107-129. DOI: 10.1017/S0016672300017882 |
0.35 |
|
| 1978 |
Sachs MM, Freeling M. Selective synthesis of alcohol dehydrogenase during anaerobic treatment of maize Molecular and General Genetics Mgg. 161: 111-115. DOI: 10.1007/Bf00274180 |
0.644 |
|
| 1977 |
Freeling M. Spontaneous forward mutation versus reversion frequencies for maize Adh1 in pollen. Nature. 267: 154-6. PMID 16073427 DOI: 10.1038/267154A0 |
0.42 |
|
| 1974 |
Freeling M. Dimerization of multiple maize ADHs studied in vivo and in vitro. Biochemical Genetics. 12: 407-17. PMID 4461035 DOI: 10.1007/Bf00486645 |
0.377 |
|
| 1973 |
Freeling M, Schwartz D. Genetic relationships between the multiple alcohol dehydrogenases of maize. Biochemical Genetics. 8: 27-36. PMID 4348257 DOI: 10.1007/Bf00485554 |
0.622 |
|
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