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Justin W. Walley, Ph.D. - Publications

Affiliations: 
Plant Biology Iowa State University, Ames, IA, United States 
Area:
Botany Biology
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Malik S, Walley JW. Unveiling a new regulator: vacuolar V-ATPase mediates brassinosteroid signaling in Arabidopsis. Molecular Plant. PMID 38155571 DOI: 10.1016/j.molp.2023.12.021  0.312
2023 Watkins JM, Montes C, Clark NM, Song G, Oliveira CC, Mishra B, Brachova L, Seifert CM, Mitchell MS, Yang J, Braga Dos Reis PA, Urano D, Muktar MS, Walley JW, Jones AM. Phosphorylation dynamics in a flg22-induced, G-protein dependent network reveals the RGS1 phosphatase. Molecular & Cellular Proteomics : McP. 100705. PMID 38135118 DOI: 10.1016/j.mcpro.2023.100705  0.676
2023 Clark NM, Hurgobin B, Kelley DR, Lewsey MG, Walley JW. A Practical Guide to Inferring Multi-Omics Networks in Plant Systems. Methods in Molecular Biology (Clifton, N.J.). 2698: 233-257. PMID 37682479 DOI: 10.1007/978-1-0716-3354-0_15  0.697
2023 Yin L, Zander M, Huang SC, Xie M, Song L, Guzm N JPS, Hann E, Shanbhag BK, Ng S, Jain S, Janssen BJ, Clark NM, Walley JW, Beddoe T, Bar-Joseph Z, et al. Transcription Factor Dynamics in Cross-Regulation of Plant Hormone Signaling Pathways. Biorxiv : the Preprint Server For Biology. PMID 36945593 DOI: 10.1101/2023.03.07.531630  0.735
2022 McReynolds MR, Dash L, Montes C, Draves MA, Lang MG, Walley JW, Kelley DR. Temporal and spatial auxin responsive networks in maize primary roots. Quantitative Plant Biology. 3: e21. PMID 37077976 DOI: 10.1017/qpb.2022.17  0.398
2022 Liao CY, Pu Y, Nolan TM, Montes C, Guo H, Walley JW, Yin Y, Bassham DC. Brassinosteroids modulate autophagy through phosphorylation of RAPTOR1B by the GSK3-like kinase BIN2 in Arabidopsis. Autophagy. 1-18. PMID 36151786 DOI: 10.1080/15548627.2022.2124501  0.369
2022 Wang P, Clark NM, Nolan TM, Song G, Whitham OG, Liao CY, Montes-Serey C, Bassham DC, Walley JW, Yin Y, Guo H. FERONIA functions through Target of Rapamycin (TOR) to negatively regulate autophagy. Frontiers in Plant Science. 13: 961096. PMID 36082288 DOI: 10.3389/fpls.2022.961096  0.706
2022 Montes C, Wang P, Liao CY, Nolan TM, Song G, Clark NM, Elmore JM, Guo H, Bassham DC, Yin Y, Walley JW. Integration of multi-omics data reveals interplay between brassinosteroid and TORC signaling in Arabidopsis. The New Phytologist. PMID 35892179 DOI: 10.1111/nph.18404  0.756
2022 Wang P, Clark NM, Nolan TM, Song G, Bartz PM, Liao CY, Montes-Serey C, Katz E, Polko JK, Kieber JJ, Kliebenstein DJ, Bassham DC, Walley JW, Yin Y, Hongqing G. Integrated omics reveal novel functions and underlying mechanisms of the receptor kinase FERONIA in Arabidopsis thaliana. The Plant Cell. PMID 35435236 DOI: 10.1093/plcell/koac111  0.749
2022 Clark NM, Elmore JM, Walley JW. To the proteome and beyond: advances in single-cell omics profiling for plant systems. Plant Physiology. 188: 726-737. PMID 35235661 DOI: 10.1093/plphys/kiab429  0.667
2021 Clark NM, Nolan TM, Wang P, Song G, Montes C, Valentine CT, Guo H, Sozzani R, Yin Y, Walley JW. Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. Nature Communications. 12: 5858. PMID 34615886 DOI: 10.1038/s41467-021-26165-3  0.785
2021 Wang P, Nolan TM, Clark NM, Jiang H, Montes-Serey C, Guo H, Bassham DC, Walley JW, Yin Y. The F-box E3 ubiquitin ligase BAF1 mediates the degradation of the brassinosteroid-activated transcription factor BES1 through selective autophagy in Arabidopsis. The Plant Cell. PMID 34436598 DOI: 10.1093/plcell/koab210  0.701
2021 Xiang L, Nolan TM, Bao Y, Elmore M, Tuel T, Gai J, Shah D, Wang P, Huser NM, Hurd AM, McLaughlin SA, Howell SH, Walley JW, Yin Y, Tang L. Robotic Assay for Drought (RoAD): An Automated Phenotyping System for Brassinosteroid and Drought Response. The Plant Journal : For Cell and Molecular Biology. PMID 34216161 DOI: 10.1111/tpj.15401  0.343
2021 Dash L, McEwan RE, Montes C, Mejia L, Walley JW, Dilkes BP, Kelley DR. is a novel allele of present in the T-DNA line SALK_015201. Plant Direct. 5: e00326. PMID 34136747 DOI: 10.1002/pld3.326  0.366
2021 Elmore JM, Griffin BD, Walley JW. Advances in functional proteomics to study plant-pathogen interactions. Current Opinion in Plant Biology. 63: 102061. PMID 34102449 DOI: 10.1016/j.pbi.2021.102061  0.407
2020 Reem NT, Chambers L, Zhang N, Abdullah SF, Chen Y, Feng G, Gao S, Soto-Burgos J, Pogorelko G, Bassham DC, Anderson CT, Walley JW, Zabotina OA. Post-Synthetic Reduction of Pectin Methylesterification Causes Morphological Abnormalities and Alterations to Stress Response in . Plants (Basel, Switzerland). 9. PMID 33198397 DOI: 10.3390/plants9111558  0.409
2020 Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, et al. Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. PMID 32694625 DOI: 10.1038/S41477-020-0743-Y  0.69
2020 Song G, Montes C, Walley JW. Quantitative Profiling of Protein Abundance and Phosphorylation State in Plant Tissues Using Tandem Mass Tags. Methods in Molecular Biology (Clifton, N.J.). 2139: 147-156. PMID 32462584 DOI: 10.1007/978-1-0716-0528-8_11  0.406
2020 Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, et al. Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. 6: 290-302. PMID 32170290 DOI: 10.1038/S41477-020-0605-7  0.788
2019 Pu Y, Walley JW, Shen Z, Lang MG, Briggs SP, Estelle M, Kelley DR. Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance. Molecular & Cellular Proteomics : McP. 18: 1157-1170. PMID 33531127 DOI: 10.1074/mcp.RA119.001378  0.678
2019 Jia H, Song G, Werth EG, Walley JW, Hicks LM, Jones AM. Receptor-Like Kinase Phosphorylation of Arabidopsis Heterotrimeric G-Protein Gα -Subunit AtGPA1. Proteomics. e1900265. PMID 31693794 DOI: 10.1002/Pmic.201900265  0.338
2019 Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings. Proteomics. e1900199. PMID 31381813 DOI: 10.1002/Pmic.201900199  0.8
2019 Jiang H, Tang B, Xie Z, Nolan T, Ye H, Song GY, Walley J, Yin Y. GSK3-Like Kinase BIN2 Phosphorylates RD26 to Potentiate Drought Signaling in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 31357236 DOI: 10.1111/Tpj.14484  0.53
2019 Zhang Y, Song G, Lal NK, Nagalakshmi U, Li Y, Zheng W, Huang PJ, Branon TC, Ting AY, Walley JW, Dinesh-Kumar SP. TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity. Nature Communications. 10: 3252. PMID 31324801 DOI: 10.1038/S41467-019-11202-Z  0.391
2019 Wu HL, Song G, Walley JW, Hsu PY. The tomato translational landscape revealed by transcriptome assembly and ribosome profiling. Plant Physiology. PMID 31248964 DOI: 10.1104/Pp.19.00541  0.442
2019 Zhang J, Wu S, Boehlein SK, McCarty DR, Song G, Walley JW, Myers A, Settles AM. Maize is a bacterial TamB homologue required for chloroplast envelope biogenesis. The Journal of Cell Biology. PMID 31235479 DOI: 10.1083/Jcb.201807166  0.341
2019 Abdulghani M, Song G, Kaur H, Walley JW, Tuteja G. Comparative Analysis of the Transcriptome and Proteome during Mouse Placental Development. Journal of Proteome Research. PMID 30986076 DOI: 10.1021/Acs.Jproteome.8B00970  0.402
2019 Pu Y, Walley JW, Shen Z, Lang M, Briggs SP, Estelle M, Kelley D. Quantitative early auxin root proteomics identifies GAUT10, a galacturonosyltransferase, as a novel regulator of root meristem maintenance. Molecular & Cellular Proteomics : McP. PMID 30918009 DOI: 10.1074/Mcp.Ra119.001378  0.704
2019 Clark NM, Shen Z, Briggs SP, Walley JW, Kelley DR. Front Cover: Auxin Induces Widespread Proteome Remodeling in Arabidopsis Seedlings Proteomics. 19: 1970151. DOI: 10.1002/Pmic.201970151  0.757
2018 Song G, Brachova L, Nikolau BJ, Jones AM, Walley JW. Heterotrimeric G-protein-dependent proteome and phosphoproteome in unstimulated Arabidopsis roots. Proteomics. e1800323. PMID 30407730 DOI: 10.1002/Pmic.201800323  0.394
2018 Guo H, Nolan TM, Song G, Liu S, Xie Z, Chen J, Schnable PS, Walley JW, Yin Y. FERONIA Receptor Kinase Contributes to Plant Immunity by Suppressing Jasmonic Acid Signaling in Arabidopsis thaliana. Current Biology : Cb. PMID 30270181 DOI: 10.1016/J.Cub.2018.07.078  0.463
2018 Song G, Hsu PY, Walley JW. Assessment and refinement of sample preparation methods for deep and quantitative plant proteome profiling. Proteomics. e1800220. PMID 30035338 DOI: 10.1002/Pmic.201800220  0.374
2018 Lal NK, Nagalakshmi U, Hurlburt NK, Flores R, Bak A, Sone P, Ma X, Song G, Walley J, Shan L, He P, Casteel C, Fisher AJ, Dinesh-Kumar SP. The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity. Cell Host & Microbe. 23: 485-497.e5. PMID 29649442 DOI: 10.1016/J.Chom.2018.03.010  0.427
2017 Walley JW, Shen Z, McReynolds MR, Schmelz EA, Briggs SP. Fungal-induced protein hyperacetylation in maize identified by acetylome profiling. Proceedings of the National Academy of Sciences of the United States of America. PMID 29259121 DOI: 10.1073/Pnas.1717519115  0.685
2017 Song G, McReynolds MR, Walley JW. Sample Preparation Protocols for Protein Abundance, Acetylome, and Phosphoproteome Profiling of Plant Tissues. Methods in Molecular Biology (Clifton, N.J.). 1610: 123-133. PMID 28439861 DOI: 10.1007/978-1-4939-7003-2_9  0.314
2017 Nolan TM, Brennan B, Yang M, Chen J, Zhang M, Li Z, Wang X, Bassham DC, Walley J, Yin Y. Selective Autophagy of BES1 Mediated by DSK2 Balances Plant Growth and Survival. Developmental Cell. 41: 33-46.e7. PMID 28399398 DOI: 10.1016/J.Devcel.2017.03.013  0.55
2016 Walley JW, Sartor RC, Shen Z, Schmitz RJ, Wu KJ, Urich MA, Nery JR, Smith LG, Schnable JC, Ecker JR, Briggs SP. Integration of omic networks in a developmental atlas of maize. Science (New York, N.Y.). 353: 814-8. PMID 27540173 DOI: 10.1126/Science.Aag1125  0.623
2016 Song G, Walley JW. Dynamic Protein Acetylation in Plant-Pathogen Interactions. Frontiers in Plant Science. 7: 421. PMID 27066055 DOI: 10.3389/Fpls.2016.00421  0.452
2015 Walley JW, Briggs SP. Dual use of peptide mass spectra: Protein atlas and genome annotation. Current Plant Biology. 2: 21-24. PMID 26811807 DOI: 10.1016/J.Cpb.2015.02.001  0.602
2015 Walley J, Xiao Y, Wang JZ, Baidoo EE, Keasling JD, Shen Z, Briggs SP, Dehesh K. Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum. Proceedings of the National Academy of Sciences of the United States of America. 112: 6212-7. PMID 25922532 DOI: 10.1073/Pnas.1504828112  0.788
2015 Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F. A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiology. 168: 233-46. PMID 25780097 DOI: 10.1104/Pp.15.00138  0.636
2014 Castellana NE, Shen Z, He Y, Walley JW, Cassidy CJ, Briggs SP, Bafna V. An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays. Molecular & Cellular Proteomics : McP. 13: 157-67. PMID 24142994 DOI: 10.1074/Mcp.M113.031260  0.583
2013 Walley JW, Shen Z, Sartor R, Wu KJ, Osborn J, Smith LG, Briggs SP. Reconstruction of protein networks from an atlas of maize seed proteotypes. Proceedings of the National Academy of Sciences of the United States of America. 110: E4808-17. PMID 24248366 DOI: 10.1073/Pnas.1319113110  0.654
2013 Walley JW, Kliebenstein DJ, Bostock RM, Dehesh K. Fatty acids and early detection of pathogens. Current Opinion in Plant Biology. 16: 520-6. PMID 23845737 DOI: 10.1016/J.Pbi.2013.06.011  0.681
2010 Savchenko T, Walley JW, Chehab EW, Xiao Y, Kaspi R, Pye MF, Mohamed ME, Lazarus CM, Bostock RM, Dehesh K. Arachidonic acid: an evolutionarily conserved signaling molecule modulates plant stress signaling networks. The Plant Cell. 22: 3193-205. PMID 20935246 DOI: 10.1105/Tpc.110.073858  0.798
2010 Walley JW, Kelley DR, Savchenko T, Dehesh K. Investigating the function of CAF1 deadenylases during plant stress responses. Plant Signaling & Behavior. 5: 802-5. PMID 20421740 DOI: 10.4161/Psb.5.7.11578  0.678
2010 Rowe HC, Walley JW, Corwin J, Chan EK, Dehesh K, Kliebenstein DJ. Deficiencies in jasmonate-mediated plant defense reveal quantitative variation in Botrytis cinerea pathogenesis. Plos Pathogens. 6: e1000861. PMID 20419157 DOI: 10.1371/Journal.Ppat.1000861  0.697
2010 Walley JW, Dehesh K. Molecular mechanisms regulating rapid stress signaling networks in Arabidopsis. Journal of Integrative Plant Biology. 52: 354-9. PMID 20377697 DOI: 10.1111/J.1744-7909.2010.00940.X  0.731
2010 Walley JW, Kelley DR, Nestorova G, Hirschberg DL, Dehesh K. Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses. Plant Physiology. 152: 866-75. PMID 19955262 DOI: 10.1104/Pp.109.149005  0.714
2010 Walley JW, Huerta AJ. EXPOSURE TO ENVIRONMENTALLY RELEVANT LEVELS OF CADMIUM PRIMARILY IMPACTS TRANSPIRATION IN FIELD-GROWN SOYBEAN Journal of Plant Nutrition. 33: 1519-1530. DOI: 10.1080/01904167.2010.489988  0.346
2008 Walley JW, Rowe HC, Xiao Y, Chehab EW, Kliebenstein DJ, Wagner D, Dehesh K. The chromatin remodeler SPLAYED regulates specific stress signaling pathways. Plos Pathogens. 4: e1000237. PMID 19079584 DOI: 10.1371/Journal.Ppat.1000237  0.688
2007 Walley JW, Coughlan S, Hudson ME, Covington MF, Kaspi R, Banu G, Harmer SL, Dehesh K. Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. Plos Genetics. 3: 1800-12. PMID 17953483 DOI: 10.1371/Journal.Pgen.0030172  0.788
2006 Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K. Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis. Plant Physiology. 141: 121-34. PMID 16531481 DOI: 10.1104/Pp.106.078592  0.676
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