Daniel Newkirk, Ph.D. - Publications

Affiliations: 
2014 Biomedical Sciences University of California, Irvine, Irvine, CA 
Area:
Biochemistry, Bioinformatics Biology

6 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Newkirk DA, Chen YY, Chien R, Zeng W, Biesinger J, Flowers E, Kawauchi S, Santos R, Calof AL, Lander AD, Xie X, Yokomori K. The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome. Clinical Epigenetics. 9: 89. PMID 28855971 DOI: 10.1186/S13148-017-0391-X  0.689
2014 Zeng W, Chen YY, Newkirk DA, Wu B, Balog J, Kong X, Ball AR, Zanotti S, Tawil R, Hashimoto N, Mortazavi A, van der Maarel SM, Yokomori K. Genetic and epigenetic characteristics of FSHD-associated 4q and 10q D4Z4 that are distinct from non-4q/10q D4Z4 homologs. Human Mutation. 35: 998-1010. PMID 24838473 DOI: 10.1002/Humu.22593  0.659
2011 Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. AREM: aligning short reads from ChIP-sequencing by expectation maximization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1495-505. PMID 22035330 DOI: 10.1089/Cmb.2011.0185  0.589
2011 Kong X, Stephens J, Ball AR, Heale JT, Newkirk DA, Berns MW, Yokomori K. Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1. Plos One. 6: e23548. PMID 21858164 DOI: 10.1371/Journal.Pone.0023548  0.579
2011 Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR, Calof AL, Lander AD, Groudine MT, Yokomori K. Cohesin mediates chromatin interactions that regulate mammalian β-globin expression. The Journal of Biological Chemistry. 286: 17870-8. PMID 21454523 DOI: 10.1074/Jbc.M110.207365  0.543
2007 Nishimoto KP, Newkirk D, Hou S, Fruehauf J, Nelson EL. Fluorescence activated cell sorting (FACS) using RNAlater to minimize RNA degradation and perturbation of mRNA expression from cells involved in initial host microbe interactions. Journal of Microbiological Methods. 70: 205-8. PMID 17512621 DOI: 10.1016/J.Mimet.2007.03.022  0.355
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