B. Ogan Mancarci - Related publications

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Brain cell types, gene expression
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Galfrè SG, Morandin F, Pietrosanto M, Cremisi F, Helmer-Citterich M. COTAN: scRNA-seq data analysis based on gene co-expression. Nar Genomics and Bioinformatics. 3: lqab072. PMID 34396096 DOI: 10.1093/nargab/lqab072   
2021 Xie CD, Wang B, Shen ZJ, Yao WY, Ao H, Li B, Pei Y, Zhou R. Validation of the Reference Genes for the Gene Expression Studies in Different Cell Lines of Pig. Biomed Research International. 2021: 5364190. PMID 34458368 DOI: 10.1155/2021/5364190   
2021 Park YP, Kellis M. CoCoA-diff: counterfactual inference for single-cell gene expression analysis. Genome Biology. 22: 228. PMID 34404460 DOI: 10.1186/s13059-021-02438-4   
2021 Winckers LA, Evelo CT, Willighagen EL, Kutmon M. Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts. International Journal of Molecular Sciences. 22. PMID 34502343 DOI: 10.3390/ijms22179432   
2021 Yang GH, Fontaine DA, Lodh S, Blumer JT, Roopra A, Davis DB. TCF19 Impacts a Network of Inflammatory and DNA Damage Response Genes in the Pancreatic β-Cell. Metabolites. 11. PMID 34436454 DOI: 10.3390/metabo11080513   
2021 Ramos ML, Park D, Lim J, Park J, Tran K, Garcia EJ, Green E. Adaptive local false discovery rate procedures for highly spiky data and their application RNA sequencing data of yeast SET4 deletion mutants. Biometrical Journal. Biometrische Zeitschrift. PMID 34320248 DOI: 10.1002/bimj.202000256   
2021 Ramos ML, Park D, Lim J, Park J, Tran K, Garcia EJ, Green E. Adaptive local false discovery rate procedures for highly spiky data and their application RNA sequencing data of yeast SET4 deletion mutants. Biometrical Journal. Biometrische Zeitschrift. PMID 34320248 DOI: 10.1002/bimj.202000256   
2021 Liang Y, Wang M, Liu Y, Wang C, Takahashi K, Naruse K. Meta-Analysis-Assisted Detection of Gravity-Sensitive Genes in Human Vascular Endothelial Cells. Frontiers in Cell and Developmental Biology. 9: 689662. PMID 34422812 DOI: 10.3389/fcell.2021.689662   
2021 Hobert O. Homeobox genes and the specification of neuronal identity. Nature Reviews. Neuroscience. PMID 34446866 DOI: 10.1038/s41583-021-00497-x   
2021 Jiang P, Ren L, Zhi L, Hu X, Xiao RP. Protocol for cell preparation and gene delivery in HEK293T and C2C12 cells. Star Protocols. 2: 100497. PMID 34337441 DOI: 10.1016/j.xpro.2021.100497   
2021 Metasuk A, Kitiyanant N, Chetsawang B. An expression system of channelrhodopsin-2 driven by a minimal Arc/Arg3.1 promoter and Tet system was developed in human neuroblastoma cells. Plasmid. 117: 102597. PMID 34411655 DOI: 10.1016/j.plasmid.2021.102597   
2021 Sheng J, Li WV. Selecting gene features for unsupervised analysis of single-cell gene expression data. Briefings in Bioinformatics. PMID 34351383 DOI: 10.1093/bib/bbab295   
2021 Harikumar H, Quinn TP, Rana S, Gupta S, Venkatesh S. Personalized single-cell networks: a framework to predict the response of any gene to any drug for any patient. Biodata Mining. 14: 37. PMID 34353329 DOI: 10.1186/s13040-021-00263-w   
2021 Yang Y, Paul A, Bach TN, Huang ZJ, Zhang MQ. Single-cell alternative polyadenylation analysis delineates GABAergic neuron types. Bmc Biology. 19: 144. PMID 34301239 DOI: 10.1186/s12915-021-01076-3   
2021 Wang B, Gong S, Shao W, Han L, Li Z, Zhang Z, Zheng Y, Ouyang F, Ma Y, Xu W, Feng Y. Comprehensive analysis of pivotal biomarkers, immune cell infiltration and therapeutic drugs for steroid-induced osteonecrosis of the femoral head. Bioengineered. 12: 5971-5984. PMID 34488536 DOI: 10.1080/21655979.2021.1972081   
2021 Ubina T, Vahedi-Hunter T, Agnew-Svoboda W, Wong W, Gupta A, Santhakumar V, Riccomagno MM. ExBoX: a simple Boolean exclusion strategy to drive expression in neurons. Journal of Cell Science. PMID 34515305 DOI: 10.1242/jcs.257212   
2021 Gandhi S, Li Y, Tang W, Christensen JB, Urrutia HA, Vieceli FM, Piacentino ML, Bronner ME. A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos. Development (Cambridge, England). 148. PMID 34437692 DOI: 10.1242/dev.193565   
2021 Yang J, Li Q, Du W, Yao Y, Shen G, Jiang W, Pang Y. Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in . Plants (Basel, Switzerland). 10. PMID 34451684 DOI: 10.3390/plants10081639   
2021 Graßhoff H, Müller-Fielitz H, Dogbevia GK, Körbelin J, Bannach J, Vahldieck CM, Kusche-Vihrog K, Jöhren O, Müller OJ, Nogueiras R, Prevot V, Schwaninger M. Short regulatory DNA sequences to target brain endothelial cells for gene therapy. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 271678X211039617. PMID 34427142 DOI: 10.1177/0271678X211039617   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Xie S, Zeng Q, Ouyang S, Liang Y, Xiao C. Bioinformatics analysis of epigenetic and SNP-related molecular markers in systemic lupus erythematosus. American Journal of Translational Research. 13: 6312-6329. PMID 34306371   
2021 Chen J, Cheong C, Lan L, Zhou X, Liu J, Lyu A, Cheung WK, Zhang L. DeepDRIM: a deep neural network to reconstruct cell-type-specific gene regulatory network using single-cell RNA-seq data. Briefings in Bioinformatics. PMID 34424948 DOI: 10.1093/bib/bbab325   
2021 Das S, Rai SN. Statistical Approach of Gene Set Analysis with Quantitative Trait Loci for Crop Gene Expression Studies. Entropy (Basel, Switzerland). 23. PMID 34441085 DOI: 10.3390/e23080945   
2021 Pan X, Liu JH. Identification of four key biomarkers and small molecule drugs in nasopharyngeal carcinoma by weighted gene co-expression network analysis. Bioengineered. 12: 3647-3661. PMID 34261404 DOI: 10.1080/21655979.2021.1949844   
2021 Shi Q, Tang B, Li Y, Li Y, Lin T, He D, Wei G. Identification of CDC20 as a Novel Biomarker in Diagnosis and Treatment of Wilms Tumor. Frontiers in Pediatrics. 9: 663054. PMID 34513754 DOI: 10.3389/fped.2021.663054   
2021 Zhang X, Liu G, Zhang N, Hua K. A time-resolved transcriptome landscape of the developing mouse ovary. Biochemical and Biophysical Research Communications. 572: 57-64. PMID 34343835 DOI: 10.1016/j.bbrc.2021.07.083   
2021 Zinani OQH, Keseroğlu K, Özbudak EM. Regulatory mechanisms ensuring coordinated expression of functionally related genes. Trends in Genetics : Tig. PMID 34376301 DOI: 10.1016/j.tig.2021.07.008   
2021 Abraham AA, Tisdale JF. Gene Therapy for Sickle Cell Disease - Moving from the Bench to the Bedside. Blood. PMID 34232993 DOI: 10.1182/blood.2019003776   
2021 Abraham AA, Tisdale JF. Gene Therapy for Sickle Cell Disease - Moving from the Bench to the Bedside. Blood. PMID 34232993 DOI: 10.1182/blood.2019003776   
2021 Farr EB, Sattler JM, Frischknecht F. SPOT: a web-tool enabling swift profiling of transcriptomes. Bioinformatics (Oxford, England). PMID 34289024 DOI: 10.1093/bioinformatics/btab541   
2021 Goszczynski DE, Tinetti PS, Choi YH, Hinrichs K, Ross PJ. Genome activation in equine in vitro-produced embryos. Biology of Reproduction. PMID 34515744 DOI: 10.1093/biolre/ioab173   
2021 Chun KH. Discovery of Cellular RhoA Functions by the Integrated Application of Gene Set Enrichment Analysis. Biomolecules & Therapeutics. PMID 34429388 DOI: 10.4062/biomolther.2021.075   
2021 Marion-Poll L, Forêt B, Zielinski D, Massip F, Attia M, Carter AC, Syx L, Chang HY, Gendrel AV, Heard E. Locus specific epigenetic modalities of random allelic expression imbalance. Nature Communications. 12: 5330. PMID 34504093 DOI: 10.1038/s41467-021-25630-3   
2021 Allen AM, B Sokolowski M. Expression of the gene in adult . Journal of Neurogenetics. 1-21. PMID 34382904 DOI: 10.1080/01677063.2021.1941946   
2021 Shen H, Guo YL, Li GH, Zhao W, Zhang L. Gene Expression Analysis Reveals Key Genes and Signalings Associated with the Prognosis of Prostate Cancer. Computational and Mathematical Methods in Medicine. 2021: 9946015. PMID 34497666 DOI: 10.1155/2021/9946015   
2021 Radapong S, Chan K, Sarker SD, Ritchie KJ. Oxyresveratrol Modulates Genes Associated with Apoptosis, Cell Cycle Control and DNA Repair in MCF-7 Cells. Frontiers in Pharmacology. 12: 694562. PMID 34305605 DOI: 10.3389/fphar.2021.694562   
2021 Radapong S, Chan K, Sarker SD, Ritchie KJ. Oxyresveratrol Modulates Genes Associated with Apoptosis, Cell Cycle Control and DNA Repair in MCF-7 Cells. Frontiers in Pharmacology. 12: 694562. PMID 34305605 DOI: 10.3389/fphar.2021.694562   
2021 Wichert N, Witt M, Blume C, Scheper T. Clinical applicability of optogenetic gene regulation. Biotechnology and Bioengineering. PMID 34287844 DOI: 10.1002/bit.27895   
2021 Das Roy R, Hallikas O, Christensen MM, Renvoisé E, Jernvall J. Chromosomal neighbourhoods allow identification of organ specific changes in gene expression. Plos Computational Biology. 17: e1008947. PMID 34506480 DOI: 10.1371/journal.pcbi.1008947   
2021 Li T, Wang T, Zhao X. Profiles of immune infiltration in abdominal aortic aneurysm and their associated marker genes: a gene expression-based study. Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Medicas E Biologicas. 54: e11372. PMID 34495251 DOI: 10.1590/1414-431X2021e11372   
2021 Satoh N, Tominaga H, Kiyomoto M, Hisata K, Inoue J, Nishitsuji K. A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express in the Amphioxus, . Frontiers in Cell and Developmental Biology. 9: 696875. PMID 34336847 DOI: 10.3389/fcell.2021.696875   
2021 Wang JH, Shi CW, Lu YY, Zeng Y, Cheng MY, Wang RY, Sun Y, Jiang YL, Yang WT, Zhao DD, Huang HB, Ye LP, Cao X, Yang GL, Wang CF. MicroRNA and circRNA Expression Analysis in a Zbtb1 Gene Knockout Monoclonal EL4 Cell Line. Frontiers in Cellular and Infection Microbiology. 11: 706919. PMID 34290994 DOI: 10.3389/fcimb.2021.706919   
2021 Wang JH, Shi CW, Lu YY, Zeng Y, Cheng MY, Wang RY, Sun Y, Jiang YL, Yang WT, Zhao DD, Huang HB, Ye LP, Cao X, Yang GL, Wang CF. MicroRNA and circRNA Expression Analysis in a Zbtb1 Gene Knockout Monoclonal EL4 Cell Line. Frontiers in Cellular and Infection Microbiology. 11: 706919. PMID 34290994 DOI: 10.3389/fcimb.2021.706919   
2021 Zhu W, Xu J, Chen Z, Jiang J. Analyzing Roles of NUSAP1 From Clinical, Molecular Mechanism and Immune Perspectives in Hepatocellular Carcinoma. Frontiers in Genetics. 12: 689159. PMID 34354737 DOI: 10.3389/fgene.2021.689159   
2021 Richter ML, Deligiannis IK, Yin K, Danese A, Lleshi E, Coupland P, Vallejos CA, Matchett KP, Henderson NC, Colome-Tatche M, Martinez-Jimenez CP. Single-nucleus RNA-seq2 reveals functional crosstalk between liver zonation and ploidy. Nature Communications. 12: 4264. PMID 34253736 DOI: 10.1038/s41467-021-24543-5   
2021 Moriel N, Senel E, Friedman N, Rajewsky N, Karaiskos N, Nitzan M. NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport. Nature Protocols. PMID 34349282 DOI: 10.1038/s41596-021-00573-7   
2021 Zogopoulos VL, Saxami G, Malatras A, Angelopoulou A, Jen CH, Duddy WJ, Daras G, Hatzopoulos P, Westhead DR, Michalopoulos I. Coexpression Tool: a tool for gene coexpression analysis in . Iscience. 24: 102848. PMID 34381973 DOI: 10.1016/j.isci.2021.102848   
2021 Sun J, Xie Y, Wang Q, Shen J, Qin W, Zhang N, Yu C. Genes associated with grey matter volume reduction in multiple sclerosis. Journal of Neurology. PMID 34455470 DOI: 10.1007/s00415-021-10777-2   
2021 Guo H, Yang J, Liu S, Qin T, Zhao Q, Hou X, Ren L. Prognostic marker identification based on weighted gene co-expression network analysis and associated confirmation in gastric cancer. Bioengineered. 12: 4666-4680. PMID 34338150 DOI: 10.1080/21655979.2021.1957645   
2021 Trevino AE, Müller F, Andersen J, Sundaram L, Kathiria A, Shcherbina A, Farh K, Chang HY, Pașca AM, Kundaje A, Pașca SP, Greenleaf WJ. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution. Cell. PMID 34390642 DOI: 10.1016/j.cell.2021.07.039