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William R. Schief - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
 Immunology and Microbiology Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Area:
Biochemistry, Immunology
Website:
https://www.scripps.edu/faculty/schief/
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Le KH, Adolf-Bryfogle J, Klima JC, Lyskov S, Labonte J, Bertolani S, Burman SSR, Leaver-Fay A, Weitzner B, Maguire J, Rangan R, Adrianowycz MA, Alford RF, Adal A, Nance ML, ... ... Schief W, et al. PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design. Biophysicist (Rockville, Md.). 2: 108-122. PMID 35128343 DOI: 10.35459/tbp.2019.000147  0.736
2021 Koehler Leman J, Lyskov S, Lewis SM, Adolf-Bryfogle J, Alford RF, Barlow K, Ben-Aharon Z, Farrell D, Fell J, Hansen WA, Harmalkar A, Jeliazkov J, Kuenze G, Krys JD, Ljubetič A, ... ... Schief W, et al. Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks. Nature Communications. 12: 6947. PMID 34845212 DOI: 10.1038/s41467-021-27222-7  0.695
2021 Schoeder CT, Schmitz S, Adolf-Bryfogle J, Sevy AM, Finn JA, Sauer MF, Bozhanova NG, Mueller BK, Sangha AK, Bonet J, Sheehan JH, Kuenze G, Marlow B, Smith ST, Woods H, ... ... Schief WR, et al. Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design. Biochemistry. PMID 33705117 DOI: 10.1021/acs.biochem.0c00912  0.687
2021 Le KH, Adolf-Bryfogle J, Klima JC, Lyskov S, Labonte JW, Bertolani S, Burman SSR, Leaver-Fay A, Weitzner BD, Maguire J, Rangan R, Adrianowycz MA, Alford RF, Adal A, Nance ML, ... ... Schief W, et al. PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design The Biophysicist. 2: 108-122. DOI: 10.35459/TBP.2019.000147  0.688
2020 Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. CoV3D: a database of high resolution coronavirus protein structures. Nucleic Acids Research. PMID 32890396 DOI: 10.1093/Nar/Gkaa731  0.697
2020 Gowthaman R, Guest JD, Yin R, Adolf-Bryfogle J, Schief WR, Pierce BG. CoV3D: A database of high resolution coronavirus protein structures. Biorxiv : the Preprint Server For Biology. PMID 32577656 DOI: 10.1101/2020.05.12.091983  0.683
2020 Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, ... ... Schief W, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2  0.735
2020 Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, et al. Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507. PMID 32365137 DOI: 10.1371/Journal.Pcbi.1007507  0.732
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Members of the RosettaCommons Consortium. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S009  0.685
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Details of Remaining Collective Challenges. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S008  0.705
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Commercial spin-off companies from the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S007  0.694
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S005  0.676
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Descriptions of the Rosetta board positions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S004  0.687
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Typical development workflow in the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S003  0.711
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Specific tests for Rosetta running on our automated testing framework. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S002  0.693
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, et al. Growth in Rosetta PIs and conference attendees. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S001  0.68
2018 Frenz B, Rämisch S, Borst AJ, Walls AC, Adolf-Bryfogle J, Schief WR, Veesler D, DiMaio F. Automatically Fixing Errors in Glycoprotein Structures with Rosetta. Structure (London, England : 1993). PMID 30344107 DOI: 10.1016/J.Str.2018.09.006  0.667
2018 Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL. RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. Plos Computational Biology. 14: e1006112. PMID 29702641 DOI: 10.1371/Journal.Pcbi.1006112  0.729
2016 Labonte JW, Adolf-Bryfogle J, Schief WR, Gray JJ. Residue-centric modeling and design of saccharide and glycoconjugate structures. Journal of Computational Chemistry. PMID 27900782 DOI: 10.1002/Jcc.24679  0.694
2014 Correia BE, Bates JT, Loomis RJ, Baneyx G, Carrico C, Jardine JG, Rupert P, Correnti C, Kalyuzhniy O, Vittal V, Connell MJ, Stevens E, Schroeter A, Chen M, Macpherson S, ... ... Schief WR, et al. Proof of principle for epitope-focused vaccine design. Nature. 507: 201-6. PMID 24499818 DOI: 10.1038/Nature12966  0.741
2003 Schief WR, Antia M, Discher BM, Hall SB, Vogel V. Liquid-crystalline collapse of pulmonary surfactant monolayers Biophysical Journal. 84: 3792-3806. PMID 12770885 DOI: 10.1016/S0006-3495(03)75107-8  0.408
2001 Piknova B, Schief WR, Vogel V, Discher BM, Hall SB. Discrepancy between phase behavior of lung surfactant phospholipids and the classical model of surfactant function Biophysical Journal. 81: 2172-2180. PMID 11566788 DOI: 10.1016/S0006-3495(01)75865-1  0.419
2000 Schief WR, Touryan L, Hall aSB, Vogel V. Nanoscale topographic instabilities of a phospholipid monolayer Journal of Physical Chemistry B. 104: 7388-7393. DOI: 10.1021/Jp993770+  0.393
2000 Schief WR, Dennis SR, Frey W, Vogel V. Light scattering microscopy from monolayers and nanoparticles at the air/water interface Colloids and Surfaces a: Physicochemical and Engineering Aspects. 171: 75-86. DOI: 10.1016/S0927-7757(99)00562-2  0.415
1999 Schief WR, Edwards T, Frey W, Koppenol S, Stayton PS, Vogel V. Two-dimensional crystallization of streptavidin: In pursuit of the molecular origins of structure, morphology, and thermodynamics Biomolecular Engineering. 16: 29-38. PMID 10796982 DOI: 10.1016/S1389-0344(99)00056-8  0.444
1999 Discher BM, Schief WR, Vogel V, Hall SB. Phase separation in monolayers of pulmonary surfactant phospholipids at the air-water interface: Composition and structure Biophysical Journal. 77: 2051-2061. PMID 10512825 DOI: 10.1016/S0006-3495(99)77046-3  0.403
1999 Maloney KM, Schief WR, Pack DW, Frey W, Arnold FH, Vogel V. Binding and two-dimensional crystallization of streptavidin at the air/water interface via engineered Cu-IDA chelator lipids Coordination Chemistry Reviews. 183: 3-18. DOI: 10.1016/S0010-8545(98)00174-X  0.435
1999 Maloney KM, Schief WR, Pack DW, Frey W, Arnold FH, Vogel V. Binding and two-dimensional crystallization of streptavidin at the air/water interface via engineered Cu-IDA chelator lipids Coordination Chemistry Reviews. 183: 3-18.  0.434
1998 Frey W, Brink J, Schief WR, Chiu W, Vogel V. Electron crystallographic analysis of two-dimensional streptavidin crystals coordinated to metal-chelated lipid monolayers. Biophysical Journal. 74: 2674-9. PMID 9591691 DOI: 10.1016/S0006-3495(98)77973-1  0.43
1998 Edwards TC, Koppenol S, Frey W, Schief WR, Vogel V, Stenkamp RE, Stayton PS. Molecular basis for ionic strength dependence and crystal morphology in two-dimensional streptavidin crystallization Langmuir. 14: 4683-4687. DOI: 10.1021/La9801918  0.432
1997 Vogel V, Schief WR, Frey W. Dynamics of two-dimensional protein crystallization at the air/water interface: streptavidin targetted to surfaces via high-affinity binding or metal coordination Supramolecular Science. 4: 163-171. DOI: 10.1016/S0968-5677(96)00044-2  0.435
1996 Discher BM, Maloney KM, Schief WR, Grainger DW, Vogel V, Hall SB. Lateral phase separation in interfacial films of pulmonary surfactant Biophysical Journal. 71: 2583-2590. PMID 8913596 DOI: 10.1016/S0006-3495(96)79450-X  0.391
1996 Frey W, Schief WR, Pack DW, Chen CT, Chilkoti A, Stayton P, Vogel V, Arnold FH. Two-dimensional protein crystallization via metal-ion coordination by naturally occurring surface histidines Proceedings of the National Academy of Sciences of the United States of America. 93: 4937-4941. PMID 8643507 DOI: 10.1073/Pnas.93.10.4937  0.44
1996 Frey W, Schief WR, Vogel V. Two-dimensional crystallization of streptavidin studied by quantitative Brewster angle microscopy Langmuir. 12: 1312-1320. DOI: 10.1021/La9505374  0.402
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