Jonathan E. Rubin, Ph.D. - Publications

Affiliations: 
Mathematics University of Pittsburgh, Pittsburgh, PA, United States 

125 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Phillips RS, Koizumi H, Molkov YI, Rubin JE, Smith JC. Predictions and experimental tests of a new biophysical model of the mammalian respiratory oscillator. Elife. 11. PMID 35796425 DOI: 10.7554/eLife.74762  0.694
2022 Vich C, Clapp M, Rubin JE, Verstynen T. Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit. Plos Computational Biology. 18: e1010255. PMID 35737720 DOI: 10.1371/journal.pcbi.1010255  0.61
2022 Phillips RS, Rubin JE. Putting the theory into 'burstlet theory' with a biophysical model of burstlets and bursts in the respiratory preBötzinger complex. Elife. 11. PMID 35380537 DOI: 10.7554/eLife.75713  0.34
2021 Bond K, Dunovan K, Porter A, Rubin JE, Verstynen T. Dynamic decision policy reconfiguration under outcome uncertainty. Elife. 10. PMID 34951589 DOI: 10.7554/eLife.65540  0.546
2021 Abdulla MU, Phillips RS, Rubin JE. Dynamics of ramping bursts in a respiratory neuron model. Journal of Computational Neuroscience. PMID 34704174 DOI: 10.1007/s10827-021-00800-w  0.409
2020 Phillips RS, Rosner I, Gittis AH, Rubin JE. The effects of chloride dynamics on substantia nigra pars reticulata responses to pallidal and striatal inputs. Elife. 9. PMID 32894224 DOI: 10.7554/Elife.55592  0.433
2020 Whalen TC, Willard AM, Rubin JE, Gittis AH. Delta Oscillations Are a Robust Biomarker of Dopamine Depletion Severity and Motor Dysfunction in Awake Mice. Journal of Neurophysiology. PMID 32579421 DOI: 10.1152/Jn.00158.2020  0.35
2020 Wang Y, Rubin JE. Complex bursting dynamics in an embryonic respiratory neuron model. Chaos (Woodbury, N.Y.). 30: 043127. PMID 32357647 DOI: 10.1063/1.5138993  0.521
2020 Rubin JE, Vich C, Clapp M, Noneman K, Verstynen T. The credit assignment problem in cortico-basal ganglia-thalamic networks: a review, a problem, and a possible solution. The European Journal of Neuroscience. PMID 32302439 DOI: 10.1111/Ejn.14745  0.64
2020 Letson B, Rubin JE. Local orthogonal rectification: Deriving natural coordinates to study flows relative to manifolds Discrete and Continuous Dynamical Systems-Series B. 23: 0. DOI: 10.3934/Dcdsb.2020088  0.311
2020 Vich C, Dunovan K, Verstynen T, Rubin J. Corticostriatal synaptic weight evolution in a two-alternative forced choice task: a computational study Communications in Nonlinear Science and Numerical Simulation. 82: 105048. DOI: 10.1016/J.Cnsns.2019.105048  0.663
2019 Phillips RS, Rubin JE. Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics. Plos Computational Biology. 15: e1006938. PMID 31469828 DOI: 10.1371/Journal.Pcbi.1006938  0.428
2019 Rubin JE, Smith JC. Robustness of respiratory rhythm generation across dynamic regimes. Plos Computational Biology. 15: e1006860. PMID 31361738 DOI: 10.1371/Journal.Pcbi.1006860  0.45
2019 Dunovan K, Vich C, Clapp M, Verstynen T, Rubin J. Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making. Plos Computational Biology. 15: e1006998. PMID 31060045 DOI: 10.1371/Journal.Pcbi.1006998  0.63
2019 Wittman S, Abdala AP, Rubin JE. Reduced computational modeling of Kölliker-Fuse contributions to breathing patterns in Rett syndrome. The Journal of Physiology. PMID 30908648 DOI: 10.1113/Jp277592  0.403
2019 Young G, Demir M, Salman H, Ermentrout GB, Rubin JE. Interactions of solitary pulses of E. coli in a one-dimensional nutrient gradient Physica D: Nonlinear Phenomena. 395: 24-36. DOI: 10.1016/J.Physd.2019.02.007  0.555
2018 Ramirez-Zuniga I, Rubin JE, Swigon D, Clermont G. Mathematical Modeling of Energy Consumption in the Acute Inflammatory Response. Journal of Theoretical Biology. PMID 30149010 DOI: 10.1016/J.Jtbi.2018.08.033  0.309
2018 Kubota S, Rubin JE. Numerical optimization of coordinated reset stimulation for desynchronizing neuronal network dynamics. Journal of Computational Neuroscience. PMID 29882174 DOI: 10.1007/S10827-018-0690-Z  0.377
2018 Rubin JE, Krauskopf B, Osinga HM. Natural extension of fast-slow decomposition for dynamical systems. Physical Review. E. 97: 012215. PMID 29448375 DOI: 10.1103/Physreve.97.012215  0.359
2017 Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE. State-Dependent Rhythmogenesis and Frequency Control in a Half-Center Locomotor CPG. Journal of Neurophysiology. jn.00550.2017. PMID 28978767 DOI: 10.1152/Jn.00550.2017  0.658
2017 Rubin JE. Computational models of basal ganglia dysfunction: the dynamics is in the details. Current Opinion in Neurobiology. 46: 127-135. PMID 28888856 DOI: 10.1016/J.Conb.2017.08.011  0.382
2017 Wang Y, Rubin JE. Timescales and Mechanisms of Sigh-Like Bursting and Spiking in Models of Rhythmic Respiratory Neurons. Journal of Mathematical Neuroscience. 7: 3. PMID 28589465 DOI: 10.1186/S13408-017-0045-5  0.517
2017 Rubin JE, Signerska-Rynkowska J, Touboul JD, Vidal A. Wild oscillations in a nonlinear neuron model with resets: (II) Mixed-mode oscillations Discrete and Continuous Dynamical Systems-Series B. 22: 4003-4039. DOI: 10.3934/Dcdsb.2017205  0.455
2017 Rubin JE, Signerska-Rynkowska J, Touboul JD, Vidal A. Wild oscillations in a nonlinear neuron model with resets: (I) Bursting, spike-adding and chaos Discrete and Continuous Dynamical Systems-Series B. 22: 3967-4002. DOI: 10.3934/Dcdsb.2017204  0.412
2017 Letson B, Rubin JE, Vo T. Analysis of Interacting Local Oscillation Mechanisms in Three-Timescale Systems Siam Journal On Applied Mathematics. 77: 1020-1046. DOI: 10.1137/16M1088429  0.363
2016 Molkov YI, Rubin JE, Rybak IA, Smith JC. Computational models of the neural control of breathing. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 28009109 DOI: 10.1002/Wsbm.1371  0.764
2016 Rosenbaum R, Smith MA, Kohn A, Rubin JE, Doiron B. The spatial structure of correlated neuronal variability. Nature Neuroscience. PMID 27798630 DOI: 10.1038/Nn.4433  0.361
2016 Wang Y, Rubin JE. Multiple timescale mixed bursting dynamics in a respiratory neuron model. Journal of Computational Neuroscience. PMID 27491968 DOI: 10.1007/S10827-016-0616-6  0.451
2016 Bertram R, Rubin JE. Multi-timescale Systems and Fast-Slow Analysis. Mathematical Biosciences. PMID 27424950 DOI: 10.1016/J.Mbs.2016.07.003  0.363
2016 Corbit VL, Whalen TC, Zitelli KT, Crilly SY, Rubin JE, Gittis AH. Pallidostriatal Projections Promote β Oscillations in a Dopamine-Depleted Biophysical Network Model. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 5556-71. PMID 27194335 DOI: 10.1523/Jneurosci.0339-16.2016  0.39
2016 Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA. Mixed-mode oscillations and population bursting in the pre-Bӧtzinger complex. Elife. 5. PMID 26974345 DOI: 10.7554/Elife.13403  0.704
2016 Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA. Author response: Mixed-mode oscillations and population bursting in the pre-Bötzinger complex Elife. DOI: 10.7554/Elife.13403.013  0.578
2016 Duanmu M, Whitaker N, Kevrekidis PG, Vainchtein A, Rubin JE. Traveling wave solutions in a chain of periodically forced coupled nonlinear oscillators Physica D: Nonlinear Phenomena. 325: 25-40. DOI: 10.1016/J.Physd.2016.02.001  0.328
2015 Snyder AC, Rubin JE. Conditions for Multi-functionality in a Rhythm Generating Network Inspired by Turtle Scratching. Journal of Mathematical Neuroscience. 5: 26. PMID 26185063 DOI: 10.1186/S13408-015-0026-5  0.463
2015 Wei W, Rubin JE, Wang XJ. Role of the indirect pathway of the basal ganglia in perceptual decision making. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 4052-64. PMID 25740532 DOI: 10.1523/Jneurosci.3611-14.2015  0.354
2015 Bose A, Rubin JE. Strategies to maximize burst lengths in rhythmic anti-phase activity of networks with reciprocal inhibition International Journal of Bifurcation and Chaos. 25. DOI: 10.1142/S0218127415400040  0.463
2015 Nan P, Wang Y, Kirk V, Rubin JE. Understanding and distinguishing three-time-scale oscillations: Case study in a coupled morris-lecar system Siam Journal On Applied Dynamical Systems. 14: 1518-1557. DOI: 10.1137/140985494  0.306
2015 Roberts KL, Rubin JE, Wechselberger M. Averaging, folded singularities, and torus canards: Explaining transitions between bursting and spiking in a coupled neuron model Siam Journal On Applied Dynamical Systems. 14: 1808-1844. DOI: 10.1137/140981770  0.399
2014 Molkov YI, Shevtsova NA, Park C, Ben-Tal A, Smith JC, Rubin JE, Rybak IA. A closed-loop model of the respiratory system: focus on hypercapnia and active expiration. Plos One. 9: e109894. PMID 25302708 DOI: 10.1371/Journal.Pone.0109894  0.75
2014 Rosenbaum R, Zimnik A, Zheng F, Turner RS, Alzheimer C, Doiron B, Rubin JE. Axonal and synaptic failure suppress the transfer of firing rate oscillations, synchrony and information during high frequency deep brain stimulation. Neurobiology of Disease. 62: 86-99. PMID 24051279 DOI: 10.1016/J.Nbd.2013.09.006  0.38
2014 Kubota S, Rubin JE. A model for low-frequency bursts in subthalamic nucleus neurons Journal of Robotics, Networking and Artificial Life. 1: 49-53. DOI: 10.2991/Jrnal.2014.1.1.10  0.463
2014 Burstein D, Rubin J. Measuring synchronous bursting and spiking under varying second order network connectivity statistics. Bmc Neuroscience. 15: 56. DOI: 10.1186/1471-2202-15-S1-P56  0.441
2014 Snyder A, Rubin J. Multiple rhythms from one network: phase plane and stochastic analyses of rhythmic activity in turtle motor circuits Bmc Neuroscience. 15: 55. DOI: 10.1186/1471-2202-15-S1-P55  0.434
2014 Wang Y, Nan P, Kirk V, Rubin J. Understanding and distinguishing three time scale oscillations Bmc Neuroscience. 15: 54. DOI: 10.1186/1471-2202-15-S1-P54  0.424
2014 Stanhope S, Rubin JE, Swigon D. Identifiability of linear and linear-in-parameters dynamical systems from a single trajectory Siam Journal On Applied Dynamical Systems. 13: 1792-1815. DOI: 10.1137/130937913  0.316
2013 Rubin JJ, Rubin JE, Ermentrout GB. Analysis of synchronization in a slowly changing environment: how slow coupling becomes fast weak coupling. Physical Review Letters. 110: 204101. PMID 25167415 DOI: 10.1103/Physrevlett.110.204101  0.62
2013 Jimenez ND, Mihalas S, Brown R, Niebur E, Rubin J. Locally Contractive Dynamics in Generalized Integrate-and-Fire Neurons. Siam Journal On Applied Dynamical Systems. 12: 1474-1514. PMID 24489486 DOI: 10.1137/120900435  0.41
2013 Terman D, Rubin JE, Diekman CO. Irregular activity arises as a natural consequence of synaptic inhibition. Chaos (Woodbury, N.Y.). 23: 046110. PMID 24387589 DOI: 10.1063/1.4831752  0.491
2013 Folias SE, Yu S, Snyder A, Nikolić D, Rubin JE. Synchronisation hubs in the visual cortex may arise from strong rhythmic inhibition during gamma oscillations. The European Journal of Neuroscience. 38: 2864-83. PMID 23837724 DOI: 10.1111/Ejn.12287  0.796
2013 Cleary DR, Raslan AM, Rubin JE, Bahgat D, Viswanathan A, Heinricher MM, Burchiel KJ. Deep brain stimulation entrains local neuronal firing in human globus pallidus internus. Journal of Neurophysiology. 109: 978-87. PMID 23197451 DOI: 10.1152/Jn.00420.2012  0.412
2013 Rosenbaum R, Rubin JE, Doiron B. Short-term synaptic depression and stochastic vesicle dynamics reduce and shape neuronal correlations. Journal of Neurophysiology. 109: 475-84. PMID 23114215 DOI: 10.1152/Jn.00733.2012  0.37
2013 Park C, Rubin JE. Cooperation of intrinsic bursting and calcium oscillations underlying activity patterns of model pre-Bötzinger complex neurons. Journal of Computational Neuroscience. 34: 345-66. PMID 23053862 DOI: 10.1007/S10827-012-0425-5  0.469
2012 Rubin JE, McIntyre CC, Turner RS, Wichmann T. Basal ganglia activity patterns in parkinsonism and computational modeling of their downstream effects. The European Journal of Neuroscience. 36: 2213-28. PMID 22805066 DOI: 10.1111/J.1460-9568.2012.08108.X  0.451
2012 Rubin JE, Terman D. Explicit maps to predict activation order in multiphase rhythms of a coupled cell network. Journal of Mathematical Neuroscience. 2: 4. PMID 22658080 DOI: 10.1186/2190-8567-2-4  0.399
2012 Snyder A, Rubin J. Can a central pattern generator produce multiple motor patterns? Modeling scratch rhythms in turtle Bmc Neuroscience. 13: 52. DOI: 10.1186/1471-2202-13-S1-P52  0.454
2012 Park C, Molkov Y, Ben-Tal A, Shevtsova N, Smith J, Rybak I, Rubin J. A closed model for the respiratory system in mammals Bmc Neuroscience. 13. DOI: 10.1186/1471-2202-13-S1-P51  0.798
2011 Wang J, Costello W, Rubin JE. Tailoring inputs to achieve maximal neuronal firing. Journal of Mathematical Neuroscience. 1: 3. PMID 22656323 DOI: 10.1186/2190-8567-1-3  0.425
2011 Reitsma P, Doiron B, Rubin J. Correlation transfer from basal ganglia to thalamus in Parkinson's disease. Frontiers in Computational Neuroscience. 5: 58. PMID 22355287 DOI: 10.3389/fncom.2011.00058  0.419
2011 Spardy LE, Markin SN, Shevtsova NA, Prilutsky BI, Rybak IA, Rubin JE. A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: II. Phase asymmetry. Journal of Neural Engineering. 8: 065004. PMID 22058275 DOI: 10.1088/1741-2560/8/6/065004  0.65
2011 Spardy LE, Markin SN, Shevtsova NA, Prilutsky BI, Rybak IA, Rubin JE. A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: I. Rhythm generation. Journal of Neural Engineering. 8: 065003. PMID 22058274 DOI: 10.1088/1741-2560/8/6/065003  0.632
2011 Hao ZZ, Spardy LE, Nguyen EB, Rubin JE, Berkowitz A. Strong interactions between spinal cord networks for locomotion and scratching. Journal of Neurophysiology. 106: 1766-81. PMID 21734103 DOI: 10.1152/Jn.00460.2011  0.423
2011 Kubota S, Rubin JE. NMDA-induced burst firing in a model subthalamic nucleus neuron. Journal of Neurophysiology. 106: 527-37. PMID 21562199 DOI: 10.1152/Jn.01127.2010  0.436
2011 Guo Y, Rubin JE. Multi-site stimulation of subthalamic nucleus diminishes thalamocortical relay errors in a biophysical network model. Neural Networks : the Official Journal of the International Neural Network Society. 24: 602-16. PMID 21458952 DOI: 10.1016/J.Neunet.2011.03.010  0.431
2011 Gaiteri C, Rubin JE. The interaction of intrinsic dynamics and network topology in determining network burst synchrony. Frontiers in Computational Neuroscience. 5: 10. PMID 21373358 DOI: 10.3389/Fncom.2011.00010  0.488
2011 Dunmyre JR, Del Negro CA, Rubin JE. Interactions of persistent sodium and calcium-activated nonspecific cationic currents yield dynamically distinct bursting regimes in a model of respiratory neurons. Journal of Computational Neuroscience. 31: 305-28. PMID 21234794 DOI: 10.1007/S10827-010-0311-Y  0.808
2011 Rubin JE, Bacak BJ, Molkov YI, Shevtsova NA, Smith JC, Rybak IA. Interacting oscillations in neural control of breathing: modeling and qualitative analysis. Journal of Computational Neuroscience. 30: 607-32. PMID 20927576 DOI: 10.1007/S10827-010-0281-0  0.769
2011 Wang J, Su J, Perez Gonzalez H, Rubin J. A reliability study of square wave bursting β-cells with noise Discrete and Continuous Dynamical Systems - Series B. 16: 569-588. DOI: 10.3934/Dcdsb.2011.16.569  0.313
2011 Dunmyre JR, Rubin JE. The emergence of synchronized bursting in a heterogeneous, highly clustered respiratory network Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P278  0.802
2011 Folias SE, Nikolić D, Rubin JE. Synchronization hubs may arise from strong rhythmic inhibition during gamma oscillations in primary visual cortex Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P277  0.812
2011 Curtu R, Rubin J. Interaction of canard and singular Hopf mechanisms in a neural model Siam Journal On Applied Dynamical Systems. 10: 1443-1479. DOI: 10.1137/110823171  0.462
2011 Parks HF, Ermentrout B, Rubin JE. The dynamics of a forced coupled network of active elements Physica D: Nonlinear Phenomena. 240: 554-567. DOI: 10.1016/J.Physd.2010.11.006  0.346
2010 Day J, Rubin J, Clermont G. Using nonlinear model predictive control to find optimal therapeutic strategies to modulate inflammation Mathematical Biosciences and Engineering. 7: 739-763. PMID 21077705 DOI: 10.3934/Mbe.2010.7.739  0.328
2010 Manica E, Medvedev GS, Rubin JE. First return maps for the dynamics of synaptically coupled conditional bursters. Biological Cybernetics. 103: 87-104. PMID 20614222 DOI: 10.1007/S00422-010-0399-1  0.802
2010 Arciero JC, Ermentrout GB, Upperman JS, Vodovotz Y, Rubin JE. Using a mathematical model to analyze the role of probiotics and inflammation in necrotizing enterocolitis. Plos One. 5: e10066. PMID 20419099 DOI: 10.1371/Journal.Pone.0010066  0.53
2010 Spardy L, Markin S, Prilutsky B, Rybak I, Rubin J. A dynamical systems analysis of afferent control in a neuro--mechanical model of locomotion Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P19  0.649
2010 Dunmyre JR, Rubin JE. Neuronal bursting: interactions of the persistent sodium and CAN currents Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-O4  0.806
2010 Ermentrout GB, Jalics JZ, Rubin JE. Stimulus-driven traveling solutions in continuum neuronal models with a general smooth firing rate function Siam Journal On Applied Mathematics. 70: 3039-3064. DOI: 10.1137/090775737  0.595
2010 Dunmyre JR, Rubin JE. Optimal Intrinsic Dynamics for Bursting in a Three-Cell Network Siam Journal On Applied Dynamical Systems. 9: 154-187. DOI: 10.1137/090765808  0.809
2010 Kubota S, Rubin J, Kitajima T, Nakamura T. A variety of competitive properties arising from STDP incorporating metaplastic regulation Artificial Life and Robotics. 15: 185-188. DOI: 10.1007/S10015-010-0791-X  0.399
2009 Day J, Rubin JE, Chow CC. Competition Between Transients in the Rate of Approach to a Fixed Point. Siam Journal On Applied Dynamical Systems. 8: 1523-1563. PMID 20011076 DOI: 10.1137/080718929  0.309
2009 Kubota S, Rubin J, Kitajima T. Modulation of LTP/LTD balance in STDP by an activity-dependent feedback mechanism Neural Networks. 22: 527-535. PMID 19616407 DOI: 10.1016/J.Neunet.2009.06.012  0.374
2009 Rubin JE, Hayes JA, Mendenhall JL, Del Negro CA. Calcium-activated nonspecific cation current and synaptic depression promote network-dependent burst oscillations. Proceedings of the National Academy of Sciences of the United States of America. 106: 2939-44. PMID 19196976 DOI: 10.1073/Pnas.0808776106  0.445
2009 Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA. Multiple rhythmic states in a model of the respiratory central pattern generator. Journal of Neurophysiology. 101: 2146-65. PMID 19193773 DOI: 10.1152/Jn.90958.2008  0.755
2009 Daun S, Rubin JE, Rybak IA. Control of oscillation periods and phase durations in half-center central pattern generators: a comparative mechanistic analysis. Journal of Computational Neuroscience. 27: 3-36. PMID 19130197 DOI: 10.1007/S10827-008-0124-4  0.678
2009 Vodovotz Y, Constantine G, Rubin J, Csete M, Voit EO, An G. Mechanistic simulations of inflammation: current state and future prospects. Mathematical Biosciences. 217: 1-10. PMID 18835282 DOI: 10.1016/J.Mbs.2008.07.013  0.302
2008 Daun S, Rubin J, Vodovotz Y, Clermont G. Equation-based models of dynamic biological systems Journal of Critical Care. 23: 585-594. PMID 19056027 DOI: 10.1016/J.Jcrc.2008.02.003  0.33
2008 Daun S, Rubin J, Vodovotz Y, Roy A, Parker R, Clermont G. An ensemble of models of the acute inflammatory response to bacterial lipopolysaccharide in rats: Results from parameter space reduction Journal of Theoretical Biology. 253: 843-853. PMID 18550083 DOI: 10.1016/J.Jtbi.2008.04.033  0.328
2008 Rubin J, Wechselberger M. The selection of mixed-mode oscillations in a Hodgkin-Huxley model with multiple timescales. Chaos (Woodbury, N.Y.). 18: 015105. PMID 18377086 DOI: 10.1063/1.2789564  0.328
2008 Guo Y, Rubin JE, McIntyre CC, Vitek JL, Terman D. Thalamocortical relay fidelity varies across subthalamic nucleus deep brain stimulation protocols in a data-driven computational model. Journal of Neurophysiology. 99: 1477-92. PMID 18171706 DOI: 10.1152/Jn.01080.2007  0.342
2008 Rubin JE. Emergent bursting in small networks of model conditional pacemakers in the pre-Bötzinger complex. Advances in Experimental Medicine and Biology. 605: 119-24. PMID 18085258 DOI: 10.1007/978-0-387-73693-8_21  0.51
2007 Zenker S, Rubin J, Clermont G. From inverse problems in mathematical physiology to quantitative differential diagnoses Plos Computational Biology. 3: 2072-2086. PMID 17997590 DOI: 10.1371/Journal.Pcbi.0030204  0.326
2007 Rubin J, Wechselberger M. Giant squid-hidden canard: The 3D geometry of the Hodgkin-Huxley model Biological Cybernetics. 97: 5-32. PMID 17458557 DOI: 10.1007/S00422-007-0153-5  0.352
2007 Rubin J, Josić K. The firing of an excitable neuron in the presence of stochastic trains of strong synaptic inputs Neural Computation. 19: 1251-1294. PMID 17381266 DOI: 10.1162/Neco.2007.19.5.1251  0.39
2007 Upperman JS, Camerini V, Lugo B, Yotov I, Sullivan J, Rubin J, Rubin J, Clermont G, Zamora R, Ermentrout GB, Ford HR, Vodovotz Y. Mathematical modeling in necrotizing enterocolitis--a new look at an ongoing problem. Journal of Pediatric Surgery. 42: 445-53. PMID 17336179 DOI: 10.1016/J.Jpedsurg.2006.10.053  0.49
2007 Gaiteri C, Rubin J. How intrinsic dynamics and coupling architecture interact to generate bursting dynamics in a model network of respiratory conditional pacemakers Bmc Neuroscience. 8: 184. DOI: 10.1186/1471-2202-8-S2-P184  0.487
2006 Rubin JE. Bursting induced by excitatory synaptic coupling in nonidentical conditional relaxation oscillators or square-wave bursters. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 021917. PMID 17025482 DOI: 10.1103/Physreve.74.021917  0.454
2006 Vodovotz Y, Chow CC, Bartels J, Lagoa C, Prince JM, Levy RM, Kumar R, Day J, Rubin J, Constantine G, Billiar TR, Fink MP, Clermont G. In silico models of acute inflammation in animals. Shock (Augusta, Ga.). 26: 235-44. PMID 16912648 DOI: 10.1097/01.Shk.0000225413.13866.Fo  0.31
2006 Day J, Rubin J, Vodovotz Y, Chow CC, Reynolds A, Clermont G. A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration. Journal of Theoretical Biology. 242: 237-56. PMID 16616206 DOI: 10.1016/J.Jtbi.2006.02.015  0.316
2006 Rubin J, Bose A. The geometry of neuronal recruitment Physica D: Nonlinear Phenomena. 221: 37-57. DOI: 10.1016/J.Physd.2006.07.012  0.458
2005 Bi GQ, Rubin J. Timing in synaptic plasticity: from detection to integration. Trends in Neurosciences. 28: 222-8. PMID 15866196 DOI: 10.1016/J.Tins.2005.02.002  0.335
2005 Rubin JE. Surprising effects of synaptic excitation. Journal of Computational Neuroscience. 18: 333-42. PMID 15830169 DOI: 10.1007/S10827-005-0340-0  0.461
2005 Rubin JE, Gerkin RC, Bi GQ, Chow CC. Calcium time course as a signal for spike-timing-dependent plasticity. Journal of Neurophysiology. 93: 2600-13. PMID 15625097 DOI: 10.1152/Jn.00803.2004  0.326
2005 Drover J, Rubin J, Su J, Ermentrout B. Analysis of a canard mechanism by which excitatory synaptic coupling can synchronize neurons at low firing frequencies Siam Journal On Applied Mathematics. 65: 69-92. DOI: 10.1137/S0036139903431233  0.482
2005 Best J, Borisyukt A, Rubin J, Terman D, Wechselberger M. The dynamic range of bursting in a model respiratory pacemaker network Siam Journal On Applied Dynamical Systems. 4: 1107-1139. DOI: 10.1137/050625540  0.499
2005 Josić K, Rubin J. Deriving information about architecture from activity patterns in coupled cell systems Siam Journal On Applied Dynamical Systems. 4: 53-77. DOI: 10.1137/040607587  0.375
2005 Siegler BA, Ritchey M, Rubin J. Spike-timing dependent plasticity as a mechanism for ocular dominance shift Neurocomputing. 65: 181-188. DOI: 10.1016/J.Neucom.2004.10.005  0.341
2004 Rubin J, Bose A. Localized activity patterns in excitatory neuronal networks. Network (Bristol, England). 15: 133-58. PMID 15214703 DOI: 10.1088/0954-898X_15_2_004  0.491
2004 Rubin JE, Terman D. High frequency stimulation of the subthalamic nucleus eliminates pathological thalamic rhythmicity in a computational model. Journal of Computational Neuroscience. 16: 211-35. PMID 15114047 DOI: 10.1023/B:Jcns.0000025686.47117.67  0.373
2004 Rubin JE. A nonlocal eigenvalue problem for the stability of a traveling wave in a neuronal medium Discrete and Continuous Dynamical Systems. 10: 925-940. DOI: 10.3934/Dcds.2004.10.925  0.314
2004 Rubin JE, Troy WC. Sustained spatial patterns of activity in neuronal populations without recurrent excitation Siam Journal On Applied Mathematics. 64: 1609-1635. DOI: 10.1137/S0036139903425806  0.422
2004 Su J, Rubin J, Terman D. Effects of noise on elliptic bursters Nonlinearity. 17: 133-157. DOI: 10.1088/0951-7715/17/1/009  0.329
2003 Hernández G, Rubin J, Munro P. The effect of spike redistribution in a reciprocally connected pair of neurons with spike timing-dependent plasticity Neurocomputing. 52: 347-353. DOI: 10.1016/S0925-2312(02)00830-5  0.394
2003 Osan R, Rubin J, Curtu R, Ermentrout B. Traveling waves in a one-dimensional integrate-and-fire neural network with finite support connectivity Neurocomputing. 52: 869-875. DOI: 10.1016/S0925-2312(02)00818-4  0.314
2002 Terman D, Rubin JE, Yew AC, Wilson CJ. Activity patterns in a model for the subthalamopallidal network of the basal ganglia. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 2963-76. PMID 11923461 DOI: 10.1523/Jneurosci.22-07-02963.2002  0.489
2002 Rubin J, Terman D. Synchronized activity and loss of synchrony amorsg heterogeneous conditional oscillators Siam Journal On Applied Dynamical Systems. 1: 146-174. DOI: 10.1137/S111111110240323X  0.455
2002 Osan R, Rubin J, Ermentrout B. Regular traveling waves in a one-dimensional network of theta neurons Siam Journal On Applied Mathematics. 62: 1197-1221. DOI: 10.1137/S0036139901387253  0.37
2001 Rubin J, Terman D, Chow C. Localized bumps of activity sustained by inhibition in a two-layer thalamic network. Journal of Computational Neuroscience. 10: 313-31. PMID 11443288 DOI: 10.1023/A:1011220332546  0.395
2001 Rubin JE. Steady states in an iterative model for multiplicative spike-timing-dependent plasticity. Network (Bristol, England). 12: 131-40. PMID 11405419 DOI: 10.1088/0954-898X/12/2/303  0.422
2001 Rubin J, Lee DD, Sompolinsky H. Equilibrium properties of temporally asymmetric Hebbian plasticity. Physical Review Letters. 86: 364-7. PMID 11177832 DOI: 10.1103/Physrevlett.86.364  0.347
2001 Terman D, Rubin JE, Yew AC, Wilson CJ. Synchronous rhythms in a model for the indirect pathway of the basal ganglia Neurocomputing. 38: 973-982. DOI: 10.1016/S0925-2312(01)00430-1  0.454
2000 Rubin J, Terman D. Analysis of clustered firing patterns in synaptically coupled networks of oscillators. Journal of Mathematical Biology. 41: 513-45. PMID 11196583 DOI: 10.1007/S002850000065  0.442
2000 Rubin J, Terman D. Geometric analysis of population rhythms in synaptically coupled neuronal networks. Neural Computation. 12: 597-645. PMID 10769324 DOI: 10.1162/089976600300015727  0.382
1999 Rubin JE. Stability, bifurcations and edge oscillations in standing pulse solutions to an inhomogeneous reaction-diffusion system Royal Society of Edinburgh - Proceedings A. 129: 1033-1079. DOI: 10.1017/S0308210500031073  0.332
1999 Rubin J, Terman D. Geometric analysis of neuronal firing patterns in network models with fast inhibitory synapses Neurocomputing. 26: 491-498. DOI: 10.1016/S0925-2312(99)00039-9  0.524
1997 Rubin JE, Jones CKRT. Bifurcations and edge oscillations in the semiconductor Fabry-Pérot interferometer Optics Communications. 140: 93-98. DOI: 10.1016/S0030-4018(97)00157-0  0.301
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