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Michael D. Daily, Ph.D. - Publications

Affiliations: 
2008 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics, Biochemistry, Bioinformatics Biology
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Daily MD, Baer MD, Mundy CJ. Divalent Ion Parameterization Strongly Affects Conformation and Interactions of an Anionic Biomimetic Polymer. The Journal of Physical Chemistry. B. PMID 26882842 DOI: 10.1021/Acs.Jpcb.5B12277  0.321
2015 Kim KW, Smith CA, Daily MD, Cort JR, Davin LB, Lewis NG. Trimeric structure of (+)-pinoresinol-forming dirigent protein at 1.95 Å resolution with three isolated active sites. The Journal of Biological Chemistry. 290: 1308-18. PMID 25411250 DOI: 10.1074/Jbc.M114.611780  0.328
2014 Daily MD, Olsen BN, Schlesinger PH, Ory DS, Baker NA. Improved Coarse-Grained Modeling of Cholesterol-Containing Lipid Bilayers. Journal of Chemical Theory and Computation. 10: 2137-2150. PMID 24910542 DOI: 10.1021/Ct401028G  0.305
2013 Daily MD, Olsen BN, Schlesinger PH, Ory DS, Baker NA. Improved Coarse-Grained Modeling of Cholesterol Activation in Lipid Bilayers Biophysical Journal. 104: 590a-591a. DOI: 10.1016/J.Bpj.2012.11.3281  0.318
2012 Daily MD, Makowski L, Phillips GN, Cui Q. Large-scale motions in the adenylate kinase solution ensemble: coarse-grained simulations and comparison with solution X-ray scattering. Chemical Physics. 396: 84-91. PMID 22711968 DOI: 10.1016/J.Chemphys.2011.08.015  0.356
2011 Daily MD, Phillips GN, Cui Q. Interconversion of functional motions between mesophilic and thermophilic adenylate kinases. Plos Computational Biology. 7: e1002103. PMID 21779157 DOI: 10.1016/J.Bpj.2010.12.1159  0.358
2010 Daily MD, Phillips GN, Cui Q. Many local motions cooperate to produce the adenylate kinase conformational transition. Journal of Molecular Biology. 400: 618-31. PMID 20471396 DOI: 10.1016/J.Jmb.2010.05.015  0.357
2010 Daily MD, Cui Q. The Adenylate Kinase Transition Requires Many Easy Motions, Not a Few Hard Ones Biophysical Journal. 98: 27a. DOI: 10.1016/J.Bpj.2009.12.160  0.337
2009 Demerdash ON, Daily MD, Mitchell JC. Structure-based predictive models for allosteric hot spots. Plos Computational Biology. 5: e1000531. PMID 19816556 DOI: 10.1371/Journal.Pcbi.1000531  0.387
2009 Daily MD, Gray JJ. Allosteric communication occurs via networks of tertiary and quaternary motions in proteins Plos Computational Biology. 5. PMID 19229311 DOI: 10.1371/Journal.Pcbi.1000293  0.523
2008 Daily MD, Upadhyaya TJ, Gray JJ. Contact rearrangements form coupled networks from local motions in allosteric proteins Proteins: Structure, Function and Genetics. 71: 455-466. PMID 17957766 DOI: 10.1002/Prot.21800  0.544
2007 Daily MD, Gray JJ. Local motions in a benchmark of allosteric proteins Proteins: Structure, Function and Genetics. 67: 385-399. PMID 17295319 DOI: 10.1002/Prot.21300  0.522
2005 Daily MD, Masica D, Sivasubramanian A, Somarouthu S, Gray JJ. CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock Proteins: Structure, Function and Genetics. 60: 181-186. PMID 15981262 DOI: 10.1002/Prot.20555  0.462
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