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Alexandra Badea, PhD - Publications

Affiliations: 
University of Patras, Panepistimioupoli Patron, Greece 
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Badea A, Schmalzigaug R, Kim W, Bonner P, Ahmed U, Johnson GA, Cofer G, Foster M, Anderson RJ, Badea C, Premont RT. Microcephaly with altered cortical layering in GIT1 deficiency revealed by quantitative neuroimaging. Magnetic Resonance Imaging. PMID 33010377 DOI: 10.1016/j.mri.2020.09.023  0.302
2020 Anderson RJ, Long CM, Calabrese ED, Robertson SH, Johnson GA, Cofer GP, O'Brien RJ, Badea A. Optimizing Diffusion Imaging Protocols for Structural Connectomics in Mouse Models of Neurological Conditions Frontiers in Physics. 8. DOI: 10.3389/Fphy.2020.00088  0.385
2019 Badea A, Wu W, Shuff J, Wang M, Anderson RJ, Qi Y, Johnson GA, Wilson JG, Koudoro S, Garyfallidis E, Colton CA, Dunson DB. Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. Frontiers in Neuroinformatics. 13: 72. PMID 31920610 DOI: 10.3389/Fninf.2019.00072  0.377
2019 Nouls JC, Virgincar RS, Culbert AG, Morand N, Bobbert DW, Yoder AD, Schopler RS, Bashir MR, Badea A, Hochgeschwender U, Driehuys B. Applications of 3D printing in small animal magnetic resonance imaging. Journal of Medical Imaging (Bellingham, Wash.). 6: 021605. PMID 31131288 DOI: 10.1117/1.Jmi.6.2.021605  0.427
2019 Badea A, Ng KL, Anderson RJ, Zhang J, Miller MI, O'Brien RJ. Magnetic resonance imaging of mouse brain networks plasticity following motor learning. Plos One. 14: e0216596. PMID 31067263 DOI: 10.1371/Journal.Pone.0216596  0.36
2019 Badea A, Delpratt NA, Anderson RJ, Dibb R, Qi Y, Wei H, Liu C, Wetsel WC, Avants BB, Colton C. Multivariate MR biomarkers better predict cognitive dysfunction in mouse models of Alzheimer's disease. Magnetic Resonance Imaging. PMID 30940494 DOI: 10.1016/J.Mri.2019.03.022  0.395
2018 Anderson RJ, Cook JJ, Delpratt N, Nouls JC, Gu B, McNamara JO, Avants BB, Johnson GA, Badea A. Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics. PMID 30565026 DOI: 10.1007/S12021-018-9410-0  0.41
2018 Tang R, Ketcha M, Badea A, Calabrese ED, Margulies DS, Vogelstein JT, Priebe CE, Sussman DL. Connectome Smoothing via Low-rank Approximations. Ieee Transactions On Medical Imaging. PMID 30530318 DOI: 10.1109/Tmi.2018.2885968  0.362
2018 Wang N, Anderson RJ, Badea A, Cofer G, Dibb R, Qi Y, Johnson GA. Whole mouse brain structural connectomics using magnetic resonance histology. Brain Structure & Function. PMID 30225830 DOI: 10.1007/S00429-018-1750-X  0.412
2018 Badea A, Kamnaksh A, Anderson RJ, Calabrese E, Long JB, Agoston DV. Repeated mild blast exposure in young adult rats results in dynamic and persistent microstructural changes in the brain. Neuroimage. Clinical. 18: 60-73. PMID 29868442 DOI: 10.1016/J.Nicl.2018.01.007  0.333
2018 Nouls JC, Badea A, Anderson RBJ, Cofer GP, Allan Johnson G. Diffusion tensor imaging using multiple coils for mouse brain connectomics. Nmr in Biomedicine. e3921. PMID 29675882 DOI: 10.1002/Nbm.3921  0.467
2016 Badea A, Kane L, Anderson RJ, Qi Y, Foster M, Cofer GP, Medvitz N, Buckley AF, Badea AK, Wetsel WC, Colton CA. The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease. Neuroimage. PMID 27521741 DOI: 10.1016/J.Neuroimage.2016.08.014  0.335
2016 Bhagat SL, Qiu S, Caffall ZF, Wan Y, Pan Y, Rodriquiz RM, Wetsel WC, Badea A, Hochgeschwender U, Calakos N. Mouse model of rare TOR1A variant found in sporadic focal dystonia impairs domains affected in DYT1 dystonia patients and animal models. Neurobiology of Disease. PMID 27168150 DOI: 10.1016/J.Nbd.2016.05.003  0.31
2016 Johnson GA, Anderson RJ, Cook JJ, Long C, Badea A. Image-processing pipelines: applications in magnetic resonance histology Proceedings of Spie. 9784: 978407. DOI: 10.1117/12.2203525  0.355
2015 Calabrese E, Badea A, Cofer G, Qi Y, Johnson GA. A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data. Cerebral Cortex (New York, N.Y. : 1991). PMID 26048951 DOI: 10.1093/Cercor/Bhv121  0.459
2015 Calabrese E, Badea A, Coe CL, Lubach GR, Shi Y, Styner MA, Johnson GA. A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. Neuroimage. 117: 408-16. PMID 26037056 DOI: 10.1016/J.Neuroimage.2015.05.072  0.48
2014 Calabrese E, Badea A, Coe CL, Lubach GR, Styner MA, Johnson GA. Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: time well spent? Human Brain Mapping. 35: 5667-85. PMID 25044786 DOI: 10.1002/Hbm.22578  0.38
2014 Johnson GA, Calabrese E, Little PB, Hedlund L, Qi Y, Badea A. Quantitative mapping of trimethyltin injury in the rat brain using magnetic resonance histology. Neurotoxicology. 42: 12-23. PMID 24631313 DOI: 10.1016/J.Neuro.2014.02.009  0.438
2013 Calabrese E, Badea A, Watson C, Johnson GA. A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. Neuroimage. 71: 196-206. PMID 23353030 DOI: 10.1016/J.Neuroimage.2013.01.017  0.402
2013 Clark D, Badea A, Johnson GA, Badea CT. Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8669. DOI: 10.1117/12.2007043  0.304
2012 Badea A, Gewalt S, Avants BB, Cook JJ, Johnson GA. Quantitative mouse brain phenotyping based on single and multispectral MR protocols. Neuroimage. 63: 1633-45. PMID 22836174 DOI: 10.1016/J.Neuroimage.2012.07.021  0.45
2012 Johnson GA, Calabrese E, Badea A, Paxinos G, Watson C. A multidimensional magnetic resonance histology atlas of the Wistar rat brain. Neuroimage. 62: 1848-56. PMID 22634863 DOI: 10.1016/J.Neuroimage.2012.05.041  0.436
2012 Badea A, Johnson GA. Magnetic resonance microscopy. Analytical Cellular Pathology (Amsterdam). 35: 205-27. PMID 22142643 DOI: 10.3233/Acp-2011-0050  0.378
2012 Wu T, Bae MH, Zhang M, Pan R, Badea A. A prior feature SVM-MRF based method for mouse brain segmentation. Neuroimage. 59: 2298-306. PMID 21988893 DOI: 10.1016/J.Neuroimage.2011.09.053  0.41
2011 Poot M, Badea A, Williams RW, Kas MJ. Identifying human disease genes through cross-species gene mapping of evolutionary conserved processes. Plos One. 6: e18612. PMID 21572526 DOI: 10.1371/Journal.Pone.0018612  0.322
2011 Bowden DM, Johnson GA, Zaborsky L, Green WD, Moore E, Badea A, Dubach MF, Bookstein FL. A symmetrical Waxholm canonical mouse brain for NeuroMaps. Journal of Neuroscience Methods. 195: 170-5. PMID 21163300 DOI: 10.1016/J.Jneumeth.2010.11.028  0.452
2011 Johnson GA, Badea A, Jiang Y. Quantitative neuromorphometry using magnetic resonance histology. Toxicologic Pathology. 39: 85-91. PMID 21119052 DOI: 10.1177/0192623310389622  0.406
2010 Johnson GA, Badea A, Brandenburg J, Cofer G, Fubara B, Liu S, Nissanov J. Waxholm space: an image-based reference for coordinating mouse brain research. Neuroimage. 53: 365-72. PMID 20600960 DOI: 10.1016/J.Neuroimage.2010.06.067  0.403
2010 Badea A, Johnson GA, Jankowsky JL. Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. Neuroimage. 50: 416-27. PMID 20035883 DOI: 10.1016/J.Neuroimage.2009.12.070  0.358
2009 Badea A, Johnson GA, Williams RW. Genetic dissection of the mouse CNS using magnetic resonance microscopy. Current Opinion in Neurology. 22: 379-86. PMID 19542887 DOI: 10.1097/Wco.0B013E32832D9B86  0.42
2009 Badea A, Johnson GA, Williams RW. Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. Neuroimage. 45: 1067-79. PMID 19349225 DOI: 10.1016/J.Neuroimage.2009.01.021  0.396
2009 Bae MH, Pan R, Wu T, Badea A. Automated segmentation of mouse brain images using extended MRF. Neuroimage. 46: 717-25. PMID 19236923 DOI: 10.1016/J.Neuroimage.2009.02.012  0.403
2008 Driehuys B, Nouls J, Badea A, Bucholz E, Ghaghada K, Petiet A, Hedlund LW. Small animal imaging with magnetic resonance microscopy. Ilar Journal / National Research Council, Institute of Laboratory Animal Resources. 49: 35-53. PMID 18172332 DOI: 10.1093/Ilar.49.1.35  0.419
2008 Sharief AA, Badea A, Dale AM, Johnson GA. Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. Neuroimage. 39: 136-45. PMID 17933556 DOI: 10.1016/J.Neuroimage.2007.08.028  0.43
2007 Badea A, Ali-Sharief AA, Johnson GA. Morphometric analysis of the C57BL/6J mouse brain. Neuroimage. 37: 683-93. PMID 17627846 DOI: 10.1016/J.Neuroimage.2007.05.046  0.475
2007 Johnson GA, Ali-Sharief A, Badea A, Brandenburg J, Cofer G, Fubara B, Gewalt S, Hedlund LW, Upchurch L. High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. Neuroimage. 37: 82-9. PMID 17574443 DOI: 10.1016/J.Neuroimage.2007.05.013  0.48
2007 Badea A, Nicholls PJ, Johnson GA, Wetsel WC. Neuroanatomical phenotypes in the reeler mouse. Neuroimage. 34: 1363-74. PMID 17185001 DOI: 10.1016/J.Neuroimage.2006.09.053  0.357
2005 Ali AA, Dale AM, Badea A, Johnson GA. Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. Neuroimage. 27: 425-35. PMID 15908233 DOI: 10.1016/J.Neuroimage.2005.04.017  0.434
2003 Badea A, Kostopoulos GK, Ioannides AA. Surface visualization of electromagnetic brain activity. Journal of Neuroscience Methods. 127: 137-47. PMID 12906943 DOI: 10.1016/S0165-0270(03)00100-6  0.584
1970 Johnson AG, Badea A, Burstein P, Nissanov J, Gustafson C, Brandenberg J, Liu S. Waxholm Space: Target Volumes for a Standard Coordinate System for the Mouse Brain Frontiers in Neuroinformatics. DOI: 10.3389/Conf.Neuro.11.2009.08.004  0.326
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