Valerie Reinke - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Genetics, Human Development

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kudron M, Gevirtzman L, Victorsen A, Lear BC, Gao J, Xu J, Samanta S, Frink E, Tran-Pearson A, Huynh C, Vafeados D, Hammonds A, Fisher W, Wall M, Wesseling G, ... ... Reinke V, et al. Binding profiles for 954 Drosophila and transcription factors reveal tissue specific regulatory relationships. Biorxiv : the Preprint Server For Biology. PMID 38293065 DOI: 10.1101/2024.01.18.576242  0.301
2023 Mazzetto M, Gonzalez LE, Sanchez N, Reinke V. Characterization of the distribution and dynamics of chromatin states in the germ line reveals substantial H3K4me3 remodeling during oogenesis. Genome Research. PMID 38164610 DOI: 10.1101/gr.278247.123  0.353
2023 Sanchez N, Gonzalez LE, Reinke V. The Upstream Sequence Transcription Complex Dictates Nucleosome Positioning and Promoter Accessibility at piRNA Genes in the Germ Line. Biorxiv : the Preprint Server For Biology. PMID 37215016 DOI: 10.1101/2023.05.10.540274  0.328
2021 McManus CE, Mazzetto M, Wei G, Han M, Reinke V. The zinc-finger protein OEF-1 stabilizes histone modification patterns and promotes efficient splicing in the C. elegans germ line. G3 (Bethesda, Md.). PMID 34519784 DOI: 10.1093/g3journal/jkab329  0.337
2020 Xu J, Kudron MM, Victorsen A, Gao J, Ammouri HN, Navarro FCP, Gevirtzman L, Waterston RH, White KP, Reinke V, Gerstein M. To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq. Nucleic Acids Research. PMID 33347581 DOI: 10.1093/nar/gkaa1155  0.754
2019 Han M, Wei G, McManus CE, Hillier LW, Reinke V. Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression. Bmc Genomics. 20: 500. PMID 31208332 DOI: 10.1186/S12864-019-5893-9  0.439
2017 Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, ... ... Reinke V, et al. The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. PMID 29284660 DOI: 10.1534/Genetics.117.300657  0.767
2017 McManus CE, Reinke V. The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Cevelopment in Caenorhabditis elegans. Genetics. PMID 29167199 DOI: 10.1534/Genetics.117.1123  0.497
2017 Han M, Zou W, Chang H, Yu Y, Zhang H, Li S, Cheng H, Wei G, Chen Y, Reinke V, Xu T, Kang L. A Systematic RNAi Screen Reveals a Novel Role of a Spindle Assembly Checkpoint Protein BuGZ in Synaptic Transmission in C. elegans. Frontiers in Molecular Neuroscience. 10: 141. PMID 28553202 DOI: 10.3389/Fnmol.2017.00141  0.415
2017 Sin O, de Jong T, Mata-Cabana A, Kudron M, Zaini MA, Aprile FA, Seinstra RI, Stroo E, Prins RW, Martineau CN, Wang HH, Hogewerf W, Steinhof A, Wanker EE, Vendruscolo M, ... ... Reinke V, et al. Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation. Molecular Cell. 65: 1096-1108.e6. PMID 28306505 DOI: 10.1016/J.Molcel.2017.02.022  0.744
2016 Boeck ME, Huynh C, Gevirtzman L, Thompson OA, Wang G, Kasper DM, Reinke V, Hillier LW, Waterston RH. The time resolved transcriptome of C. elegans. Genome Research. PMID 27531719 DOI: 10.1101/Gr.202663.115  0.426
2016 Weicksel SE, Mahadav A, Moyle M, Cipriani PG, Kudron M, Pincus Z, Bahmanyar S, Abriola L, Merkel J, Gutwein M, Fernandez AG, Piano F, Gunsalus KC, Reinke V. A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans. Development (Cambridge, England). PMID 27510972 DOI: 10.1242/Dev.140046  0.776
2016 Reinke V. Single cell analysis in C. elegans. Genesis (New York, N.Y. : 2000). 54: 150. PMID 27099198 DOI: 10.1002/Dvg.22933  0.319
2015 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... Reinke V, et al. Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. PMID 26560031 DOI: 10.1038/Nature16075  0.36
2014 Kasper DM, Wang G, Gardner KE, Johnstone TG, Reinke V. The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance. Developmental Cell. 31: 145-58. PMID 25373775 DOI: 10.1016/J.Devcel.2014.09.015  0.389
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Reinke V, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/Nature13668  0.417
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Reinke V, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.403
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... Reinke V, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/Nature13497  0.419
2014 Kasper DM, Gardner KE, Reinke V. Homeland security in the C. elegans germ line: insights into the biogenesis and function of piRNAs. Epigenetics. 9: 62-74. PMID 24149573 DOI: 10.4161/Epi.26647  0.335
2013 Reinke V, Krause M, Okkema P. Transcriptional regulation of gene expression in C. elegans. Wormbook : the Online Review of C. Elegans Biology. 1-34. PMID 23801596 DOI: 10.1895/Wormbook.1.45.2  0.494
2013 Fontrodona L, Porta-de-la-Riva M, Morán T, Niu W, Díaz M, Aristizábal-Corrales D, Villanueva A, Schwartz S, Reinke V, Cerón J. RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery. Plos Genetics. 9: e1003543. PMID 23754964 DOI: 10.1371/Journal.Pgen.1003543  0.473
2013 Kudron M, Niu W, Lu Z, Wang G, Gerstein M, Snyder M, Reinke V. Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs. Genome Biology. 14: R5. PMID 23347407 DOI: 10.1186/Gb-2013-14-1-R5  0.79
2012 Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, Angermann K, Hasse S, Rupprecht M, Vinis E, Tinney M, Preston E, Zinke A, Enst S, Teichgraber T, Janette J, ... ... Reinke V, et al. A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell. 150: 855-66. PMID 22901814 DOI: 10.1016/J.Cell.2012.08.001  0.366
2011 Nottke AC, Beese-Sims SE, Pantalena LF, Reinke V, Shi Y, Colaiácovo MP. SPR-5 is a histone H3K4 demethylase with a role in meiotic double-strand break repair. Proceedings of the National Academy of Sciences of the United States of America. 108: 12805-10. PMID 21768382 DOI: 10.1073/Pnas.1102298108  0.419
2011 Engelmann I, Griffon A, Tichit L, Montañana-Sanchis F, Wang G, Reinke V, Waterston RH, Hillier LW, Ewbank JJ. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans Plos One. 6. PMID 21602919 DOI: 10.1371/Journal.Pone.0019055  0.392
2011 Petrella LN, Wang W, Spike CA, Rechtsteiner A, Reinke V, Strome S. synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival. Development (Cambridge, England). 138: 1069-79. PMID 21343362 DOI: 10.1242/Dev.059501  0.481
2011 Waters KA, Reinke V. Extrinsic and intrinsic control of germ cell proliferation in Caenorhabditis elegans Molecular Reproduction and Development. 78: 151-160. PMID 21337453 DOI: 10.1002/Mrd.21289  0.647
2011 Kapelle WS, Reinke V. C. elegans meg-1 and meg-2 differentially interact with nanos family members to either promote or inhibit germ cell proliferation and survival. Genesis (New York, N.Y. : 2000). 49: 380-91. PMID 21305687 DOI: 10.1002/Dvg.20726  0.445
2011 Schober CS, Aydiner F, Booth CJ, Seli E, Reinke V. The kinase VRK1 is required for normal meiotic progression in mammalian oogenesis. Mechanisms of Development. 128: 178-90. PMID 21277975 DOI: 10.1016/J.Mod.2011.01.004  0.697
2011 Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, ... Reinke V, et al. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85. PMID 21177971 DOI: 10.1101/Gr.110189.110  0.363
2011 Spencer WC, Zeller G, Watson JD, Henz SR, Watkins KL, McWhirter RD, Petersen S, Sreedharan VT, Widmer C, Jo J, Reinke V, Petrella L, Strome S, Von Stetina SE, Katz M, et al. A spatial and temporal map of C. elegans gene expression. Genome Research. 21: 325-41. PMID 21177967 DOI: 10.1101/Gr.114595.110  0.511
2011 Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, ... ... Reinke V, et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Research. 21: 245-54. PMID 21177963 DOI: 10.1101/Gr.114587.110  0.428
2010 Lei H, Fukushige T, Niu W, Sarov M, Reinke V, Krause M. A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques. Plos One. 5: e15898. PMID 21209968 DOI: 10.1371/Journal.Pone.0015898  0.43
2010 Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, ... ... Reinke V, et al. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science (New York, N.Y.). 330: 1775-87. PMID 21177976 DOI: 10.1126/Science.1196914  0.423
2010 Waters K, Yang AZ, Reinke V. Genome-wide analysis of germ cell proliferation in C.elegans identifies VRK-1 as a key regulator of CEP-1/p53. Developmental Biology. 344: 1011-25. PMID 20599896 DOI: 10.1016/J.Ydbio.2010.06.022  0.716
2010 Li X, Panea C, Wiggins CH, Reinke V, Leslie C. Learning "graph-mer" motifs that predict gene expression trajectories in development. Plos Computational Biology. 6: e1000761. PMID 20454681 DOI: 10.1371/Journal.Pcbi.1000761  0.402
2010 Zhong M, Niu W, Lu ZJ, Sarov M, Murray JI, Janette J, Raha D, Sheaffer KL, Lam HY, Preston E, Slightham C, Hillier LW, Brock T, Agarwal A, Auerbach R, ... ... Reinke V, et al. Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response. Plos Genetics. 6: e1000848. PMID 20174564 DOI: 10.1371/Journal.Pgen.1000848  0.441
2009 Niwa R, Hada K, Moliyama K, Ohniwa RL, Tan YM, Olsson-Carter K, Chi W, Reinke V, Slack FJ. C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor. Cell Cycle (Georgetown, Tex.). 8: 4147-54. PMID 19923914 DOI: 10.4161/Cc.8.24.10292  0.8
2009 Klerkx EP, Alarcón P, Waters K, Reinke V, Sternberg PW, Askjaer P. Protein kinase VRK-1 regulates cell invasion and EGL-17/FGF signaling in Caenorhabditis elegans. Developmental Biology. 335: 12-21. PMID 19679119 DOI: 10.1016/J.Ydbio.2009.08.007  0.706
2009 Katz DJ, Edwards TM, Reinke V, Kelly WG. A C. elegans LSD1 demethylase contributes to germline immortality by reprogramming epigenetic memory. Cell. 137: 308-20. PMID 19379696 DOI: 10.1016/J.Cell.2009.02.015  0.332
2009 Chi W, Reinke V. DPL-1 (DP) acts in the germ line to coordinate ovulation and fertilization in C. elegans Mechanisms of Development. 126: 406-416. PMID 19368797 DOI: 10.1016/J.Mod.2009.01.008  0.801
2009 Reinke V, Cutter AD. Germline expression influences operon organization in the Caenorhabditis elegans genome. Genetics. 181: 1219-28. PMID 19204375 DOI: 10.1534/Genetics.108.099283  0.463
2009 Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans Genome Research. 19: 657-666. PMID 19181841 DOI: 10.1101/Gr.088112.108  0.414
2008 Reinke V. Gene regulation: a tale of germline mRNA tails. Current Biology : Cb. 18: R915-6. PMID 18957237 DOI: 10.1016/J.Cub.2008.08.001  0.432
2008 Kudron MM, Reinke V. C. elegans nucleostemin is required for larval growth and germline stem cell division. Plos Genetics. 4: e1000181. PMID 18725931 DOI: 10.1371/Journal.Pgen.1000181  0.778
2008 Boag PR, Atalay A, Robida S, Reinke V, Blackwell TK. Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis. The Journal of Cell Biology. 182: 543-57. PMID 18695045 DOI: 10.1083/Jcb.200801183  0.331
2008 Wang G, Reinke V. A C. elegans Piwi, PRG-1, regulates 21U-RNAs during spermatogenesis. Current Biology : Cb. 18: 861-7. PMID 18501605 DOI: 10.1016/J.Cub.2008.05.009  0.416
2008 Lin B, Reinke V. The candidate MAP kinase phosphorylation substrate DPL-1 (DP) promotes expression of the MAP kinase phosphatase LIP-1 in C. elegans germ cells. Developmental Biology. 316: 50-61. PMID 18304523 DOI: 10.1016/J.Ydbio.2007.12.042  0.388
2008 Spike CA, Bader J, Reinke V, Strome S. DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells. Development (Cambridge, England). 135: 983-93. PMID 18234720 DOI: 10.1242/Dev.015552  0.477
2008 Leacock SW, Reinke V. MEG-1 and MEG-2 are embryo-specific P-granule components required for germline development in Caenorhabditis elegans. Genetics. 178: 295-306. PMID 18202375 DOI: 10.1534/Genetics.107.080218  0.759
2007 Reinke V. Think globally, act locally. Nature Genetics. 39: 287-9. PMID 17325676 DOI: 10.1038/Ng0307-287  0.394
2007 Derry WB, Bierings R, van Iersel M, Satkunendran T, Reinke V, Rothman JH. Regulation of developmental rate and germ cell proliferation in Caenorhabditis elegans by the p53 gene network. Cell Death and Differentiation. 14: 662-70. PMID 17186023 DOI: 10.1038/Sj.Cdd.4402075  0.416
2006 Reinke V. Germline genomics. Wormbook : the Online Review of C. Elegans Biology. 1-10. PMID 18050476 DOI: 10.1895/wormbook.1.74.1  0.314
2006 Troemel ER, Chu SW, Reinke V, Lee SS, Ausubel FM, Kim DH. p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans. Plos Genetics. 2: e183. PMID 17096597 DOI: 10.1371/Journal.Pgen.0020183  0.432
2006 Leacock SW, Reinke V. Expression profiling of MAP kinase-mediated meiotic progression in Caenorhabditis elegans. Plos Genetics. 2: e174. PMID 17096596 DOI: 10.1371/Journal.Pgen.0020174  0.771
2006 Bender LB, Suh J, Carroll CR, Fong Y, Fingerman IM, Briggs SD, Cao R, Zhang Y, Reinke V, Strome S. MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line. Development (Cambridge, England). 133: 3907-17. PMID 16968818 DOI: 10.1242/Dev.02584  0.407
2006 Chi W, Reinke V. Promotion of oogenesis and embryogenesis in the C. elegans gonad by EFL-1/DPL-1 (E2F) does not require LIN-35 (pRB) Development. 133: 3147-3157. PMID 16854972 DOI: 10.1242/Dev.02490  0.813
2005 Thoemke K, Yi W, Ross JM, Kim S, Reinke V, Zarkower D. Genome-wide analysis of sex-enriched gene expression during C. elegans larval development. Developmental Biology. 284: 500-8. PMID 15987632 DOI: 10.1016/J.Ydbio.2005.05.017  0.459
2005 Whetstine JR, Ceron J, Ladd B, Dufourcq P, Reinke V, Shi Y. Regulation of tissue-specific and extracellular matrix-related genes by a class I histone deacetylase. Molecular Cell. 18: 483-90. PMID 15893731 DOI: 10.1016/J.Molcel.2005.04.006  0.437
2005 Fernandez AG, Gunsalus KC, Huang J, Chuang LS, Ying N, Liang HL, Tang C, Schetter AJ, Zegar C, Rual JF, Hill DE, Reinke V, Vidal M, Piano F. New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones. Genome Research. 15: 250-9. PMID 15687288 DOI: 10.1101/Gr.3194805  0.48
2004 Reinke V. Sex and the genome. Nature Genetics. 36: 548-9. PMID 15167926 DOI: 10.1038/Ng0604-548  0.33
2004 Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, ... ... Reinke V, et al. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research. 32: D560-7. PMID 14681481 DOI: 10.1093/Nar/Gkh055  0.379
2004 Reinke V, Gil IS, Ward S, Kazmer K. Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans. Development (Cambridge, England). 131: 311-23. PMID 14668411 DOI: 10.1242/Dev.00914  0.469
2003 Pellettieri J, Reinke V, Kim SK, Seydoux G. Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans. Developmental Cell. 5: 451-62. PMID 12967564 DOI: 10.1016/S1534-5807(03)00231-4  0.446
2002 Reinke V. Functional exploration of the C. elegans genome using DNA microarrays. Nature Genetics. 32: 541-6. PMID 12454651 DOI: 10.1038/Ng1039  0.453
2002 Piano F, Schetter AJ, Morton DG, Gunsalus KC, Reinke V, Kim SK, Kemphues KJ. Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans. Current Biology : Cb. 12: 1959-64. PMID 12445391 DOI: 10.1016/S0960-9822(02)01301-5  0.346
2002 Walhout AJ, Reboul J, Shtanko O, Bertin N, Vaglio P, Ge H, Lee H, Doucette-Stamm L, Gunsalus KC, Schetter AJ, Morton DG, Kemphues KJ, Reinke V, Kim SK, Piano F, et al. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Current Biology : Cb. 12: 1952-8. PMID 12445390 DOI: 10.1016/S0960-9822(02)01279-4  0.355
2001 Parant JM, Reinke V, Mims B, Lozano G. Organization, expression, and localization of the murine mdmx gene and pseudogene. Gene. 270: 277-83. PMID 11404026 DOI: 10.1016/S0378-1119(01)00432-2  0.363
2001 Jiang M, Ryu J, Kiraly M, Duke K, Reinke V, Kim SK. Genome-wide analysis of developmental and sex-regulated gene expression profiles in Caenorhabditis elegans Proceedings of the National Academy of Sciences. 98: 218-223. DOI: 10.1073/Pnas.98.1.218  0.441
2000 Reinke V, Smith HE, Nance J, Wang J, Van Doren C, Begley R, Jones SJ, Davis EB, Scherer S, Ward S, Kim SK. A global profile of germline gene expression in C. elegans. Molecular Cell. 6: 605-16. PMID 11030340 DOI: 10.1016/S1097-2765(00)00059-9  0.397
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