| Year |
Citation |
Score |
| 2019 |
Cheng M, Cao L, Ning K. Microbiome Big-Data Mining and Applications Using Single-Cell Technologies and Metagenomics Approaches Toward Precision Medicine. Frontiers in Genetics. 10: 972. PMID 31649735 DOI: 10.3389/Fgene.2019.00972 |
0.341 |
|
| 2019 |
Xi W, Gao Y, Cheng Z, Chen C, Han M, Yang P, Xiong G, Ning K. Using QC-Blind for Quality Control and Contamination Screening of Bacteria DNA Sequencing Data Without Reference Genome. Frontiers in Microbiology. 10: 1560. PMID 31354662 DOI: 10.3389/Fmicb.2019.01560 |
0.311 |
|
| 2019 |
Zhang R, Zhu X, Bai H, Ning K. Network Pharmacology Databases for Traditional Chinese Medicine: Review and Assessment. Frontiers in Pharmacology. 10: 123. PMID 30846939 DOI: 10.3389/Fphar.2019.00123 |
0.317 |
|
| 2017 |
Zhang RZ, Yu SJ, Bai H, Ning K. TCM-Mesh: The database and analytical system for network pharmacology analysis for TCM preparations. Scientific Reports. 7: 2821. PMID 28588237 DOI: 10.1038/S41598-017-03039-7 |
0.315 |
|
| 2017 |
Jing G, Sun Z, Wang H, Gong Y, Huang S, Ning K, Xu J, Su X. Parallel-META 3: Comprehensive taxonomical and functional analysis platform for efficient comparison of microbial communities. Scientific Reports. 7: 40371. PMID 28079128 DOI: 10.1038/Srep40371 |
0.357 |
|
| 2016 |
Murillo G, You N, Su X, Cui W, Reilly MP, Li M, Ning K, Cui X. MultiGeMS: Detection of SNVs from Multiple Samples Using Model Selection on High-Throughput Sequencing Data. Bioinformatics (Oxford, England). PMID 26787661 DOI: 10.1093/Bioinformatics/Btv753 |
0.321 |
|
| 2015 |
Wang X, Su X, Cui X, Ning K. MetaBoot: a machine learning framework of taxonomical biomarker discovery for different microbial communities based on metagenomic data. Peerj. 3: e993. PMID 26213658 DOI: 10.7717/Peerj.993 |
0.301 |
|
| 2014 |
Zhou Q, Su X, Ning K. Assessment of quality control approaches for metagenomic data analysis. Scientific Reports. 4: 6957. PMID 25376098 DOI: 10.1038/Srep06957 |
0.334 |
|
| 2014 |
Su X, Hu J, Huang S, Ning K. Rapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model. Scientific Reports. 4: 6393. PMID 25227622 DOI: 10.1038/Srep06393 |
0.3 |
|
| 2014 |
Cheng X, Su X, Chen X, Zhao H, Bo C, Xu J, Bai H, Ning K. Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan. Scientific Reports. 4: 5147. PMID 24888649 DOI: 10.1038/Srep05147 |
0.305 |
|
| 2014 |
Su X, Pan W, Song B, Xu J, Ning K. Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization. Plos One. 9: e89323. PMID 24595159 DOI: 10.1371/Journal.Pone.0089323 |
0.34 |
|
| 2014 |
Zhou Q, Su X, Jing G, Ning K. Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data. Genomics, Proteomics & Bioinformatics. 12: 52-6. PMID 24508279 DOI: 10.1016/J.Gpb.2014.01.002 |
0.318 |
|
| 2013 |
Zhou Q, Su X, Wang A, Xu J, Ning K. QC-Chain: fast and holistic quality control method for next-generation sequencing data. Plos One. 8: e60234. PMID 23565205 DOI: 10.1371/Journal.Pone.0060234 |
0.32 |
|
| 2012 |
Su X, Xu J, Ning K. Parallel-META: efficient metagenomic data analysis based on high-performance computation. Bmc Systems Biology. 6: S16. PMID 23046922 DOI: 10.1186/1752-0509-6-S1-S16 |
0.327 |
|
| 2012 |
Su X, Xu J, Ning K. Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data. Bioinformatics (Oxford, England). 28: 2493-501. PMID 22843983 DOI: 10.1093/Bioinformatics/Bts470 |
0.307 |
|
| 2012 |
Ning K, Fermin D, Nesvizhskii AI. Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data. Journal of Proteome Research. 11: 2261-71. PMID 22329341 DOI: 10.1021/Pr201052X |
0.323 |
|
| 2011 |
Ning K, Ng HK, Leong HW. Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences. International Journal of Data Mining and Bioinformatics. 5: 611-25. PMID 22295747 DOI: 10.1504/IJDMB.2011.045413 |
0.629 |
|
| 2011 |
Ning K, Leong HW. The multiple sequence sets: Problem and heuristic algorithms Journal of Combinatorial Optimization. 22: 778-796. DOI: 10.1007/S10878-010-9329-3 |
0.665 |
|
| 2010 |
Ning K, Nesvizhskii AI. The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment. Bmc Bioinformatics. 11: S14. PMID 21172049 DOI: 10.1186/1471-2105-11-S11-S14 |
0.322 |
|
| 2010 |
Ning K, Ng HK, Srihari S, Leong HW, Nesvizhskii AI. Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology. Bmc Bioinformatics. 11: 505. PMID 20939873 DOI: 10.1186/1471-2105-11-505 |
0.692 |
|
| 2010 |
Srihari S, Ning K, Leong HW. MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure. Bmc Bioinformatics. 11: 504. PMID 20939868 DOI: 10.1186/1471-2105-11-504 |
0.709 |
|
| 2010 |
Ng HK, Ning K, Leong HW. Two-phase Filtering Strategy for Efficient Peptide Identification from Mass Spectrometry. Journal of Proteomics & Bioinformatics. 3: 121-129. PMID 20717493 DOI: 10.4172/Jpb.1000130 |
0.649 |
|
| 2010 |
Ning K, Fermin D. SAW: a method to identify splicing events from RNA-Seq data based on splicing fingerprints. Plos One. 5: e12047. PMID 20706591 DOI: 10.1371/Journal.Pone.0012047 |
0.331 |
|
| 2010 |
Ning K, Fermin D, Nesvizhskii AI. Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets. Proteomics. 10: 2712-8. PMID 20455209 DOI: 10.1002/Pmic.200900473 |
0.316 |
|
| 2009 |
Srihari S, Ning K, Leong HW. Refining Markov Clustering for protein complex prediction by incorporating core-attachment structure. Genome Informatics. International Conference On Genome Informatics. 23: 159-68. PMID 20180271 |
0.681 |
|
| 2008 |
Ning K, Ye N, Leong HW. On preprocessing and antisymmetry in de novo peptide sequencing: improving efficiency and accuracy. Journal of Bioinformatics and Computational Biology. 6: 467-92. PMID 18574859 DOI: 10.1142/S0219720008003503 |
0.682 |
|
| 2008 |
Chua HN, Ning K, Sung WK, Leong HW, Wong L. Using indirect protein-protein interactions for protein complex prediction. Journal of Bioinformatics and Computational Biology. 6: 435-66. PMID 18574858 DOI: 10.1142/S0219720008003497 |
0.649 |
|
| 2008 |
Srihari S, Ng HK, Ning K, Leong HW. Detecting hubs and quasi cliques in scale-free networks Proceedings - International Conference On Pattern Recognition. |
0.651 |
|
| 2007 |
Ning K, Ng HK, Leong HW. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry. Genome Informatics. International Conference On Genome Informatics. 19: 119-30. PMID 18546510 DOI: 10.11234/Gi1990.19.119 |
0.659 |
|
| 2007 |
Chua HN, Ning K, Sung WK, Leong HW, Wong L. Using indirect protein-protein interactions for protein complex predication. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 97-109. PMID 17951816 |
0.624 |
|
| 2007 |
Ning K, Leong HW. Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 19-30. PMID 17951809 |
0.651 |
|
| 2007 |
Ning K, Chong KF, Leong HW. De novo peptide sequencing for mass spectra based on multi-charge strong tags Series On Advances in Bioinformatics and Computational Biology. 5: 287-296. |
0.631 |
|
| 2007 |
Ng HK, Ning K, Leong HW. A new approach for similarity queries of biological sequences in databases Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4426: 728-736. |
0.608 |
|
| 2006 |
Ning K, Ng HK, Leong HW. PepSOM: an algorithm for peptide identification by tandem mass spectrometry based on SOM. Genome Informatics. International Conference On Genome Informatics. 17: 194-205. PMID 17503392 DOI: 10.11234/Gi1990.17.2_194 |
0.681 |
|
| 2006 |
Ning K, Leong HW. The distribution and deposition algorithm for multiple oligo nucleotide arrays. Genome Informatics. International Conference On Genome Informatics. 17: 89-99. PMID 17503382 DOI: 10.11234/Gi1990.17.2_89 |
0.631 |
|
| 2006 |
Chong KF, Ning K, Leong HW, Pevzner P. Modeling and characterization of multi-charge mass spectra for peptide sequencing. Journal of Bioinformatics and Computational Biology. 4: 1329-52. PMID 17245817 DOI: 10.1142/S021972000600248X |
0.662 |
|
| 2006 |
Ning K, Leong HW. Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm. Bmc Bioinformatics. 7: S12. PMID 17217504 DOI: 10.1186/1471-2105-7-S4-S12 |
0.663 |
|
| 2006 |
Ning K, Ng HK, Leong HW. Finding patterns in biological sequences by longest common subsequences and shortest common supersequences Proceedings - Sixth Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2006. 53-60. DOI: 10.1109/BIBE.2006.253315 |
0.607 |
|
| 2006 |
Chong KF, Ning K, Leong HW, Pevzner P. Characterization of multi-charge mass spectra for peptide sequencing Series On Advances in Bioinformatics and Computational Biology. 3: 109-119. |
0.626 |
|
| 2006 |
Ning K, Chong KF, Leong HW. A database search algorithm for identification of peptides with multiple charges using tandem mass spectrometry Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3916: 2-13. |
0.634 |
|
| 2005 |
Ning K, Choi KP, Leong HW, Zhang L. A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays. Nucleic Acids Research. 33: e144. PMID 16192568 DOI: 10.1093/Nar/Gni147 |
0.616 |
|
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