| Year |
Citation |
Score |
| 2024 |
Ogega CO, Skinner NE, Schoenle MV, Wilcox XE, Frumento N, Wright DA, Paul HT, Sinnis-Bourozikas A, Clark KE, Figueroa A, Bjorkman PJ, Ray SC, Flyak AI, Bailey JR. Convergent evolution and targeting of diverse E2 epitopes by human broadly neutralizing antibodies are associated with HCV clearance. Immunity. PMID 38518779 DOI: 10.1016/j.immuni.2024.03.001 |
0.441 |
|
| 2023 |
Frumento N, Sinnis-Bourozikas A, Paul HT, Stavrakis G, Zahid MN, Wang S, Ray SC, Flyak AI, Shaw GM, Cox AL, Bailey JR. Neutralizing antibodies evolve to exploit vulnerable sites in the HCV envelope glycoprotein E2 and mediate spontaneous clearance of infection. Immunity. PMID 38171362 DOI: 10.1016/j.immuni.2023.12.004 |
0.481 |
|
| 2023 |
Liang TJ, Law JLM, Pietschmann T, Ray SC, Bukh J, Bull R, Chung RT, Tyrrell DL, Houghton M, Rice CM. Challenge Inoculum for Hepatitis C Virus Controlled Human Infection Model. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 77: S257-S261. PMID 37579208 DOI: 10.1093/cid/ciad336 |
0.43 |
|
| 2023 |
Skinner NE, Ogega CO, Frumento N, Clark KE, Paul H, Yegnasubramanian S, Schuebel K, Meyers J, Gupta A, Wheelan S, Cox AL, Crowe JE, Ray SC, Bailey JR. Corrigendum: Convergent antibody responses are associated with broad neutralization of hepatitis C virus. Frontiers in Immunology. 14: 1201033. PMID 37180140 DOI: 10.3389/fimmu.2023.1201033 |
0.318 |
|
| 2023 |
Skinner NE, Ogega CO, Frumento N, Clark KE, Yegnasubramanian S, Schuebel K, Meyers J, Gupta A, Wheelan S, Cox AL, Crowe JE, Ray SC, Bailey JR. Convergent antibody responses are associated with broad neutralization of hepatitis C virus. Frontiers in Immunology. 14: 1135841. PMID 37033983 DOI: 10.3389/fimmu.2023.1135841 |
0.46 |
|
| 2022 |
Frumento N, Figueroa A, Wang T, Zahid MN, Wang S, Massaccesi G, Stavrakis G, Crowe JE, Flyak AI, Ji H, Ray SC, Shaw G, Cox AL, Bailey JR. Repeated exposure to heterologous hepatitis C viruses associates with enhanced neutralizing antibody breadth and potency. The Journal of Clinical Investigation. PMID 35588376 DOI: 10.1172/JCI160058 |
0.448 |
|
| 2022 |
Ogega CO, Skinner NE, Flyak AI, Clark KE, Board NL, Bjorkman PJ, Crowe JE, Cox AL, Ray SC, Bailey JR. B cell overexpression of FCRL5 and PD-1 is associated with low antibody titers in HCV infection. Plos Pathogens. 18: e1010179. PMID 34990486 DOI: 10.1371/journal.ppat.1010179 |
0.376 |
|
| 2021 |
Kandathil AJ, Cox AL, Page K, Mohr D, Razaghi R, Ghanem KG, Tuddenham SA, Hsieh YH, Evans JL, Coller KE, Timp W, Celentano DD, Ray SC, Thomas DL. Plasma virome and the risk of blood-borne infection in persons with substance use disorder. Nature Communications. 12: 6909. PMID 34824209 DOI: 10.1038/s41467-021-26980-8 |
0.476 |
|
| 2021 |
Skinner NE, Vergara C, El-Diwany R, Paul H, Skaist A, Wheelan SJ, Thomas DL, Ray SC, Balagopal A, Bailey JR. Decreased Activated CD4 T Cell Repertoire Diversity After Antiretroviral Therapy in HIV-1/HCV Coinfection Correlates with CD4 T Cell Recovery. Viral Immunology. PMID 34672777 DOI: 10.1089/vim.2021.0027 |
0.311 |
|
| 2021 |
Clipman SJ, Mehta SH, Rodgers MA, Duggal P, Srikrishnan AK, Saravanan S, Balakrishnan P, Vasudevan CK, Ray SC, Kumar MS, Quinn TC, Cloherty GA, Lucas GM, Solomon SS. Spatiotemporal phylodynamics of hepatitis C among people who inject drugs in India. Hepatology (Baltimore, Md.). PMID 34008172 DOI: 10.1002/hep.31912 |
0.407 |
|
| 2020 |
Falade-Nwulia O, Hackman J, Mehta SH, McCormick SD, Kirk GD, Sulkowski M, Thomas D, Latkin C, Laeyendecker O, Ray SC. Factors associated with phylogenetic clustering of hepatitis C among people who inject drugs in Baltimore. Bmc Infectious Diseases. 20: 815. PMID 33167892 DOI: 10.1186/s12879-020-05546-x |
0.414 |
|
| 2019 |
Hackman J, Falade-Nwulia O, Patel EU, Mehta SH, Kirk GD, Astemborski J, Ray SC, Thomas DL, Laeyendecker O. Correlates of hepatitis C viral clustering among people who inject drugs in Baltimore. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104078. PMID 31669367 DOI: 10.1016/J.Meegid.2019.104078 |
0.4 |
|
| 2019 |
Kinchen VJ, Massaccesi G, Flyak AI, Mankowski MC, Colbert MD, Osburn WO, Ray SC, Cox AL, Crowe JE, Bailey JR. Plasma deconvolution identifies broadly neutralizing antibodies associated with hepatitis C virus clearance. The Journal of Clinical Investigation. 130. PMID 31408439 DOI: 10.1172/Jci130720 |
0.516 |
|
| 2019 |
Rose R, Rodriguez C, Dollar JJ, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O. Inconsistent temporal patterns of genetic variation of HCV among high-risk subjects may impact inference of transmission networks. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 30802530 DOI: 10.1016/J.Meegid.2019.02.025 |
0.509 |
|
| 2019 |
Hackman J, Falade-Nwulia O, Mehta S, Downing Z, Kirk G, Ray S, Thomas D, Laeyendecker O. A23 Population level diversification of hepatitis C viral strains over time among people who inject drugs in Baltimore, MD Virus Evolution. 5. DOI: 10.1093/Ve/Vez002.022 |
0.358 |
|
| 2019 |
Falade-Nwulia O, Hackman J, Mehta S, Sulkowski M, Latkin C, Thomas D, Downing Z, Latanich R, Kirk G, Laeyendecker O, Ray S. A22 Phylogenetic clustering of hepatitis C virus infection among people who inject drugs in Baltimore Virus Evolution. 5. DOI: 10.1093/Ve/Vez002.021 |
0.549 |
|
| 2018 |
Kinchen VJ, Zahid MN, Flyak AI, Soliman MG, Learn GH, Wang S, Davidson E, Doranz BJ, Ray SC, Cox AL, Crowe JE, Bjorkman PJ, Shaw GM, Bailey JR. Broadly Neutralizing Antibody Mediated Clearance of Human Hepatitis C Virus Infection. Cell Host & Microbe. 24: 717-730.e5. PMID 30439341 DOI: 10.1016/J.Chom.2018.10.012 |
0.59 |
|
| 2018 |
El-Diwany R, Soliman M, Sugawara S, Breitwieser F, Skaist A, Coggiano C, Sangal N, Chattergoon M, Bailey JR, Siliciano RF, Blankson JN, Ray SC, Wheelan SJ, Thomas DL, Balagopal A. CMPK2 and BCL-G are associated with type 1 interferon-induced HIV restriction in humans. Science Advances. 4: eaat0843. PMID 30083606 DOI: 10.1126/Sciadv.Aat0843 |
0.397 |
|
| 2018 |
Powell L, Wiederkehr RS, Damascus P, Fauvart M, Buja F, Stakenborg T, Ray SC, Fiorini P, Osburn WO. Rapid and sensitive detection of viral nucleic acids using silicon microchips. The Analyst. PMID 29741175 DOI: 10.1039/C8An00552D |
0.316 |
|
| 2018 |
Wang Z, Gurule EE, Brennan TP, Gerold JM, Kwon KJ, Hosmane NN, Kumar MR, Beg SA, Capoferri AA, Ray SC, Ho YC, Hill AL, Siliciano JD, Siliciano RF. Expanded cellular clones carrying replication-competent HIV-1 persist, wax, and wane. Proceedings of the National Academy of Sciences of the United States of America. PMID 29483265 DOI: 10.1073/Pnas.1720665115 |
0.465 |
|
| 2017 |
Mankowski MC, Kinchen VJ, Wasilewski LN, Flyak AI, Ray SC, Crowe JE, Bailey JR. Synergistic anti-HCV broadly neutralizing human monoclonal antibodies with independent mechanisms. Proceedings of the National Academy of Sciences of the United States of America. PMID 29255018 DOI: 10.1073/Pnas.1718441115 |
0.521 |
|
| 2017 |
Rose R, Lamers SL, Massaccesi G, Osburn W, Ray SC, Thomas DL, Cox AL, Laeyendecker O. Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 29253674 DOI: 10.1016/J.Meegid.2017.12.015 |
0.393 |
|
| 2017 |
Tolan NV, Horowitz GL, Graham CS, Hillyard D, Osburn W, Ray S. New Therapies for Treating Hepatitis C Virus: Impact on Laboratory Testing Recommendations and Clinical Management. Clinical Chemistry. PMID 29018029 DOI: 10.1373/Clinchem.2016.266569 |
0.578 |
|
| 2017 |
Bailey JR, Flyak AI, Cohen VJ, Li H, Wasilewski LN, Snider AE, Wang S, Learn GH, Kose N, Loerinc L, Lampley R, Cox AL, Pfaff JM, Doranz BJ, Shaw GM, ... Ray SC, et al. Broadly neutralizing antibodies with few somatic mutations and hepatitis C virus clearance. Jci Insight. 2. PMID 28469084 DOI: 10.1172/Jci.Insight.92872 |
0.543 |
|
| 2017 |
El-Diwany R, Breitwieser FP, Soliman M, Skaist AM, Srikrishna G, Blankson JN, Ray SC, Wheelan SJ, Thomas DL, Balagopal A. Intracellular HIV-1 rna and CD4+ t cell activation in patients starting antiretrovirals. Aids (London, England). PMID 28358734 DOI: 10.1097/Qad.0000000000001480 |
0.336 |
|
| 2017 |
El-Diwany R, Cohen VJ, Mankowski MC, Wasilewski LN, Brady JK, Snider AE, Osburn WO, Murrell B, Ray SC, Bailey JR. Extra-epitopic hepatitis C virus polymorphisms confer resistance to broadly neutralizing antibodies by modulating binding to scavenger receptor B1. Plos Pathogens. 13: e1006235. PMID 28235087 DOI: 10.1371/Journal.Ppat.1006235 |
0.504 |
|
| 2016 |
Wasilewski L, Ray S, Bailey JR. Hepatitis C virus resistance to broadly neutralizing antibodies measured using replication competent virus and pseudoparticles. The Journal of General Virology. PMID 27667373 DOI: 10.1099/Jgv.0.000608 |
0.562 |
|
| 2016 |
Wasilewski LN, El-Diwany R, Munshaw S, Snider AE, Brady JK, Osburn WO, Ray SC, Bailey JR. A hepatitis C virus envelope polymorphism confers resistance to neutralization by polyclonal sera and broadly neutralizing monoclonal antibodies. Journal of Virology. PMID 26819308 DOI: 10.1128/Jvi.02837-15 |
0.559 |
|
| 2016 |
Torimiro J, Tchapda L, Boda M, Bimela J, Netski D, Takou D, Burke D, Tamoufe U, Mpoudi-Ngole E, Luma H, Njoya O, Mbacham W, Wolfe N, Ray S. Hepatitis C Virus Genetic Diversity and Drug Mutational Analysis in Cameroon: 1992 to 2013 British Microbiology Research Journal. 17: 1-10. DOI: 10.9734/Bmrj/2016/28823 |
0.404 |
|
| 2015 |
El-Diwany R, Wasilewski L, Witwer KW, Bailey JR, Page K, Ray SC, Cox AL, Thomas DL, Balagopal A. Acute Hepatitis C Virus Infection Induces Consistent Changes in Circulating miRNAs that are Associated with Non-Lytic Hepatocyte Release. Journal of Virology. PMID 26157120 DOI: 10.1128/Jvi.00955-15 |
0.439 |
|
| 2015 |
Newman RM, Lamers SL, Weiner B, Ray SC, Colgrove RC, Diaz F, Jing L, Wang K, Saif S, Young S, Henn M, Laeyendecker O, Tobian AA, Cohen JI, Koelle DM, et al. Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2. Journal of Virology. 89: 8219-32. PMID 26018166 DOI: 10.1128/Jvi.01303-15 |
0.325 |
|
| 2015 |
Lamers SL, Newman RM, Laeyendecker O, Tobian AA, Colgrove RC, Ray SC, Koelle DM, Cohen J, Knipe DM, Quinn TC. Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins. Journal of Virology. 89: 8206-18. PMID 26018161 DOI: 10.1128/Jvi.01302-15 |
0.371 |
|
| 2015 |
Bailey JR, Dowd KA, Snider AE, Osburn WO, Mehta SH, Kirk GD, Thomas DL, Ray SC. CD4+ T-Cell-Dependent Reduction in Hepatitis C Virus-Specific Neutralizing Antibody Responses After Coinfection With Human Immunodeficiency Virus. The Journal of Infectious Diseases. PMID 25754978 DOI: 10.1093/Infdis/Jiv139 |
0.775 |
|
| 2015 |
Bailey JR, Wasilewski LN, Snider AE, El-Diwany R, Osburn WO, Keck Z, Foung SK, Ray SC. Naturally selected hepatitis C virus polymorphisms confer broad neutralizing antibody resistance. The Journal of Clinical Investigation. 125: 437-47. PMID 25500884 DOI: 10.1172/Jci78794 |
0.532 |
|
| 2015 |
Ray SC, Thomas DL. 156 – Hepatitis C Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases. 1904-1927. DOI: 10.1016/B978-1-4557-4801-3.00156-9 |
0.394 |
|
| 2014 |
Graw F, Balagopal A, Kandathil AJ, Ray SC, Thomas DL, Ribeiro RM, Perelson AS. Inferring viral dynamics in chronically HCV infected patients from the spatial distribution of infected hepatocytes. Plos Computational Biology. 10: e1003934. PMID 25393308 DOI: 10.1371/Journal.Pcbi.1003934 |
0.529 |
|
| 2014 |
Hutchison C, Kwong A, Ray S, Struble K, Swan T, Miller V. Accelerating drug development through collaboration: the Hepatitis C Drug Development Advisory Group. Clinical Pharmacology and Therapeutics. 96: 162-5. PMID 24853733 DOI: 10.1038/Clpt.2014.113 |
0.464 |
|
| 2014 |
Balagopal A, Kandathil AJ, Higgins YH, Wood J, Richer J, Quinn J, Eldred L, Li Z, Ray SC, Sulkowski MS, Thomas DL. Antiretroviral therapy, interferon sensitivity, and virologic setpoint in human immunodeficiency virus/hepatitis C virus coinfected patients. Hepatology (Baltimore, Md.). 60: 477-86. PMID 24706559 DOI: 10.1002/Hep.27158 |
0.571 |
|
| 2014 |
Grabowski MK, Lessler J, Redd AD, Kagaayi J, Laeyendecker O, Ndyanabo A, Nelson MI, Cummings DA, Bwanika JB, Mueller AC, Reynolds SJ, Munshaw S, Ray SC, Lutalo T, Manucci J, et al. The role of viral introductions in sustaining community-based HIV epidemics in rural Uganda: evidence from spatial clustering, phylogenetics, and egocentric transmission models. Plos Medicine. 11: e1001610. PMID 24595023 DOI: 10.1371/Journal.Pmed.1001610 |
0.354 |
|
| 2014 |
Osburn WO, Snider AE, Wells BL, Latanich R, Bailey JR, Thomas DL, Cox AL, Ray SC. Clearance of hepatitis C infection is associated with the early appearance of broad neutralizing antibody responses. Hepatology (Baltimore, Md.). 59: 2140-51. PMID 24425349 DOI: 10.1002/Hep.27013 |
0.564 |
|
| 2013 |
Torimiro JN, Mao Q, Wolfe ND, Tamoufe U, Weil A, Ngole EM, Burke DS, Ray SC, Netski D. Molecular epidemiology of GB type C virus among individuals exposed to hepatitis C virus in Cameroon. Microbiology Research. 4: 1-4. PMID 34178297 DOI: 10.4081/mr.2013.e1 |
0.438 |
|
| 2013 |
Kandathil AJ, Graw F, Quinn J, Hwang HS, Torbenson M, Perelson AS, Ray SC, Thomas DL, Ribeiro RM, Balagopal A. Use of laser capture microdissection to map hepatitis C virus-positive hepatocytes in human liver. Gastroenterology. 145: 1404-13.e1-10. PMID 23973767 DOI: 10.1053/J.Gastro.2013.08.034 |
0.543 |
|
| 2013 |
Torimiro JN, Mao Q, Wolfe ND, Tamoufe U, Weil A, Mpoudi Ngole E, Burke DS, Ray SC, Netski D. Molecular epidemiology of GB type C virus among individuals exposed to hepatitis C virus in Cameroon Microbiology Research. 4: 1. DOI: 10.4081/Mr.2013.E1 |
0.526 |
|
| 2012 |
Bailey JR, Laskey S, Wasilewski LN, Munshaw S, Fanning LJ, Kenny-Walsh E, Ray SC. Constraints on viral evolution during chronic hepatitis C virus infection arising from a common-source exposure. Journal of Virology. 86: 12582-90. PMID 22973048 DOI: 10.1128/Jvi.01440-12 |
0.583 |
|
| 2012 |
Burke KP, Munshaw S, Osburn WO, Levine J, Liu L, Sidney J, Sette A, Ray SC, Cox AL. Immunogenicity and cross-reactivity of a representative ancestral sequence in hepatitis C virus infection. Journal of Immunology (Baltimore, Md. : 1950). 188: 5177-88. PMID 22508927 DOI: 10.4049/Jimmunol.1103008 |
0.504 |
|
| 2012 |
Munshaw S, Bailey JR, Liu L, Osburn WO, Burke KP, Cox AL, Ray SC. Computational reconstruction of Bole1a, a representative synthetic hepatitis C virus subtype 1a genome. Journal of Virology. 86: 5915-21. PMID 22438535 DOI: 10.1128/Jvi.05959-11 |
0.551 |
|
| 2012 |
Munshaw S, Hwang HS, Torbenson M, Quinn J, Hansen KD, Astemborski J, Mehta SH, Ray SC, Thomas DL, Balagopal A. Laser captured hepatocytes show association of butyrylcholinesterase gene loss and fibrosis progression in hepatitis C-infected drug users. Hepatology (Baltimore, Md.). 56: 544-54. PMID 22331678 DOI: 10.1002/Hep.25655 |
0.522 |
|
| 2012 |
Liu L, Fisher BE, Thomas DL, Cox AL, Ray SC. Spontaneous clearance of primary acute hepatitis C virus infection correlated with high initial viral RNA level and rapid HVR1 evolution. Hepatology (Baltimore, Md.). 55: 1684-91. PMID 22234804 DOI: 10.1002/Hep.25575 |
0.56 |
|
| 2012 |
Sabo MC, Luca VC, Ray SC, Bukh J, Fremont DH, Diamond MS. Hepatitis C virus epitope exposure and neutralization by antibodies is affected by time and temperature. Virology. 422: 174-84. PMID 22078164 DOI: 10.1016/J.Virol.2011.10.023 |
0.509 |
|
| 2011 |
Eshleman SH, Hudelson SE, Redd AD, Wang L, Debes R, Chen YQ, Martens CA, Ricklefs SM, Selig EJ, Porcella SF, Munshaw S, Ray SC, Piwowar-Manning E, McCauley M, Hosseinipour MC, et al. Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial. The Journal of Infectious Diseases. 204: 1918-26. PMID 21990420 DOI: 10.1093/Infdis/Jir651 |
0.356 |
|
| 2011 |
Ng OT, Munshaw S, Lamers SL, Chew KK, Lin L, Redd AD, Manucci J, Quinn TC, Ray SC, Chua A, Leo YS, Laeyendecker O. Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01_AE/B recombinant forms. Aids Research and Human Retroviruses. 27: 1135-7. PMID 21235306 DOI: 10.1089/Aid.2010.0364 |
0.392 |
|
| 2010 |
Mehta SH, Vogt SL, Srikrishnan AK, Vasudevan CK, Murugavel KG, Saravanan S, Anand S, Kumar MS, Ray SC, Celentano DD, Solomon S, Solomon SS. Epidemiology of hepatitis C virus infection & liver disease among injection drug users (IDUs) in Chennai, India. The Indian Journal of Medical Research. 132: 706-14. PMID 21245619 |
0.5 |
|
| 2010 |
Salgado M, Brennan TP, O'Connell KA, Bailey JR, Ray SC, Siliciano RF, Blankson JN. Evolution of the HIV-1 nef gene in HLA-B*57 positive elite suppressors. Retrovirology. 7: 94. PMID 21059238 DOI: 10.1186/1742-4690-7-94 |
0.403 |
|
| 2010 |
Towler WI, James MM, Ray SC, Wang L, Donnell D, Mwatha A, Guay L, Nakabiito C, Musoke P, Jackson JB, Eshleman SH. Analysis of HIV diversity using a high-resolution melting assay. Aids Research and Human Retroviruses. 26: 913-8. PMID 20666583 DOI: 10.1089/Aid.2009.0259 |
0.355 |
|
| 2010 |
Fletcher NF, Yang JP, Farquhar MJ, Hu K, Davis C, He Q, Dowd K, Ray SC, Krieger SE, Neyts J, Baumert TF, Balfe P, McKeating JA, Wong-Staal F. Hepatitis C virus infection of neuroepithelioma cell lines. Gastroenterology. 139: 1365-74. PMID 20538002 DOI: 10.1053/J.Gastro.2010.06.008 |
0.747 |
|
| 2010 |
O'Connell KA, Brennan TP, Bailey JR, Ray SC, Siliciano RF, Blankson JN. Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus. Journal of Virology. 84: 7018-28. PMID 20444904 DOI: 10.1128/Jvi.00548-10 |
0.431 |
|
| 2010 |
Liu L, Fisher BE, Dowd KA, Astemborski J, Cox AL, Ray SC. Acceleration of hepatitis C virus envelope evolution in humans is consistent with progressive humoral immune selection during the transition from acute to chronic infection Journal of Virology. 84: 5067-5077. PMID 20200239 DOI: 10.1128/Jvi.02265-09 |
0.748 |
|
| 2010 |
Thio CL, Ray SC, Datta S, Panigrahi R, Biswas A, Chakravarty R. Genetic linkage of hepatitis B virus in peripheral blood leukocytes provides evidence for contamination. Journal of Virology. 84: 2184-6. PMID 20097886 DOI: 10.1128/Jvi.02263-09 |
0.373 |
|
| 2010 |
Osburn WO, Fisher BE, Dowd KA, Urban G, Liu L, Ray SC, Thomas DL, Cox AL. Spontaneous control of primary hepatitis C virus infection and immunity against persistent reinfection. Gastroenterology. 138: 315-24. PMID 19782080 DOI: 10.1053/J.Gastro.2009.09.017 |
0.755 |
|
| 2009 |
Fan X, Mao Q, Zhou D, Lu Y, Xing J, Xu Y, Ray SC, Di Bisceglie AM. High diversity of hepatitis C viral quasispecies is associated with early virological response in patients undergoing antiviral therapy. Hepatology (Baltimore, Md.). 50: 1765-72. PMID 19937690 DOI: 10.1002/Hep.23290 |
0.538 |
|
| 2009 |
O'Connell KA, Xu J, Durbin AP, Apuzzo LG, Imteyaz H, Williams TM, Ray SC, Margolick JB, Siliciano RF, Blankson JN. HIV-1 evolution following transmission to an HLA-B*5801-positive patient. The Journal of Infectious Diseases. 200: 1820-4. PMID 19909081 DOI: 10.1086/648377 |
0.426 |
|
| 2009 |
Balagopal A, Ray SC, De Oca RM, Sutcliffe CG, Vivekanandan P, Higgins Y, Mehta SH, Moore RD, Sulkowski MS, Thomas DL, Torbenson MS. Kupffer cells are depleted with HIV immunodeficiency and partially recovered with antiretroviral immune reconstitution. Aids (London, England). 23: 2397-404. PMID 19773633 DOI: 10.1097/Qad.0B013E3283324344 |
0.421 |
|
| 2009 |
Shiu C, Cunningham CK, Greenough T, Muresan P, Sanchez-Merino V, Carey V, Jackson JB, Ziemniak C, Fox L, Belzer M, Ray SC, Luzuriaga K, Persaud D. Identification of ongoing human immunodeficiency virus type 1 (HIV-1) replication in residual viremia during recombinant HIV-1 poxvirus immunizations in patients with clinically undetectable viral loads on durable suppressive highly active antiretroviral therapy. Journal of Virology. 83: 9731-42. PMID 19605490 DOI: 10.1128/Jvi.00570-09 |
0.496 |
|
| 2009 |
Wind-Rotolo M, Durand C, Cranmer L, Reid A, Martinson N, Doherty M, Jilek BL, Kagaayi J, Kizza A, Pillay V, Laeyendecker O, Reynolds SJ, Eshleman SH, Lau B, Ray SC, et al. Identification of nevirapine-resistant HIV-1 in the latent reservoir after single-dose nevirapine to prevent mother-to-child transmission of HIV-1. The Journal of Infectious Diseases. 199: 1301-9. PMID 19338474 DOI: 10.1086/597759 |
0.378 |
|
| 2009 |
Dowd KA, Netski DM, Wang XH, Cox AL, Ray SC. Selection pressure from neutralizing antibodies drives sequence evolution during acute infection with hepatitis C virus. Gastroenterology. 136: 2377-86. PMID 19303013 DOI: 10.1053/J.Gastro.2009.02.080 |
0.711 |
|
| 2008 |
Hoffman CJ, Ray SC. Severe pruritus after completing pegylated interferon for hepatitis C. The Aids Reader. 18: 562-5. PMID 19062400 |
0.491 |
|
| 2008 |
Rutebemberwa A, Ray SC, Astemborski J, Levine J, Liu L, Dowd KA, Clute S, Wang C, Korman A, Sette A, Sidney J, Pardoll DM, Cox AL. High-programmed death-1 levels on hepatitis C virus-specific T cells during acute infection are associated with viral persistence and require preservation of cognate antigen during chronic infection. Journal of Immunology (Baltimore, Md. : 1950). 181: 8215-25. PMID 19050238 DOI: 10.4049/Jimmunol.181.12.8215 |
0.745 |
|
| 2008 |
Wölfl M, Rutebemberwa A, Mosbruger T, Mao Q, Li HM, Netski D, Ray SC, Pardoll D, Sidney J, Sette A, Allen T, Kuntzen T, Kavanagh DG, Kuball J, Greenberg PD, et al. Hepatitis C virus immune escape via exploitation of a hole in the T cell repertoire. Journal of Immunology (Baltimore, Md. : 1950). 181: 6435-46. PMID 18941234 DOI: 10.4049/Jimmunol.181.9.6435 |
0.511 |
|
| 2008 |
Dowd KA, Hershow RC, Yawetz S, Larussa P, Diaz C, Landesman SH, Paul ME, Read JS, Lu M, Thomas DL, Netski DM, Ray SC. Maternal neutralizing antibody and transmission of hepatitis C virus to infants. The Journal of Infectious Diseases. 198: 1651-5. PMID 18928374 DOI: 10.1086/593067 |
0.743 |
|
| 2008 |
Netski DM, Mao Q, Ray SC, Klein RS. Genetic divergence of hepatitis C virus: the role of HIV-related immunosuppression. Journal of Acquired Immune Deficiency Syndromes (1999). 49: 136-41. PMID 18769357 DOI: 10.1097/Qai.0B013E3181869A6F |
0.593 |
|
| 2008 |
Maheshwari A, Ray S, Thuluvath PJ. Acute hepatitis C The Lancet. 372: 321-332. PMID 18657711 DOI: 10.1016/S0140-6736(08)61116-2 |
0.557 |
|
| 2008 |
Bailey JR, O'Connell K, Yang HC, Han Y, Xu J, Jilek B, Williams TM, Ray SC, Siliciano RF, Blankson JN. Transmission of human immunodeficiency virus type 1 from a patient who developed AIDS to an elite suppressor. Journal of Virology. 82: 7395-410. PMID 18495769 DOI: 10.1128/Jvi.00800-08 |
0.449 |
|
| 2008 |
Agwu A, Lindsey JC, Ferguson K, Zhang H, Spector S, Rudy BJ, Ray SC, Douglas SD, Flynn PM, Persaud D. Analyses of HIV-1 drug-resistance profiles among infected adolescents experiencing delayed antiretroviral treatment switch after initial nonsuppressive highly active antiretroviral therapy Aids Patient Care and Stds. 22: 545-552. PMID 18479228 DOI: 10.1089/Apc.2007.0200 |
0.407 |
|
| 2008 |
Balagopal A, Philp FH, Astemborski J, Block TM, Mehta A, Long R, Kirk GD, Mehta SH, Cox AL, Thomas DL, Ray SC. Human immunodeficiency virus-related microbial translocation and progression of hepatitis C. Gastroenterology. 135: 226-33. PMID 18457674 DOI: 10.1053/J.Gastro.2008.03.022 |
0.443 |
|
| 2008 |
Vivekanandan P, Kannangai R, Ray SC, Thomas DL, Torbenson M. Comprehensive genetic and epigenetic analysis of occult hepatitis B from liver tissue samples. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 46: 1227-36. PMID 18444860 DOI: 10.1086/529437 |
0.423 |
|
| 2008 |
Andrade A, Bailey JR, Xu J, Philp FH, Quinn TC, Williams TM, Ray SC, Thomas DL, Blankson JN. CD4+ T cell depletion in an untreated HIV type 1-infected human leukocyte antigen-B*5801-positive patient with an undetectable viral load. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 46: e78-82. PMID 18444844 DOI: 10.1086/529387 |
0.427 |
|
| 2007 |
Persaud D, Palumbo P, Ziemniak C, Chen J, Ray SC, Hughes M, Havens P, Purswani M, Gaur AH, Chadwick EG. Early archiving and predominance of nonnucleoside reverse transcriptase inhibitor-resistant HIV-1 among recently infected infants born in the United States. The Journal of Infectious Diseases. 195: 1402-10. PMID 17436219 DOI: 10.1086/513871 |
0.393 |
|
| 2007 |
Persaud D, Ray SC, Kajdas J, Ahonkhai A, Siberry GK, Ferguson K, Ziemniak C, Quinn TC, Casazza JP, Zeichner S, Gange SJ, Watson DC. Slow human immunodeficiency virus type 1 evolution in viral reservoirs in infants treated with effective antiretroviral therapy. Aids Research and Human Retroviruses. 23: 381-90. PMID 17411371 DOI: 10.1089/Aid.2006.0175 |
0.434 |
|
| 2007 |
Wang XH, Netski DM, Astemborski J, Mehta SH, Torbenson MS, Thomas DL, Ray SC. Progression of fibrosis during chronic hepatitis C is associated with rapid virus evolution. Journal of Virology. 81: 6513-22. PMID 17329332 DOI: 10.1128/Jvi.02276-06 |
0.559 |
|
| 2006 |
Ziemniak C, George-Agwu A, Moss WJ, Ray SC, Persaud D. A sensitive genotyping assay for detection of drug resistance mutations in reverse transcriptase of HIV-1 subtypes B and C in samples stored as dried blood spots or frozen RNA extracts. Journal of Virological Methods. 136: 238-47. PMID 16828172 DOI: 10.1016/J.Jviromet.2006.05.030 |
0.406 |
|
| 2006 |
Bailey JR, Sedaghat AR, Kieffer T, Brennan T, Lee PK, Wind-Rotolo M, Haggerty CM, Kamireddi AR, Liu Y, Lee J, Persaud D, Gallant JE, Cofrancesco J, Quinn TC, Wilke CO, ... Ray SC, et al. Residual human immunodeficiency virus type 1 viremia in some patients on antiretroviral therapy is dominated by a small number of invariant clones rarely found in circulating CD4+ T cells. Journal of Virology. 80: 6441-57. PMID 16775332 DOI: 10.1128/Jvi.00591-06 |
0.397 |
|
| 2006 |
Bailey JR, Lassen KG, Yang HC, Quinn TC, Ray SC, Blankson JN, Siliciano RF. Neutralizing antibodies do not mediate suppression of human immunodeficiency virus type 1 in elite suppressors or selection of plasma virus variants in patients on highly active antiretroviral therapy. Journal of Virology. 80: 4758-70. PMID 16641269 DOI: 10.1128/Jvi.80.10.4758-4770.2006 |
0.446 |
|
| 2005 |
Netski DM, Mosbruger T, Depla E, Maertens G, Ray SC, Hamilton RG, Roundtree S, Thomas DL, McKeating J, Cox A. Humoral immune response in acute hepatitis C virus infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 41: 667-75. PMID 16080089 DOI: 10.1086/432478 |
0.539 |
|
| 2005 |
Cox AL, Mosbruger T, Lauer GM, Pardoll D, Thomas DL, Ray SC. Comprehensive analyses of CD8+ T cell responses during longitudinal study of acute human hepatitis C. Hepatology (Baltimore, Md.). 42: 104-12. PMID 15962289 DOI: 10.1002/Hep.20749 |
0.54 |
|
| 2005 |
Ray SC, Fanning L, Wang XH, Netski DM, Kenny-Walsh E, Thomas DL. Divergent and convergent evolution after a common-source outbreak of hepatitis C virus. The Journal of Experimental Medicine. 201: 1753-9. PMID 15939791 DOI: 10.1084/Jem.20050122 |
0.569 |
|
| 2005 |
Cox AL, Mosbruger T, Mao Q, Liu Z, Wang XH, Yang HC, Sidney J, Sette A, Pardoll D, Thomas DL, Ray SC. Cellular immune selection with hepatitis C virus persistence in humans. The Journal of Experimental Medicine. 201: 1741-52. PMID 15939790 DOI: 10.1084/Jem.20050121 |
0.542 |
|
| 2005 |
Cox AL, Netski DM, Mosbruger T, Sherman SG, Strathdee S, Ompad D, Vlahov D, Chien D, Shyamala V, Ray SC, Thomas DL. Prospective evaluation of community-acquired acute-phase hepatitis C virus infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 40: 951-8. PMID 15824985 DOI: 10.1086/428578 |
0.57 |
|
| 2005 |
Monie D, Simmons RP, Nettles RE, Kieffer TL, Zhou Y, Zhang H, Karmon S, Ingersoll R, Chadwick K, Zhang H, Margolick JB, Quinn TC, Ray SC, Wind-Rotolo M, Miller M, et al. A novel assay allows genotyping of the latent reservoir for human immunodeficiency virus type 1 in the resting CD4+ T cells of viremic patients. Journal of Virology. 79: 5185-202. PMID 15795302 DOI: 10.1128/Jvi.79.8.5185-5202.2005 |
0.414 |
|
| 2005 |
Laeyendecker O, Zhang GW, Quinn TC, Garten R, Ray SC, Lai S, Liu W, Chen J, Yu XF. Molecular epidemiology of HIV-1 subtypes in southern China. Journal of Acquired Immune Deficiency Syndromes (1999). 38: 356-62. PMID 15735457 |
0.338 |
|
| 2005 |
Nettles RE, Kieffer TL, Kwon P, Monie D, Han Y, Parsons T, Cofrancesco J, Gallant JE, Quinn TC, Jackson B, Flexner C, Carson K, Ray S, Persaud D, Siliciano RF. Intermittent HIV-1 viremia (Blips) and drug resistance in patients receiving HAART. Jama. 293: 817-29. PMID 15713771 DOI: 10.1001/Jama.293.7.817 |
0.392 |
|
| 2005 |
Li K, Foy E, Ferreon JC, Nakamura M, Ferreon AC, Ikeda M, Ray SC, Gale M, Lemon SM. Immune evasion by hepatitis C virus NS3/4A protease-mediated cleavage of the Toll-like receptor 3 adaptor protein TRIF. Proceedings of the National Academy of Sciences of the United States of America. 102: 2992-7. PMID 15710891 DOI: 10.1073/Pnas.0408824102 |
0.442 |
|
| 2005 |
Kieffer TL, Kwon P, Nettles RE, Han Y, Ray SC, Siliciano RF. G-->A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4+ T cells in vivo. Journal of Virology. 79: 1975-80. PMID 15650227 DOI: 10.1128/Jvi.79.3.1975-1980.2005 |
0.405 |
|
| 2004 |
Liu Z, Netski DM, Mao Q, Laeyendecker O, Ticehurst JR, Wang XH, Thomas DL, Ray SC. Accurate representation of the hepatitis C virus quasispecies in 5.2-kilobase amplicons. Journal of Clinical Microbiology. 42: 4223-9. PMID 15365015 DOI: 10.1128/Jcm.42.9.4223-4229.2004 |
0.566 |
|
| 2004 |
Kieffer TL, Finucane MM, Nettles RE, Quinn TC, Broman KW, Ray SC, Persaud D, Siliciano RF. Genotypic analysis of HIV-1 drug resistance at the limit of detection: virus production without evolution in treated adults with undetectable HIV loads. The Journal of Infectious Diseases. 189: 1452-65. PMID 15073683 DOI: 10.1086/382488 |
0.434 |
|
| 2004 |
Lanford RE, Guerra B, Chavez D, Bigger C, Brasky KM, Wang XH, Ray SC, Thomas DL. Cross-genotype immunity to hepatitis C virus. Journal of Virology. 78: 1575-81. PMID 14722311 DOI: 10.1128/Jvi.78.3.1575-1581.2004 |
0.546 |
|
| 2004 |
Persaud D, Siberry GK, Ahonkhai A, Kajdas J, Monie D, Hutton N, Watson DC, Quinn TC, Ray SC, Siliciano RF. Continued production of drug-sensitive human immunodeficiency virus type 1 in children on combination antiretroviral therapy who have undetectable viral loads. Journal of Virology. 78: 968-79. PMID 14694128 DOI: 10.1128/Jvi.78.2.968-979.2004 |
0.429 |
|
| 2003 |
Wilbe K, Salminen M, Laukkanen T, McCutchan F, Ray SC, Albert J, Leitner T. Characterization of novel recombinant HIV-1 genomes using the branching index. Virology. 316: 116-25. PMID 14599796 DOI: 10.1016/J.Virol.2003.08.004 |
0.386 |
|
| 2002 |
Ruff CT, Ray SC, Kwon P, Zinn R, Pendleton A, Hutton N, Ashworth R, Gange S, Quinn TC, Siliciano RF, Persaud D. Persistence of wild-type virus and lack of temporal structure in the latent reservoir for human immunodeficiency virus type 1 in pediatric patients with extensive antiretroviral exposure. Journal of Virology. 76: 9481-92. PMID 12186930 DOI: 10.1128/Jvi.76.18.9481-9492.2002 |
0.463 |
|
| 2002 |
Mehta SH, Cox A, Hoover DR, Wang XH, Mao Q, Ray S, Strathdee SA, Vlahov D, Thomas DL. Protection against persistence of hepatitis C. Lancet (London, England). 359: 1478-83. PMID 11988247 DOI: 10.1016/S0140-6736(02)08435-0 |
0.546 |
|
| 2002 |
Sulkowski MS, Ray SC, Thomas DL. Needlestick transmission of hepatitis C. Jama. 287: 2406-13. PMID 11988061 DOI: 10.1001/Jama.287.18.2406 |
0.565 |
|
| 2001 |
Thimme R, Oldach D, Chang KM, Steiger C, Ray SC, Chisari FV. Determinants of viral clearance and persistence during acute hepatitis C virus infection Journal of Experimental Medicine. 194: 1395-1406. PMID 11714747 DOI: 10.1084/Jem.194.10.1395 |
0.556 |
|
| 2001 |
Wilson LE, Umemura T, Astemborski J, Ray SC, Alter HJ, Strathdee SA, Vlahov D, Thomas DL. Dynamics of SEN virus infection among injection drug users. The Journal of Infectious Diseases. 184: 1315-9. PMID 11679921 DOI: 10.1086/324001 |
0.384 |
|
| 2001 |
Hermankova M, Ray SC, Ruff C, Powell-Davis M, Ingersoll R, D'Aquila RT, Quinn TC, Siliciano JD, Siliciano RF, Persaud D. HIV-1 drug resistance profiles in children and adults with viral load of <50 copies/ml receiving combination therapy. Jama. 286: 196-207. PMID 11448283 DOI: 10.1001/Jama.286.2.196 |
0.421 |
|
| 2001 |
Mao Q, Ray SC, Laeyendecker O, Ticehurst JR, Strathdee SA, Vlahov D, Thomas DL. Human immunodeficiency virus seroconversion and evolution of the hepatitis C virus quasispecies Journal of Virology. 75: 3259-3267. PMID 11238852 DOI: 10.1128/Jvi.75.7.3259-3267.2001 |
0.59 |
|
| 2000 |
Nousbaum J, Polyak SJ, Ray SC, Sullivan DG, Larson AM, Carithers RL, Gretch DR. Prospective characterization of full-length hepatitis C virus NS5A quasispecies during induction and combination antiviral therapy. Journal of Virology. 74: 9028-38. PMID 10982347 DOI: 10.1128/Jvi.74.19.9028-9038.2000 |
0.526 |
|
| 2000 |
Ray SC, Arthur RR, Carella A, Bukh J, Thomas DL. Genetic epidemiology of hepatitis C virus throughout egypt. The Journal of Infectious Diseases. 182: 698-707. PMID 10950762 DOI: 10.1086/315786 |
0.508 |
|
| 2000 |
Persaud D, Pierson T, Ruff C, Finzi D, Chadwick KR, Margolick JB, Ruff A, Hutton N, Ray S, Siliciano RF. A stable latent reservoir for HIV-1 in resting CD4(+) T lymphocytes in infected children. The Journal of Clinical Investigation. 105: 995-1003. PMID 10749578 DOI: 10.1172/Jci9006 |
0.422 |
|
| 2000 |
Thomas DL, Astemborski J, Vlahov D, Strathdee SA, Ray SC, Nelson KE, Galai N, Nolt KR, Laeyendecker O, Todd JA. Determinants of the quantity of hepatitis C virus RNA Journal of Infectious Diseases. 181: 844-851. PMID 10720503 DOI: 10.1086/315314 |
0.523 |
|
| 2000 |
Ray SC, Mao Q, Lanford RE, Bassett S, Laeyendecker O, Wang YM, Thomas DL. Hypervariable region 1 sequence stability during hepatitis C virus replication in chimpanzees Journal of Virology. 74: 3058-3066. PMID 10708420 DOI: 10.1128/Jvi.74.7.3058-3066.2000 |
0.514 |
|
| 2000 |
Ray SC, Quinn TC. Sex and the genetic diversity of HIV-1. Nature Medicine. 6: 23-25. PMID 10613817 DOI: 10.1038/71487 |
0.372 |
|
| 1999 |
Ray SC, Wang YM, Laeyendecker O, Ticehurst JR, Villano SA, Thomas DL. Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: Hypervariable region 1 as a decoy Journal of Virology. 73: 2938-2946. PMID 10074143 DOI: 10.1128/Jvi.73.4.2938-2946.1999 |
0.499 |
|
| 1999 |
Dibbern DA, Ray SC. Recrudescence of treated neurosyphilis in a patient with human immunodeficiency virus. Mayo Clinic Proceedings. 74: 53-6. PMID 9987533 DOI: 10.4065/74.1.53 |
0.383 |
|
| 1999 |
Echavarria MS, Ray SC, Ambinder R, Dumler JS, Charache P. PCR detection of adenovirus in a bone marrow transplant recipient: Hemorrhagic cystitis as a presenting manifestation of disseminated disease Journal of Clinical Microbiology. 37: 686-689. PMID 9986832 DOI: 10.1128/Jcm.37.3.686-689.1999 |
0.376 |
|
| 1999 |
Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC. Full-Length Human Immunodeficiency Virus Type 1 Genomes from Subtype C-Infected Seroconverters in India, with Evidence of Intersubtype Recombination Journal of Virology. 73: 152-160. PMID 9847317 DOI: 10.1128/Jvi.73.1.152-160.1999 |
0.452 |
|
| 1998 |
Wang YM, Ray SC, Laeyendecker O, Ticehurst JR, Thomas DL. Assessment of hepatitis C virus sequence complexity by electrophoretic mobilities of both single- and double-stranded DNAs Journal of Clinical Microbiology. 36: 2982-2989. PMID 9738054 DOI: 10.1128/Jcm.36.10.2982-2989.1998 |
0.455 |
|
| 1998 |
Ray SC, Lubaki N, Dhruva BR, Siliciano RF, Bollinger RC. Autologous strain-specific cytolytic T lymphocyte responses directed against human immunodeficiency virus type 1 Env Aids Research and Human Retroviruses. 14: 3-13. PMID 9453246 DOI: 10.1089/Aid.1998.14.3 |
0.405 |
|
| 1997 |
Lubaki NM, Ray SC, Dhruva B, Quinn TC, Siliciano RF, Bollinger RC. Characterization of a polyclonal cytolytic T lymphocyte response to human immunodeficiency virus in persons without clinical progression Journal of Infectious Diseases. 175: 1360-1367. PMID 9180175 DOI: 10.1086/516468 |
0.413 |
|
| 1996 |
Schwartz DH, Viscidi R, Laeyendecker O, Song H, Ray SC, Michael N. Predominance of defective proviral sequences in an HIV + long-term non-progressor. Immunology Letters. 51: 3-6. PMID 8811337 DOI: 10.1016/0165-2478(96)02547-3 |
0.411 |
|
| 1995 |
Markham RB, Yu X, Farzadegan H, Ray SC, Vlahov D. Human immunodeficiency virus type 1 env and p17gag sequence variation in polymerase chain reaction-positive, seronegative injection drug users. The Journal of Infectious Diseases. 171: 797-804. PMID 7706805 DOI: 10.1093/Infdis/171.4.797 |
0.445 |
|
| 1995 |
Strunnikova N, Ray SC, Livingston RA, Rubalcaba E, Viscidi RP. Convergent evolution within the V3 loop domain of human immunodeficiency virus type 1 in association with disease progression. Journal of Virology. 69: 7548-7558. PMID 7494261 DOI: 10.1128/Jvi.69.12.7548-7558.1995 |
0.431 |
|
| 1994 |
Baskar PV, Ray SC, Rao R, Quinn TC, Hildreth JEK, Bollinger RC. Presence in India of HIV type 1 similar to North American strains Aids Research and Human Retroviruses. 10: 1039-1041. PMID 7811535 DOI: 10.1089/Aid.1994.10.1039 |
0.375 |
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