Shin Ishii, Ph.D. - Publications

Affiliations: 
Graduate School of Informatics Kyoto University, Kyōto-shi, Kyōto-fu, Japan 
Area:
Computational neuroscience

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Urakubo H, Bullmann T, Kubota Y, Oba S, Ishii S. UNI-EM: An Environment for Deep Neural Network-Based Automated Segmentation of Neuronal Electron Microscopic Images. Scientific Reports. 9: 19413. PMID 31857624 DOI: 10.1038/s41598-019-55431-0  0.36
2019 Fujii M, Murakami Y, Karasawa Y, Sumitomo Y, Fujita S, Koyama M, Uda S, Kubota H, Inoue H, Konishi K, Oba S, Ishii S, Kuroda S. Logical design of oral glucose ingestion pattern minimizing blood glucose in humans. Npj Systems Biology and Applications. 5: 31. PMID 31508240 DOI: 10.1038/s41540-019-0108-1  0.36
2019 Liang Z, Oba S, Ishii S. An unsupervised EEG decoding system for human emotion recognition. Neural Networks : the Official Journal of the International Neural Network Society. 116: 257-268. PMID 31125912 DOI: 10.1016/j.neunet.2019.04.003  0.36
2018 Miyato T, Maeda SI, Ishii S, Koyama M. Virtual Adversarial Training: A Regularization Method for Supervised and Semi-Supervised Learning. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 30040630 DOI: 10.1109/TPAMI.2018.2858821  0.36
2018 Liang Z, Hamada Y, Oba S, Ishii S. Characterization of electroencephalography signals for estimating saliency features in videos. Neural Networks : the Official Journal of the International Neural Network Society. 105: 52-64. PMID 29763744 DOI: 10.1016/j.neunet.2018.04.013  0.36
2018 Yamada T, Nishiyama M, Oba S, Jimbo HC, Ikeda K, Ishii S, Hong K, Sakumura Y. Computational Methods for Estimating Molecular System from Membrane Potential Recordings in Nerve Growth Cone. Scientific Reports. 8: 4559. PMID 29540815 DOI: 10.1038/s41598-018-22506-3  0.36
2017 Murakami Y, Koyama M, Oba S, Kuroda S, Ishii S. Model-based control of the temporal patterns of intracellular signaling in silico. Biophysics and Physicobiology. 14: 29-40. PMID 28275530 DOI: 10.2142/biophysico.14.0_29  0.36
2017 Meshgi K, Maeda SI, Oba S, Ishii S. Constructing a meta-tracker using Dropout to imitate the behavior of an arbitrary black-box tracker. Neural Networks : the Official Journal of the International Neural Network Society. 87: 132-148. PMID 28119122 DOI: 10.1016/j.neunet.2016.12.009  0.36
2016 Oba S, Nakae K, Ikegaya Y, Aki S, Yoshimoto J, Ishii S. Empirical Bayesian significance measure of neuronal spike response. Bmc Neuroscience. 17: 27. PMID 27209433 DOI: 10.1186/s12868-016-0255-x  0.36
2015 Asada A, Ujita S, Nakayama R, Oba S, Ishii S, Matsuki N, Ikegaya Y. Subtle modulation of ongoing calcium dynamics in astrocytic microdomains by sensory inputs. Physiological Reports. 3. PMID 26438730 DOI: 10.14814/phy2.12454  0.36
2015 Skibbe H, Reisert M, Maeda S, Koyama M, Oba S, Ito K, Ishii S. Efficient Monte Carlo image analysis for the location of vascular entity. Ieee Transactions On Medical Imaging. 34: 628-43. PMID 25347876 DOI: 10.1109/TMI.2014.2364404  0.36
2014 Nakae K, Ikegaya Y, Ishikawa T, Oba S, Urakubo H, Koyama M, Ishii S. A statistical method of identifying interactions in neuron-glia systems based on functional multicell Ca2+ imaging. Plos Computational Biology. 10: e1003949. PMID 25393874 DOI: 10.1371/journal.pcbi.1003949  0.36
2014 Morioka H, Kanemura A, Morimoto S, Yoshioka T, Oba S, Kawanabe M, Ishii S. Decoding spatial attention by using cortical currents estimated from electroencephalography with near-infrared spectroscopy prior information. Neuroimage. 90: 128-39. PMID 24374077 DOI: 10.1016/j.neuroimage.2013.12.035  0.36
2012 Ueno T, Maeda S, Ishii S. Asymptotic analysis of value prediction by well-specified and misspecified models. Neural Networks : the Official Journal of the International Neural Network Society. 31: 88-92. PMID 22498361 DOI: 10.1016/j.neunet.2012.03.004  0.36
2011 Takahashi N, Oba S, Yukinawa N, Ujita S, Mizunuma M, Matsuki N, Ishii S, Ikegaya Y. High-speed multineuron calcium imaging using Nipkow-type confocal microscopy. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 2.14. PMID 21971847 DOI: 10.1002/0471142301.ns0214s57  0.36
2011 Kim W, Matsui T, Yamao M, Ishibashi M, Tamada K, Takumi T, Kohno K, Oba S, Ishii S, Sakumura Y, Bessho Y. The period of the somite segmentation clock is sensitive to Notch activity. Molecular Biology of the Cell. 22: 3541-9. PMID 21795391 DOI: 10.1091/mbc.E11-02-0139  0.36
2011 Nishiyama M, Togashi K, von Schimmelmann MJ, Lim CS, Maeda S, Yamashita N, Goshima Y, Ishii S, Hong K. Semaphorin 3A induces CaV2.3 channel-dependent conversion of axons to dendrites. Nature Cell Biology. 13: 676-85. PMID 21602796 DOI: 10.1038/ncb2255  0.36
2010 Kanemura A, Maeda S, Ishii S. Sparse bayesian learning of filters for efficient image expansion. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 19: 1480-90. PMID 20215080 DOI: 10.1109/TIP.2010.2043010  0.36
2009 Suzuki I, Takenouchi T, Ohira M, Oba S, Ishii S. Robust model selection for classification of microarrays. Cancer Informatics. 7: 141-57. PMID 19718450  0.36
2009 Maeda S, Ishii S. Learning a multi-dimensional companding function for lossy source coding. Neural Networks : the Official Journal of the International Neural Network Society. 22: 998-1010. PMID 19556103 DOI: 10.1016/j.neunet.2009.06.001  0.36
2009 Yukinawa N, Oba S, Kato K, Ishii S. Optimal aggregation of binary classifiers for multiclass cancer diagnosis using gene expression profiles. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 333-43. PMID 19407356 DOI: 10.1109/TCBB.2007.70239  0.36
2009 Kanemura A, Maeda S, Ishii S. Superresolution with compound Markov random fields via the variational EM algorithm. Neural Networks : the Official Journal of the International Neural Network Society. 22: 1025-34. PMID 19157777 DOI: 10.1016/j.neunet.2008.12.005  0.36
2009 Shirahata M, Oba S, Iwao-Koizumi K, Saito S, Ueno N, Oda M, Hashimoto N, Ishii S, Takahashi JA, Kato K. Using gene expression profiling to identify a prognostic molecular spectrum in gliomas. Cancer Science. 100: 165-72. PMID 19038000 DOI: 10.1111/j.1349-7006.2008.01002.x  0.36
2006 Oba S, Ishii S. Semi-supervised discovery of differential genes. Bmc Bioinformatics. 7: 414. PMID 16981994 DOI: 10.1186/1471-2105-7-414  0.36
2006 Yukinawa N, Oba S, Kato K, Taniguchi K, Iwao-Koizumi K, Tamaki Y, Noguchi S, Ishii S. A multi-class predictor based on a probabilistic model: application to gene expression profiling-based diagnosis of thyroid tumors. Bmc Genomics. 7: 190. PMID 16872506 DOI: 10.1186/1471-2164-7-190  0.36
2006 Motoori M, Takemasa I, Doki Y, Saito S, Miyata H, Takiguchi S, Fujiwara Y, Yasuda T, Yano M, Kurokawa Y, Komori T, Yamasaki M, Ueno N, Oba S, Ishii S, et al. Prediction of peritoneal metastasis in advanced gastric cancer by gene expression profiling of the primary site. European Journal of Cancer (Oxford, England : 1990). 42: 1897-903. PMID 16831544 DOI: 10.1016/j.ejca.2006.04.007  0.36
2005 Ohira M, Oba S, Nakamura Y, Hirata T, Ishii S, Nakagawara A. A review of DNA microarray analysis of human neuroblastomas. Cancer Letters. 228: 5-11. PMID 15936139 DOI: 10.1016/j.canlet.2005.01.054  0.36
2005 Ohira M, Oba S, Nakamura Y, Isogai E, Kaneko S, Nakagawa A, Hirata T, Kubo H, Goto T, Yamada S, Yoshida Y, Fuchioka M, Ishii S, Nakagawara A. Expression profiling using a tumor-specific cDNA microarray predicts the prognosis of intermediate risk neuroblastomas. Cancer Cell. 7: 337-50. PMID 15837623 DOI: 10.1016/j.ccr.2005.03.019  0.36
2005 Kita-Matsuo H, Yukinawa N, Matoba R, Saito S, Oba S, Ishii S, Kato K. Adaptor-tagged competitive polymerase chain reaction: amplification bias and quantified gene expression levels. Analytical Biochemistry. 339: 15-28. PMID 15766705 DOI: 10.1016/j.ab.2004.11.014  0.36
2005 Motoori M, Takemasa I, Yano M, Saito S, Miyata H, Takiguchi S, Fujiwara Y, Yasuda T, Doki Y, Kurokawa Y, Ueno N, Oba S, Ishii S, Monden M, Kato K. Prediction of recurrence in advanced gastric cancer patients after curative resection by gene expression profiling. International Journal of Cancer. Journal International Du Cancer. 114: 963-8. PMID 15645432 DOI: 10.1002/ijc.20808  0.36
2005 Maeda S, Song WJ, Ishii S. Nonlinear and noisy extension of independent component analysis: theory and its application to a pitch sensation model. Neural Computation. 17: 115-44. PMID 15563750 DOI: 10.1162/0899766052530866  0.36
2004 Kurokawa Y, Matoba R, Takemasa I, Nagano H, Dono K, Nakamori S, Umeshita K, Sakon M, Ueno N, Oba S, Ishii S, Kato K, Monden M. Molecular-based prediction of early recurrence in hepatocellular carcinoma. Journal of Hepatology. 41: 284-91. PMID 15288478 DOI: 10.1016/j.jhep.2004.04.031  0.36
2003 Kurokawa Y, Matoba R, Takemasa I, Nakamori S, Tsujie M, Nagano H, Dono K, Umeshita K, Sakon M, Ueno N, Kita H, Oba S, Ishii S, Kato K, Monden M. Molecular features of non-B, non-C hepatocellular carcinoma: a PCR-array gene expression profiling study. Journal of Hepatology. 39: 1004-12. PMID 14642619  0.36
2003 Oba S, Sato MA, Takemasa I, Monden M, Matsubara K, Ishii S. A Bayesian missing value estimation method for gene expression profile data. Bioinformatics (Oxford, England). 19: 2088-96. PMID 14594714  0.36
2003 Muro S, Takemasa I, Oba S, Matoba R, Ueno N, Maruyama C, Yamashita R, Sekimoto M, Yamamoto H, Nakamori S, Monden M, Ishii S, Kato K. Identification of expressed genes linked to malignancy of human colorectal carcinoma by parametric clustering of quantitative expression data. Genome Biology. 4: R21. PMID 12620106  0.36
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