| Year |
Citation |
Score |
| 2023 |
Graber JH, Hoskinson D, Liu H, Kaczmarek Michaels K, Benson PS, Maki NJ, Wilson CL, McGrath C, Puleo F, Pearson E, Kuehner JN, Moore C. Mutations in yeast Pcf11, a conserved protein essential for mRNA 3' end processing and transcription termination, elicit the Environmental Stress Response. Genetics. PMID 37967370 DOI: 10.1093/genetics/iyad199 |
0.346 |
|
| 2022 |
Rochester JD, Min H, Gajjar GA, Sharp CS, Maki NJ, Rollins JA, Keiper BD, Graber JH, Updike DL. GLH-1/Vasa represses neuropeptide expression and drives spermiogenesis in the C. elegans germline. Developmental Biology. 492: 200-211. PMID 36273621 DOI: 10.1016/j.ydbio.2022.10.003 |
0.333 |
|
| 2020 |
Gans I, Hartig EI, Zhu S, Tilden AR, Hutchins LN, Maki NJ, Graber JH, Coffman JA. Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity. Scientific Reports. 10: 11415. PMID 32651405 DOI: 10.1038/S41598-020-68040-Z |
0.349 |
|
| 2020 |
Gans IM, Hartig EI, Tilden AR, Graber JH, Coffman J. SUN-LB40 Chronic Cortisol Works Through the Transcription Factor KLF9 to Deregulate Immune Response and Metabolism Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.2322 |
0.336 |
|
| 2019 |
Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Liu R, Stafford G, Chuang JH, Airhart SD, Karuturi RKM, George J, et al. Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines. Bmc Medical Genomics. 12: 92. PMID 31262303 DOI: 10.1186/S12920-019-0551-2 |
0.367 |
|
| 2019 |
Skelly DA, Raghupathy N, Robledo RF, Graber JH, Chesler EJ. Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples. Genetics. PMID 31113812 DOI: 10.1534/Genetics.118.301865 |
0.337 |
|
| 2019 |
Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Stafford G, Chuang JH, Airhart SD, Karuturi RK, George J, Bult CJ. Abstract 1075: Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): Challenges and guidelines Cancer Research. 79: 1075-1075. DOI: 10.1158/1538-7445.Am2019-1075 |
0.359 |
|
| 2018 |
Nébor D, Graber JH, Ciciotte SL, Robledo RF, Papoin J, Hartman E, Gillinder KR, Perkins AC, Bieker JJ, Blanc L, Peters LL. Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis. Scientific Reports. 8: 12793. PMID 30143664 DOI: 10.1038/S41598-018-30839-2 |
0.305 |
|
| 2017 |
Chow KH, Park HJ, George J, Yamamoto K, Gallup AD, Graber JH, Chen Y, Jiang W, Steindler D, Neilson EG, Kim BYS, Yun K. S100A4 is a biomarker and regulator of glioma stem cells that is critical for mesenchymal transition in glioblastoma. Cancer Research. PMID 28807938 DOI: 10.1158/0008-5472.Can-17-1294 |
0.305 |
|
| 2017 |
Gillinder KR, Ilsley MD, Nébor D, Sachidanandam R, Lajoie M, Magor GW, Tallack MR, Bailey T, Landsberg MJ, Mackay JP, Parker MW, Miles LA, Graber JH, Peters LL, Bieker JJ, et al. Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability. Nucleic Acids Research. 45: 1130-1143. PMID 28180284 DOI: 10.1093/Nar/Gkw1014 |
0.308 |
|
| 2016 |
Grozdanov PN, Amatullah A, Graber JH, MacDonald CC. TauCstF-64 Mediates Correct mRNA Polyadenylation and Splicing of Activator and Repressor Isoforms of the Cyclic AMP-Responsive Element Modulator (CREM) in Mouse Testis. Biology of Reproduction. 94: 34. PMID 26700942 DOI: 10.1095/Biolreprod.115.134684 |
0.436 |
|
| 2016 |
Nebor D, Gillinder KR, Robledo RF, Graber JH, Philip V, Ilsley M, Bieker JJ, Perkins A, Peters LL. Identifying Novel Modifiers of Embryonic Globin Expression By Combining Chipseq, Rnaseq and eQTL Mapping in the Adult Nan Mouse Model Blood. 128: 398-398. DOI: 10.1182/Blood.V128.22.398.398 |
0.422 |
|
| 2016 |
Grozdanov PN, Amatullah A, Graber JH, MacDonald CC. TauCstF-64 mediates correct mRNA polyadenylation and splicing of activator and repressor isoforms of the cyclic AMP-responsive element modulator (CREM) in mouse testis Biology of Reproduction. 94. DOI: 10.1095/biolreprod.115.134684 |
0.335 |
|
| 2015 |
Graber JH, Keck JG, Airhart SD, Bult CJ, Liu ET. Abstract P6-06-02: Molecular characterization of a patient-derived xenograft (PDX) resource for triple negative breast cancer Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-P6-06-02 |
0.324 |
|
| 2014 |
Munger SC, Raghupathy N, Choi K, Simons AK, Gatti DM, Hinerfeld DA, Svenson KL, Keller MP, Attie AD, Hibbs MA, Graber JH, Chesler EJ, Churchill GA. RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations. Genetics. 198: 59-73. PMID 25236449 DOI: 10.1534/Genetics.114.165886 |
0.407 |
|
| 2013 |
Graber JH, Nazeer FI, Yeh PC, Kuehner JN, Borikar S, Hoskinson D, Moore CL. DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast. Genome Research. 23: 1690-703. PMID 23788651 DOI: 10.1101/gr.144964.112 |
0.399 |
|
| 2010 |
Billings T, Sargent EE, Szatkiewicz JP, Leahy N, Kwak IY, Bektassova N, Walker M, Hassold T, Graber JH, Broman KW, Petkov PM. Patterns of recombination activity on mouse chromosome 11 revealed by high resolution mapping. Plos One. 5: e15340. PMID 21170346 DOI: 10.1371/Journal.Pone.0015340 |
0.337 |
|
| 2010 |
Peaston AE, Graber JH, Knowles BB, de Vries WN. Interrogating the transcriptome of oocytes and preimplantation embryos. Methods in Enzymology. 477: 481-510. PMID 20699156 DOI: 10.1016/S0076-6879(10)77024-5 |
0.377 |
|
| 2009 |
Singh P, Alley TL, Wright SM, Kamdar S, Schott W, Wilpan RY, Mills KD, Graber JH. Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes. Cancer Research. 69: 9422-30. PMID 19934316 DOI: 10.1158/0008-5472.Can-09-2236 |
0.71 |
|
| 2009 |
Salisbury J, Hutchison KW, Wigglesworth K, Eppig JJ, Graber JH. Probe-level analysis of expression microarrays characterizes isoform-specific degradation during mouse oocyte maturation. Plos One. 4: e7479. PMID 19834616 DOI: 10.1371/Journal.Pone.0007479 |
0.445 |
|
| 2009 |
Yang H, Ding Y, Hutchins LN, Szatkiewicz J, Bell TA, Paigen BJ, Graber JH, de Villena FPM, Churchill GA. A customized and versatile high-density genotyping array for the mouse Nature Methods. 6: 663-666. PMID 19668205 DOI: 10.1038/Nmeth.1359 |
0.342 |
|
| 2008 |
de Vries WN, Evsikov AV, Brogan LJ, Anderson CP, Graber JH, Knowles BB, Solter D. Reprogramming and differentiation in mammals: motifs and mechanisms. Cold Spring Harbor Symposia On Quantitative Biology. 73: 33-8. PMID 19022741 DOI: 10.1101/Sqb.2008.73.016 |
0.372 |
|
| 2008 |
Hutchins LN, Murphy SM, Singh P, Graber JH. Position-dependent motif characterization using non-negative matrix factorization. Bioinformatics (Oxford, England). 24: 2684-90. PMID 18852176 DOI: 10.1093/Bioinformatics/Btn526 |
0.694 |
|
| 2008 |
Paigen K, Szatkiewicz JP, Sawyer K, Leahy N, Parvanov ED, Ng SH, Graber JH, Broman KW, Petkov PM. The recombinational anatomy of a mouse chromosome. Plos Genetics. 4: e1000119. PMID 18617997 DOI: 10.1371/Journal.Pgen.1000119 |
0.338 |
|
| 2007 |
Graber JH, Salisbury J, Hutchins LN, Blumenthal T. C. elegans sequences that control trans-splicing and operon pre-mRNA processing. Rna (New York, N.Y.). 13: 1409-26. PMID 17630324 DOI: 10.1261/Rna.596707 |
0.5 |
|
| 2007 |
Liu D, Brockman JM, Dass B, Hutchins LN, Singh P, McCarrey JR, MacDonald CC, Graber JH. Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis. Nucleic Acids Research. 35: 234-46. PMID 17158511 DOI: 10.1093/Nar/Gkl919 |
0.704 |
|
| 2006 |
Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P, Eppig JJ, Solter D, Knowles BB. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Genes & Development. 20: 2713-27. PMID 17015433 DOI: 10.1101/Gad.1471006 |
0.692 |
|
| 2006 |
Graber JH, Churchill GA, Dipetrillo KJ, King BL, Petkov PM, Paigen K. Patterns and mechanisms of genome organization in the mouse. Journal of Experimental Zoology. Part a, Comparative Experimental Biology. 305: 683-8. PMID 16902958 DOI: 10.1002/Jez.A.322 |
0.342 |
|
| 2006 |
Salisbury J, Hutchison KW, Graber JH. A multispecies comparison of the metazoan 3'-processing downstream elements and the CstF-64 RNA recognition motif. Bmc Genomics. 7: 55. PMID 16542450 DOI: 10.1186/1471-2164-7-55 |
0.437 |
|
| 2006 |
Liu D, Graber JH. Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation. Bmc Bioinformatics. 7: 77. PMID 16503995 DOI: 10.1186/1471-2105-7-77 |
0.404 |
|
| 2005 |
Petkov PM, Graber JH, Churchill GA, DiPetrillo K, King BL, Paigen K. Evidence of a large-scale functional organization of mammalian chromosomes. Plos Genetics. 1: e33. PMID 16163395 DOI: 10.1371/Journal.Pgen.0010033 |
0.332 |
|
| 2005 |
Brockman JM, Singh P, Liu D, Quinlan S, Salisbury J, Graber JH. PACdb: PolyA Cleavage Site and 3'-UTR Database. Bioinformatics (Oxford, England). 21: 3691-3. PMID 16030070 DOI: 10.1093/Bioinformatics/Bti589 |
0.686 |
|
| 2004 |
Peaston AE, Evsikov AV, Graber JH, de Vries WN, Holbrook AE, Solter D, Knowles BB. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Developmental Cell. 7: 597-606. PMID 15469847 DOI: 10.1016/J.Devcel.2004.09.004 |
0.431 |
|
| 2003 |
Graber JH. Variations in yeast 3'-processing cis-elements correlate with transcript stability. Trends in Genetics : Tig. 19: 473-6. PMID 12957538 DOI: 10.1016/S0168-9525(03)00196-3 |
0.396 |
|
| 2003 |
Pervouchine DD, Graber JH, Kasif S. On the normalization of RNA equilibrium free energy to the length of the sequence. Nucleic Acids Research. 31: e49. PMID 12711694 DOI: 10.1093/Nar/Gng049 |
0.354 |
|
| 2002 |
Betley JN, Frith MC, Graber JH, Choo S, Deshler JO. A ubiquitous and conserved signal for RNA localization in chordates. Current Biology : Cb. 12: 1756-61. PMID 12401170 DOI: 10.1016/S0960-9822(02)01220-4 |
0.359 |
|
| 2002 |
Graber JH, McAllister GD, Smith TF. Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites. Nucleic Acids Research. 30: 1851-8. PMID 11937640 DOI: 10.1093/Nar/30.8.1851 |
0.448 |
|
| 1999 |
Graber JH, Cantor CR, Mohr SC, Smith TF. In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species. Proceedings of the National Academy of Sciences of the United States of America. 96: 14055-60. PMID 10570197 DOI: 10.1073/Pnas.96.24.14055 |
0.407 |
|
| 1999 |
Graber JH, Smith CL, Cantor CR. Differential sequencing with mass spectrometry. Genetic Analysis : Biomolecular Engineering. 14: 215-9. PMID 10084117 DOI: 10.1016/S1050-3862(98)00020-5 |
0.343 |
|
| 1999 |
Graber JH, Cantor CR, Mohr SC, Smith TF. Genomic detection of new yeast pre-mRNA 3'-end-processing signals. Nucleic Acids Research. 27: 888-94. PMID 9889288 DOI: 10.1093/Nar/27.3.888 |
0.503 |
|
| 1998 |
Smith C, Broude N, Mapel S, Graber J, Lewis M. Genomic differential display: A new approach for finding genes involved in schizophrenia Schizophrenia Research. 29: 136. DOI: 10.1016/S0920-9964(97)88645-8 |
0.324 |
|
| 1997 |
Cantor CR, Tang K, Graber JH, Maloney M, Fu DJ, Broude NE, Siddiqi F, Koester H, Smith CL. Dna Sequencing After the Human Genome Project Nucleosides and Nucleotides. 16: 591-598. DOI: 10.1080/07328319708002921 |
0.364 |
|
| 1997 |
Smith CL, Broude NE, Lukyanov SA, Graber JH, Sverdlov ED. Detecfion, quantitation and analysis of genomic differences in monozygotic twins Schizophrenia Research. 24: 55. DOI: 10.1016/S0920-9964(97)82158-5 |
0.323 |
|
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