| Year |
Citation |
Score |
| 2024 |
Wu K, Dhillon N, Bajor A, Abrahamsson S, Kamakaka RT. Yeast heterochromatin stably silences only weak regulatory elements by altering burst duration. Cell Reports. 43: 113983. PMID 38517895 DOI: 10.1016/j.celrep.2024.113983 |
0.42 |
|
| 2023 |
Wu K, Dhillon N, Bajor A, Abrahamson S, Kamakaka RT. Yeast Heterochromatin Only Stably Silences Weak Regulatory Elements by Altering Burst Duration. Biorxiv : the Preprint Server For Biology. PMID 37873261 DOI: 10.1101/2023.10.05.561072 |
0.836 |
|
| 2022 |
Van Bortle K, Marciano DP, Liu Q, Chou T, Lipchik AM, Gollapudi S, Geller BS, Monte E, Kamakaka RT, Snyder MP. A cancer-associated RNA polymerase III identity drives robust transcription and expression of snaR-A noncoding RNA. Nature Communications. 13: 3007. PMID 35637192 DOI: 10.1038/s41467-022-30323-6 |
0.45 |
|
| 2021 |
Wu K, Dhillon N, Du K, Kamakaka RT. Measuring the buffering capacity of gene silencing in . Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34857629 DOI: 10.1073/pnas.2111841118 |
0.837 |
|
| 2021 |
Endo Y, Takemori N, Nagy SK, Okimune KI, Kamakaka R, Onouchi H, Takasuka TE. De novo reconstitution of chromatin using wheat germ cell-free protein synthesis. Febs Open Bio. 11: 1552-1564. PMID 33960726 DOI: 10.1002/2211-5463.13178 |
0.519 |
|
| 2020 |
Dhillon N, Shelansky R, Townshend B, Jain M, Boeger H, Endy D, Kamakaka R. Permutational analysis of regulatory elements. Synthetic Biology (Oxford, England). 5: ysaa007. PMID 32775697 DOI: 10.1093/Synbio/Ysaa007 |
0.81 |
|
| 2019 |
Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, ... ... Kamakaka RT, et al. Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects. Molecular and Cellular Biology. PMID 30718362 DOI: 10.1128/Mcb.00432-18 |
0.798 |
|
| 2017 |
Peterson MR, Hamdani O, Kamakaka RT. Methods to Study the Atypical Roles of DNA Repair and SMC Proteins in Gene Silencing. Methods in Molecular Biology (Clifton, N.J.). 1515: 151-176. PMID 27797079 DOI: 10.1007/978-1-4939-6545-8_10 |
0.577 |
|
| 2015 |
Kirkland JG, Peterson MR, Still CD, Brueggeman L, Dhillon N, Kamakaka RT. Heterochromatin formation via recruitment of DNA repair proteins. Molecular Biology of the Cell. 26: 1395-410. PMID 25631822 DOI: 10.1091/Mbc.E14-09-1413 |
0.79 |
|
| 2014 |
Snider CE, Stephens AD, Kirkland JG, Hamdani O, Kamakaka RT, Bloom K. Dyskerin, tRNA genes, and condensin tether pericentric chromatin to the spindle axis in mitosis. The Journal of Cell Biology. 207: 189-99. PMID 25332162 DOI: 10.1083/Jcb.201405028 |
0.796 |
|
| 2013 |
Kirkland JG, Kamakaka RT. Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins. The Journal of Cell Biology. 201: 809-26. PMID 23733345 DOI: 10.1083/Jcb.201211105 |
0.806 |
|
| 2013 |
Kirkland JG, Raab JR, Kamakaka RT. TFIIIC bound DNA elements in nuclear organization and insulation. Biochimica Et Biophysica Acta. 1829: 418-24. PMID 23000638 DOI: 10.1016/J.Bbagrm.2012.09.006 |
0.81 |
|
| 2012 |
Raab JR, Chiu J, Zhu J, Katzman S, Kurukuti S, Wade PA, Haussler D, Kamakaka RT. Human tRNA genes function as chromatin insulators. The Embo Journal. 31: 330-50. PMID 22085927 DOI: 10.1038/Emboj.2011.406 |
0.779 |
|
| 2011 |
Ruben GJ, Kirkland JG, MacDonough T, Chen M, Dubey RN, Gartenberg MR, Kamakaka RT. Nucleoporin mediated nuclear positioning and silencing of HMR. Plos One. 6: e21923. PMID 21818277 DOI: 10.1371/Journal.Pone.0021923 |
0.77 |
|
| 2011 |
Radman-Livaja M, Ruben G, Weiner A, Friedman N, Kamakaka R, Rando OJ. Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization. The Embo Journal. 30: 1012-26. PMID 21336256 DOI: 10.1038/Emboj.2011.30 |
0.756 |
|
| 2010 |
Noma K, Kamakaka RT. The human Pol III transcriptome and gene information flow. Nature Structural & Molecular Biology. 17: 539-41. PMID 20442738 DOI: 10.1038/Nsmb0510-539 |
0.537 |
|
| 2010 |
Raab JR, Kamakaka RT. Insulators and promoters: closer than we think. Nature Reviews. Genetics. 11: 439-46. PMID 20442713 DOI: 10.1038/Nrg2765 |
0.785 |
|
| 2010 |
Kirkland JG, Kamakaka RT. tRNA insulator function: insight into inheritance of transcription states? Epigenetics. 5: 96-9. PMID 20168086 DOI: 10.4161/Epi.5.2.10775 |
0.818 |
|
| 2009 |
Dhillon N, Raab J, Guzzo J, Szyjka SJ, Gangadharan S, Aparicio OM, Andrews B, Kamakaka RT. DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator. The Embo Journal. 28: 2583-600. PMID 19629037 DOI: 10.1038/Emboj.2009.198 |
0.818 |
|
| 2009 |
Valenzuela L, Dhillon N, Kamakaka RT. Transcription independent insulation at TFIIIC-dependent insulators Genetics. 183: 131-148. PMID 19596900 DOI: 10.1534/Genetics.109.106203 |
0.838 |
|
| 2008 |
Vandre CL, Kamakaka RT, Rivier DH. The DNA end-binding protein Ku regulates silencing at the internal HML and HMR loci in Saccharomyces cerevisiae. Genetics. 180: 1407-18. PMID 18791224 DOI: 10.1534/Genetics.108.094490 |
0.59 |
|
| 2008 |
Haldar D, Kamakaka RT. Schizosaccharomyces pombe Hst4 functions in DNA damage response by regulating histone H3 K56 acetylation. Eukaryotic Cell. 7: 800-13. PMID 18344406 DOI: 10.1128/EC.00379-07 |
0.483 |
|
| 2008 |
Kamakaka RT, Kraus WL. In vitro transcription. Current Protocols in Cell Biology. Unit 11.6. PMID 18228311 DOI: 10.1002/0471143030.cb1106s02 |
0.488 |
|
| 2008 |
Valenzuela L, Dhillon N, Dubey RN, Gartenberg MR, Kamakaka RT. Long-range communication between the silencers of HMR Molecular and Cellular Biology. 28: 1924-1935. PMID 18195043 DOI: 10.1128/Mcb.01647-07 |
0.819 |
|
| 2006 |
Valenzuela L, Kamakaka RT. Chromatin insulators Annual Review of Genetics. 40: 107-138. PMID 16953792 DOI: 10.1146/annurev.genet.39.073003.113546 |
0.535 |
|
| 2006 |
Valencia-Burton M, Oki M, Johnson J, Seier TA, Kamakaka R, Haber JE. Different mating-type-regulated genes affect the DNA repair defects of saccharomyces RAD51, RAD52 and RAD55 mutants Genetics. 174: 41-55. PMID 16782999 DOI: 10.1534/Genetics.106.058685 |
0.503 |
|
| 2006 |
Haldar D, Kamakaka RT. tRNA genes as chromatin barriers. Nature Structural & Molecular Biology. 13: 192-3. PMID 16518388 DOI: 10.1038/nsmb0306-192 |
0.484 |
|
| 2006 |
Dhillon N, Oki M, Szyjka SJ, Aparicio OM, Kamakaka RT. H2A.Z functions to regulate progression through the cell cycle. Molecular and Cellular Biology. 26: 489-501. PMID 16382141 DOI: 10.1128/MCB.26.2.489-501.2006 |
0.809 |
|
| 2006 |
Valenzuela L, Gangadharan S, Kamakaka RT. Analyses of SUM1-1-mediated long-range repression Genetics. 172: 99-112. PMID 16272409 DOI: 10.1534/Genetics.105.050427 |
0.558 |
|
| 2005 |
Oki M, Kamakaka RT. Barrier function at HMR. Molecular Cell. 19: 707-16. PMID 16137626 DOI: 10.1016/j.molcel.2005.07.022 |
0.506 |
|
| 2005 |
Kamakaka RT, Biggins S. Histone variants: deviants? Genes & Development. 19: 295-310. PMID 15687254 DOI: 10.1101/Gad.1272805 |
0.503 |
|
| 2004 |
Gangadharan S, Ghidelli S, Kamakaka RT. Purification of Sir2 proteins from yeast. Methods in Enzymology. 377: 234-54. PMID 14979029 DOI: 10.1016/S0076-6879(03)77014-1 |
0.406 |
|
| 2004 |
Oki M, Valenzuela L, Chiba T, Ito T, Kamakaka RT. Barrier Proteins Remodel and Modify Chromatin to Restrict Silenced Domains Molecular and Cellular Biology. 24: 1956-1967. PMID 14966276 DOI: 10.1128/Mcb.24.5.1956-1967.2004 |
0.579 |
|
| 2002 |
Kamakaka RT. Chromatin: a connection between loops and barriers? Current Biology : Cb. 12: R535-7. PMID 12176379 |
0.31 |
|
| 2002 |
Oki M, Kamakaka RT. Blockers and barriers to transcription: competing activities? Current Opinion in Cell Biology. 14: 299-304. PMID 12067651 |
0.476 |
|
| 2002 |
Donze D, Kamakaka RT. Braking the silence: how heterochromatic gene repression is stopped in its tracks. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 24: 344-9. PMID 11948620 DOI: 10.1002/bies.10072 |
0.53 |
|
| 2002 |
Dhillon N, Kamakaka RT. Breaking through to the other side: silencers and barriers. Current Opinion in Genetics & Development. 12: 188-92. PMID 11893492 |
0.824 |
|
| 2001 |
Ghidelli S, Donze D, Dhillon N, Kamakaka RT. Sir2p exists in two nucleosome-binding complexes with distinct deacetylase activities. The Embo Journal. 20: 4522-35. PMID 11500379 DOI: 10.1093/EMBOJ/20.16.4522 |
0.521 |
|
| 2001 |
Donze D, Kamakaka RT. RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae. The Embo Journal. 20: 520-31. PMID 11157758 DOI: 10.1093/EMBOJ/20.3.520 |
0.528 |
|
| 2000 |
Dhillon N, Kamakaka RT. A histone variant, Htz1p, and a Sir1p-like protein, Esc2p, mediate silencing at HMR. Molecular Cell. 6: 769-80. PMID 11090616 DOI: 10.1016/S1097-2765(00)00076-9 |
0.475 |
|
| 1999 |
Adams CR, Kamakaka RT. Chromatin assembly: Biochemical identities and genetic redundancy Current Opinion in Genetics and Development. 9: 185-190. PMID 10322140 DOI: 10.1016/S0959-437X(99)80028-8 |
0.485 |
|
| 1999 |
Donze D, Adams CR, Rine J, Kamakaka RT. The boundaries of the silenced HMR domain in Saccharomyces cerevisiae Genes and Development. 13: 698-708. PMID 10090726 DOI: 10.1101/Gad.13.6.698 |
0.642 |
|
| 1997 |
Kamakaka RT. Silencers and locus control regions: opposite sides of the same coin. Trends in Biochemical Sciences. 22: 124-8. PMID 9149531 DOI: 10.1016/S0968-0004(96)10074-8 |
0.317 |
|
| 1996 |
Tyler JK, Bulger M, Kamakaka RT, Kobayashi R, Kadonaga JT. The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Molecular and Cellular Biology. 16: 6149-59. PMID 8887645 DOI: 10.1128/Mcb.16.11.6149 |
0.654 |
|
| 1996 |
Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT. Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Molecular and Cellular Biology. 16: 810-7. PMID 8622682 DOI: 10.1128/Mcb.16.3.810 |
0.645 |
|
| 1995 |
Bulger M, Ito T, Kamakaka RT, Kadonaga JT. Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 92: 11726-30. PMID 8524837 DOI: 10.1073/Pnas.92.25.11726 |
0.695 |
|
| 1994 |
Kamakaka RT, Kaufman PD, Stillman B, Mitsis PG, Kadonaga JT. Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro. Molecular and Cellular Biology. 14: 5114-22. PMID 8035793 DOI: 10.1128/Mcb.14.8.5114 |
0.616 |
|
| 1994 |
Paranjape SM, Kamakaka RT, Kadonaga JT. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annual Review of Biochemistry. 63: 265-97. PMID 7979240 DOI: 10.1146/annurev.bi.63.070194.001405 |
0.659 |
|
| 1994 |
Pazin MJ, Kamakaka RT, Kadonaga JT. ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates. Science (New York, N.Y.). 266: 2007-11. PMID 7801129 DOI: 10.1126/Science.7801129 |
0.699 |
|
| 1994 |
Kamakaka RT, Kadonaga JT. The soluble nuclear fraction, a highly efficient transcription extract from Drosophila embryos. Methods in Cell Biology. 44: 225-35. PMID 7707954 DOI: 10.1016/S0091-679X(08)60916-4 |
0.709 |
|
| 1993 |
Kamakaka RT, Bulger M, Kadonaga JT. Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes & Development. 7: 1779-95. PMID 8370526 DOI: 10.1101/Gad.7.9.1779 |
0.697 |
|
| 1993 |
Kamakaka RT, Kadonaga JT. Biochemical analysis of the role of chromatin structure in the regulation of transcription by RNA polymerase II. Cold Spring Harbor Symposia On Quantitative Biology. 58: 205-12. PMID 7956031 DOI: 10.1101/Sqb.1993.058.01.025 |
0.66 |
|
| 1991 |
Kamakaka RT, Tyree CM, Kadonaga JT. Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proceedings of the National Academy of Sciences of the United States of America. 88: 1024-8. PMID 1992453 DOI: 10.1073/Pnas.88.3.1024 |
0.691 |
|
| 1990 |
Kamakaka RT, Thomas JO. Chromatin structure of transcriptionally competent and repressed genes. The Embo Journal. 9: 3997-4006. DOI: 10.1002/J.1460-2075.1990.Tb07621.X |
0.766 |
|
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