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Xun Lan, Ph.D. - Publications

Affiliations: 
2012 Integrated Biomedical Science Ohio State University, Columbus, Columbus, OH 
Area:
Molecular Biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Glassberg EC, Gao Z, Harpak A, Lan X, Pritchard JK. Evidence for Weak Selective Constraint on Human Gene Expression. Genetics. PMID 30554168 DOI: 10.1534/Genetics.118.301833  0.364
2018 Hankey W, Chen Z, Bergman MJ, Fernandez MO, Hancioglu B, Lan X, Jegga AG, Zhang J, Jin VX, Aronow BJ, Wang Q, Groden J. Chromatin-associated APC regulates gene expression in collaboration with canonical WNT signaling and AP-1. Oncotarget. 9: 31214-31230. PMID 30131849 DOI: 10.18632/Oncotarget.25781  0.418
2018 Sparvoli D, Richardson E, Osakada H, Lan X, Iwamoto M, Bowman GR, Kontur C, Bourland WA, Lynn DH, Pritchard JK, Haraguchi T, Dacks JB, Turkewitz AP. Remodeling the Specificity of an Endosomal CORVET Tether Underlies Formation of Regulated Secretory Vesicles in the Ciliate Tetrahymena thermophila. Current Biology : Cb. PMID 29478853 DOI: 10.1016/J.Cub.2018.01.047  0.315
2017 Harpak A, Lan X, Gao Z, Pritchard JK. Frequent nonallelic gene conversion on the human lineage and its effect on the divergence of gene duplicates. Proceedings of the National Academy of Sciences of the United States of America. PMID 29138319 DOI: 10.1073/Pnas.1708151114  0.369
2016 Kontur C, Kumar S, Lan X, Pritchard JK, Turkewitz AP. Whole Genome Sequencing Identifies a Novel Factor Required for Secretory Granule Maturation in Tetrahymena thermophila. G3 (Bethesda, Md.). PMID 27317773 DOI: 10.1534/G3.116.028878  0.373
2016 Lan X, Pritchard JK. Coregulation of tandem duplicate genes slows evolution of subfunctionalization in mammals. Science (New York, N.Y.). 352: 1009-13. PMID 27199432 DOI: 10.1126/Science.Aad8411  0.392
2015 Liu B, Fang L, Long R, Lan X, Chou KC. iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition. Bioinformatics (Oxford, England). PMID 26476782 DOI: 10.1093/Bioinformatics/Btv604  0.405
2015 Chen Z, Lan X, Wu D, Sunkel B, Ye Z, Huang J, Liu Z, Clinton SK, Jin VX, Wang Q. Ligand-dependent genomic function of glucocorticoid receptor in triple-negative breast cancer. Nature Communications. 6: 8323. PMID 26374485 DOI: 10.1038/Ncomms9323  0.382
2015 Chen Z, Lan X, Thomas-Ahner JM, Wu D, Liu X, Ye Z, Wang L, Sunkel B, Grenade C, Chen J, Zynger DL, Yan PS, Huang J, Nephew KP, Huang TH, et al. Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer. The Embo Journal. 34: 502-16. PMID 25535248 DOI: 10.15252/Embj.201490306  0.344
2014 Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels. Plos Genetics. 10: e1004663. PMID 25233095 DOI: 10.1371/Journal.Pgen.1004663  0.391
2014 Liu B, Xu J, Lan X, Xu R, Zhou J, Wang X, Chou KC. iDNA-Prot|dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition. Plos One. 9: e106691. PMID 25184541 DOI: 10.1371/Journal.Pone.0106691  0.353
2013 Hsu PY, Hsu HK, Lan X, Juan L, Yan PS, Labanowska J, Heerema N, Hsiao TH, Chiu YC, Chen Y, Liu Y, Li L, Li R, Thompson IM, Nephew KP, et al. Amplification of distant estrogen response elements deregulates target genes associated with tamoxifen resistance in breast cancer. Cancer Cell. 24: 197-212. PMID 23948299 DOI: 10.1016/J.Ccr.2013.07.007  0.362
2013 Wang R, Hsu HK, Blattler A, Wang Y, Lan X, Wang Y, Hsu PY, Leu YW, Huang TH, Farnham PJ, Jin VX. LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq data. Plos One. 8: e67788. PMID 23825685 DOI: 10.1371/Journal.Pone.0067788  0.344
2013 Wang J, Lan X, Hsu PY, Hsu HK, Huang K, Parvin J, Huang TH, Jin VX. Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation. Bmc Genomics. 14: 70. PMID 23368971 DOI: 10.1186/1471-2164-14-70  0.349
2012 Lan X, Farnham PJ, Jin VX. Uncovering transcription factor modules using one- and three-dimensional analyses. The Journal of Biological Chemistry. 287: 30914-21. PMID 22952238 DOI: 10.1074/Jbc.R111.309229  0.357
2012 Lan X, Witt H, Katsumura K, Ye Z, Wang Q, Bresnick EH, Farnham PJ, Jin VX. Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages. Nucleic Acids Research. 40: 7690-704. PMID 22675074 DOI: 10.1093/Nar/Gks501  0.386
2012 Liu R, Lei JX, Luo C, Lan X, Chi L, Deng P, Lei S, Ghribi O, Liu QY. Increased EID1 nuclear translocation impairs synaptic plasticity and memory function associated with pathogenesis of Alzheimer's disease. Neurobiology of Disease. 45: 902-12. PMID 22186421 DOI: 10.1016/J.Nbd.2011.12.007  0.305
2012 Kennedy BA, Lan X, Huang TH, Farnham PJ, Jin VX. Using ChIPMotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments. Methods in Molecular Biology (Clifton, N.J.). 802: 323-34. PMID 22130890 DOI: 10.1007/978-1-61779-400-1_21  0.345
2011 Lan X, Adams C, Landers M, Dudas M, Krissinger D, Marnellos G, Bonneville R, Xu M, Wang J, Huang TH, Meredith G, Jin VX. High resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technology. Plos One. 6: e22226. PMID 21779396 DOI: 10.1371/Journal.Pone.0022226  0.34
2011 Zuo T, Liu TM, Lan X, Weng YI, Shen R, Gu F, Huang YW, Liyanarachchi S, Deatherage DE, Hsu PY, Taslim C, Ramaswamy B, Shapiro CL, Lin HJ, Cheng AS, et al. Epigenetic silencing mediated through activated PI3K/AKT signaling in breast cancer. Cancer Research. 71: 1752-62. PMID 21216892 DOI: 10.1158/0008-5472.Can-10-3573  0.353
2010 Bapat SA, Jin V, Berry N, Balch C, Sharma N, Kurrey N, Zhang S, Fang F, Lan X, Li M, Kennedy B, Bigsby RM, Huang TH, Nephew KP. Multivalent epigenetic marks confer microenvironment-responsive epigenetic plasticity to ovarian cancer cells. Epigenetics. 5: 716-29. PMID 20676026 DOI: 10.4161/Epi.5.8.13014  0.382
2010 Frietze S, Lan X, Jin VX, Farnham PJ. Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263. The Journal of Biological Chemistry. 285: 1393-403. PMID 19887448 DOI: 10.1074/Jbc.M109.063032  0.404
2008 Zhong Q, Zhang Q, Wang Z, Qi J, Chen Y, Li S, Sun Y, Li C, Lan X. Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis. Marine Biotechnology (New York, N.Y.). 10: 310-8. PMID 18214610 DOI: 10.1007/S10126-007-9064-7  0.359
2008 Zhong Q, Zhang Q, Chen Y, Sun Y, Qi J, Wang Z, Li S, Li C, Lan X. The isolation and characterization of myostatin gene in Japanese flounder (Paralichthys olivaceus): Ubiquitous tissue expression and developmental specific regulation Aquaculture. 280: 247-255. DOI: 10.1016/J.Aquaculture.2008.04.015  0.396
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