Year |
Citation |
Score |
2021 |
Garcia SL, Mehrshad M, Buck M, Tsuji JM, Neufeld JD, McMahon KD, Bertilsson S, Greening C, Peura S. Freshwater Exhibit Metabolic Specialization among Cosmopolitan and Endemic Populations. Msystems. 6. PMID 33975970 DOI: 10.1128/mSystems.01196-20 |
0.64 |
|
2021 |
McDaniel EA, Wever R, Oyserman BO, Noguera DR, McMahon KD. Genome-Resolved Metagenomics of a Photosynthetic Bioreactor Performing Biological Nutrient Removal. Microbiology Resource Announcements. 10. PMID 33958420 DOI: 10.1128/MRA.00244-21 |
0.618 |
|
2021 |
Tran PQ, Bachand SC, McIntyre PB, Kraemer BM, Vadeboncoeur Y, Kimirei IA, Tamatamah R, McMahon KD, Anantharaman K. Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika. The Isme Journal. PMID 33564113 DOI: 10.1038/s41396-021-00898-x |
0.617 |
|
2021 |
Berg M, Goudeau D, Olmsted C, McMahon KD, Yitbarek S, Thweatt JL, Bryant DA, Eloe-Fadrosh EA, Malmstrom RR, Roux S. Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The Isme Journal. PMID 33452481 DOI: 10.1038/s41396-020-00870-1 |
0.529 |
|
2020 |
Peterson BD, McDaniel EA, Schmidt AG, Lepak RF, Janssen SE, Tran PQ, Marick RA, Ogorek JM, DeWild JF, Krabbenhoft DP, McMahon KD. Mercury Methylation Genes Identified across Diverse Anaerobic Microbial Guilds in a Eutrophic Sulfate-Enriched Lake. Environmental Science & Technology. PMID 33228362 DOI: 10.1021/acs.est.0c05435 |
0.588 |
|
2020 |
Lawson CE, Nuijten GHL, de Graaf RM, Jacobson TB, Pabst M, Stevenson DM, Jetten MSM, Noguera DR, McMahon KD, Amador-Noguez D, Lücker S. Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo C and H metabolic network mapping. The Isme Journal. PMID 33082573 DOI: 10.1038/s41396-020-00805-w |
0.56 |
|
2020 |
Beier S, Andersson AF, Galand PE, Hochart C, Logue JB, McMahon K, Bertilsson S. The environment drives microbial trait variability in aquatic habitats. Molecular Ecology. PMID 33001506 DOI: 10.1111/mec.15656 |
0.595 |
|
2020 |
Chen LX, Méheust R, Crits-Christoph A, McMahon KD, Nelson TC, Slater GF, Warren LA, Banfield JF. Large freshwater phages with the potential to augment aerobic methane oxidation. Nature Microbiology. PMID 32839536 DOI: 10.1038/S41564-020-0779-9 |
0.602 |
|
2020 |
McDaniel EA, Peterson BD, Stevens SLR, Tran PQ, Anantharaman K, McMahon KD. Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms. Msystems. 5. PMID 32817383 DOI: 10.1128/mSystems.00299-20 |
0.589 |
|
2020 |
Fernandez L, Peura S, Eiler A, Linz AM, McMahon KD, Bertilsson S. Diazotroph Genomes and Their Seasonal Dynamics in a Stratified Humic Bog Lake. Frontiers in Microbiology. 11: 1500. PMID 32714313 DOI: 10.3389/Fmicb.2020.01500 |
0.592 |
|
2020 |
Schulz F, Roux S, Paez-Espino D, Jungbluth S, Walsh D, Denef VJ, McMahon KD, Konstantinidis KT, Eloe-Fadrosh EA, Kyrpides N, Woyke T. Giant virus diversity and host interactions through global metagenomics. Nature. PMID 31968354 DOI: 10.1038/S41586-020-1957-X |
0.584 |
|
2020 |
Lima MS, Schneck F, They NH, Crossetti LO, Bohnenberger JE, McMahon KD, Marques DdM. Turnover is replaced by nestedness with increasing geographical distance in bacterial communities of coastal shallow lakes Marine and Freshwater Research. 71: 1086-1098. DOI: 10.1071/Mf19110 |
0.574 |
|
2020 |
Grossart H, Massana R, McMahon KD, Walsh DA. Linking metagenomics to aquatic microbial ecology and biogeochemical cycles Limnology and Oceanography. 65. DOI: 10.1002/Lno.11382 |
0.588 |
|
2020 |
Linz AM, Aylward FO, Bertilsson S, McMahon KD. Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems Limnology and Oceanography. 65. DOI: 10.1002/Lno.11306 |
0.536 |
|
2019 |
Paez-Espino D, Zhou J, Roux S, Nayfach S, Pavlopoulos GA, Schulz F, McMahon KD, Walsh D, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Tringe SG, Kyrpides NC. Diversity, evolution, and classification of virophages uncovered through global metagenomics. Microbiome. 7: 157. PMID 31823797 DOI: 10.1186/S40168-019-0768-5 |
0.555 |
|
2019 |
Chen LX, Zhao Y, McMahon KD, Mori JF, Jessen GL, Nelson TC, Warren LA, Banfield JF. Wide Distribution of Phage That Infect Freshwater SAR11 Bacteria. Msystems. 4. PMID 31641047 DOI: 10.1128/mSystems.00410-19 |
0.579 |
|
2019 |
Lawson CE, Harcombe WR, Hatzenpichler R, Lindemann SR, Löffler FE, O'Malley MA, García Martín H, Pfleger BF, Raskin L, Venturelli OS, Weissbrodt DG, Noguera DR, McMahon KD. Common principles and best practices for engineering microbiomes. Nature Reviews. Microbiology. PMID 31548653 DOI: 10.1038/S41579-019-0255-9 |
0.504 |
|
2019 |
Camejo PY, Oyserman BO, McMahon KD, Noguera DR. Integrated Omic Analyses Provide Evidence that a " Accumulibacter phosphatis" Strain Performs Denitrification under Microaerobic Conditions. Msystems. 4. PMID 30944872 DOI: 10.1128/mSystems.00193-18 |
0.59 |
|
2019 |
He S, Lau MP, Linz AM, Roden EE, McMahon KD. Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes. Msphere. 4. PMID 30674644 DOI: 10.1128/mSphere.00436-18 |
0.546 |
|
2018 |
Linz AM, He S, Stevens SLR, Anantharaman K, Rohwer RR, Malmstrom RR, Bertilsson S, McMahon KD. Freshwater carbon and nutrient cycles revealed through reconstructed population genomes. Peerj. 6: e6075. PMID 30581671 DOI: 10.7717/Peerj.6075 |
0.629 |
|
2018 |
Dwulit-Smith JR, Hamilton JJ, Stevenson DM, He S, Oyserman BO, Moya-Flores F, Garcia SL, Amador-Noguez D, McMahon KD, Forest KT. acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively-synthesized Retinal. Applied and Environmental Microbiology. PMID 30315080 DOI: 10.1128/Aem.01678-18 |
0.562 |
|
2018 |
Rohwer RR, Hamilton JJ, Newton RJ, McMahon KD. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution. Msphere. 3. PMID 30185512 DOI: 10.1128/mSphere.00327-18 |
0.584 |
|
2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... McMahon KD, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A |
0.515 |
|
2018 |
Garcia SL, Buck M, Hamilton JJ, Wurzbacher C, Grossart HP, McMahon KD, Eiler A. Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria. Msphere. 3. PMID 29848762 DOI: 10.1128/mSphere.00202-18 |
0.618 |
|
2018 |
Herren CM, McMahon KD. Keystone taxa predict compositional change in microbial communities. Environmental Microbiology. PMID 29708645 DOI: 10.1111/1462-2920.14257 |
0.599 |
|
2018 |
Korosh TC, Dutcher A, Pfleger BF, McMahon KD. Inhibition of Cyanobacterial Growth on a Municipal Wastewater Sidestream Is Impacted by Temperature. Msphere. 3. PMID 29507895 DOI: 10.1128/mSphere.00538-17 |
0.551 |
|
2018 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... McMahon KD, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A |
0.543 |
|
2017 |
Garcia SL, Stevens SLR, Crary B, Martinez-Garcia M, Stepanauskas R, Woyke T, Tringe SG, Andersson SGE, Bertilsson S, Malmstrom RR, McMahon KD. Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations. The Isme Journal. PMID 29222442 DOI: 10.1038/S41396-017-0001-0 |
0.588 |
|
2017 |
Camejo PY, Owen BR, Martirano J, Ma J, Kapoor V, Domingo JS, McMahon KD, Noguera DR. Corrigendum to "Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors" [Water Res. 102 (2016) 125-137]. Water Research. 127: 258. PMID 29153149 DOI: 10.1016/J.Watres.2017.10.056 |
0.508 |
|
2017 |
Korosh TC, Markley AL, Clark RL, McGinley LL, McMahon KD, Pfleger BF. Engineering photosynthetic production of L-lysine. Metabolic Engineering. PMID 29111438 DOI: 10.1016/J.Ymben.2017.10.010 |
0.519 |
|
2017 |
Tiede J, Scherber C, Mutschler J, McMahon KD, Gratton C. Gut microbiomes of mobile predators vary with landscape context and species identity. Ecology and Evolution. 7: 8545-8557. PMID 29075470 DOI: 10.1002/Ece3.3390 |
0.562 |
|
2017 |
Roux S, Chan LK, Egan R, Malmstrom RR, McMahon KD, Sullivan MB. Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics. Nature Communications. 8: 858. PMID 29021524 DOI: 10.1038/S41467-017-01086-2 |
0.605 |
|
2017 |
Hall MW, Rohwer RR, Perrie J, McMahon KD, Beiko RG. Ananke: temporal clustering reveals ecological dynamics of microbial communities. Peerj. 5: e3812. PMID 28966891 DOI: 10.7717/Peerj.3812 |
0.574 |
|
2017 |
He S, Stevens SLR, Chan LK, Bertilsson S, Glavina Del Rio T, Tringe SG, Malmstrom RR, McMahon KD. Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes. Msphere. 2. PMID 28959738 DOI: 10.1128/mSphere.00277-17 |
0.612 |
|
2017 |
Camejo PY, Santo Domingo J, McMahon KD, Noguera DR. Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa". Msystems. 2. PMID 28905001 DOI: 10.1128/mSystems.00059-17 |
0.587 |
|
2017 |
Hamilton JJ, Garcia SL, Brown BS, Oyserman BO, Moya-Flores F, Bertilsson S, Malmstrom RR, Forest KT, McMahon KD. Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI. Msystems. 2. PMID 28861526 DOI: 10.1128/mSystems.00091-17 |
0.599 |
|
2017 |
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... McMahon KD, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893 |
0.56 |
|
2017 |
Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes". Msphere. 2. PMID 28744483 DOI: 10.1128/mSphere.00296-17 |
0.54 |
|
2017 |
Herren CM, McMahon KD. Cohesion: a method for quantifying the connectivity of microbial communities. The Isme Journal. PMID 28731477 DOI: 10.1038/Ismej.2017.91 |
0.606 |
|
2017 |
Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD. Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes. Msphere. 2. PMID 28680968 DOI: 10.1128/mSphere.00169-17 |
0.642 |
|
2017 |
Lawson CE, Wu S, Bhattacharjee AS, Hamilton JJ, McMahon KD, Goel R, Noguera DR. Metabolic network analysis reveals microbial community interactions in anammox granules. Nature Communications. 8: 15416. PMID 28561030 DOI: 10.1038/Ncomms15416 |
0.622 |
|
2017 |
Bhattacharjee AS, Wu S, Lawson CE, Jetten MS, Kapoor V, Domingo JW, McMahon KD, Noguera DR, Goel R. Whole community metagenomics in two different anammox configurations: process performance and community structure. Environmental Science & Technology. PMID 28306234 DOI: 10.1021/Acs.Est.6B05855 |
0.64 |
|
2017 |
Oyserman BO, Martirano JM, Wipperfurth S, Owen BR, Noguera DR, McMahon KD. Community Assembly and Ecology of Activated Sludge Under Photosynthetic Feast/Famine Conditions. Environmental Science & Technology. PMID 28240542 DOI: 10.1021/Acs.Est.6B03976 |
0.631 |
|
2017 |
Snortheim CA, Hanson PC, McMahon KD, Read JS, Carey CC, Dugan HA. Meteorological drivers of hypolimnetic anoxia in a eutrophic, north temperate lake Ecological Modelling. 343: 39-53. DOI: 10.1016/J.Ecolmodel.2016.10.014 |
0.527 |
|
2016 |
Herren CM, Webert KC, McMahon KD. Environmental Disturbances Decrease the Variability of Microbial Populations within Periphyton. Msystems. 1. PMID 27822539 DOI: 10.1128/mSystems.00013-16 |
0.617 |
|
2016 |
Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, ... ... McMahon K, et al. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Research. PMID 27799466 DOI: 10.1093/Nar/Gkw1030 |
0.571 |
|
2016 |
Camejo PY, Owen BR, Martirano J, Ma J, Kapoor V, Santo Domingo J, McMahon KD, Noguera DR. Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors. Water Research. 102: 125-137. PMID 27340814 DOI: 10.1016/J.Watres.2016.06.033 |
0.531 |
|
2016 |
Oyserman BO, Moya F, Lawson CE, Garcia AL, Vogt M, Heffernen M, Noguera DR, McMahon KD. Ancestral genome reconstruction identifies the evolutionary basis for trait acquisition in polyphosphate accumulating bacteria. The Isme Journal. PMID 27128993 DOI: 10.1038/Ismej.2016.67 |
0.58 |
|
2016 |
Eiler A, Mondav R, Sinclair L, Fernandez-Vidal L, Scofield DG, Schwientek P, Martinez-Garcia M, Torrents D, McMahon KD, Andersson SG, Stepanauskas R, Woyke T, Bertilsson S. Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. The Isme Journal. PMID 26784354 DOI: 10.1038/Ismej.2015.260 |
0.576 |
|
2016 |
Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, ... ... McMahon KD, et al. Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. The Isme Journal. PMID 26744812 DOI: 10.1038/Ismej.2015.241 |
0.58 |
|
2016 |
Eiler A, Mondav R, Sinclair L, Fernandez-Vidal L, Scofield DG, Schwientek P, Martinez-Garcia M, Torrents D, McMahon KD, Andersson SGE, Stepanauskas R, Woyke T, Bertilsson S. Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria Isme Journal. DOI: 10.1038/ismej.2015.260 |
0.505 |
|
2016 |
Lima MS, da Motta Marques D, They NH, McMahon KD, Rodrigues LR, Cardoso LDS, Crossetti LO. Contrasting factors drive within-lake bacterial community composition and functional traits in a large shallow subtropical lake Hydrobiologia. 1-16. DOI: 10.1007/S10750-015-2610-9 |
0.621 |
|
2015 |
Srivastava A, McMahon KD, Stepanauskas R, Grossart HP. De novo synthesis and functional analysis of the phosphatase-encoding gene acI-B of uncultured Actinobacteria from Lake Stechlin (NE Germany). International Microbiology : the Official Journal of the Spanish Society For Microbiology. 18: 39-47. PMID 27762428 DOI: 10.2436/20.1501.01.262 |
0.612 |
|
2015 |
Oyserman BO, Noguera DR, Del Rio TG, Tringe SG, McMahon KD. Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis. The Isme Journal. PMID 26555245 DOI: 10.1038/Ismej.2015.155 |
0.583 |
|
2015 |
Garcia SL, Buck M, McMahon KD, Grossart HP, Eiler A, Warnecke F. Auxotrophy and intra-population complementary in the 'interactome' of a cultivated freshwater model community. Molecular Ecology. PMID 26179741 DOI: 10.1111/Mec.13319 |
0.605 |
|
2015 |
Beversdorf LJ, Miller TR, McMahon KD. Long-term monitoring reveals carbon-nitrogen metabolism key to microcystin production in eutrophic lakes. Frontiers in Microbiology. 6: 456. PMID 26029192 DOI: 10.3389/Fmicb.2015.00456 |
0.565 |
|
2015 |
Beversdorf LJ, Chaston SD, Miller TR, McMahon KD. Microcystin mcyA and mcyE Gene Abundances Are Not Appropriate Indicators of Microcystin Concentrations in Lakes. Plos One. 10: e0125353. PMID 25945933 DOI: 10.1371/Journal.Pone.0125353 |
0.6 |
|
2015 |
McMahon K. 'Metagenomics 2.0'. Environmental Microbiology Reports. 7: 38-9. PMID 25721602 DOI: 10.1111/1758-2229.12253 |
0.573 |
|
2015 |
Fey SB, Mertens AN, Beversdorf LJ, McMahon KD, Cottingham KL. Recognizing cross-ecosystem responses to changing temperatures: Soil warming impacts pelagic food webs Oikos. 124: 1473-1481. DOI: 10.1111/Oik.01939 |
0.537 |
|
2014 |
Ghylin TW, Garcia SL, Moya F, Oyserman BO, Schwientek P, Forest KT, Mutschler J, Dwulit-Smith J, Chan LK, Martinez-Garcia M, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F, ... ... McMahon KD, et al. Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage. The Isme Journal. 8: 2503-16. PMID 25093637 DOI: 10.1038/Ismej.2014.135 |
0.601 |
|
2014 |
Read EK, Ivancic M, Hanson P, Cade-Menun BJ, McMahon KD. Phosphorus speciation in a eutrophic lake by ³¹P NMR spectroscopy. Water Research. 62: 229-40. PMID 24956605 DOI: 10.1016/J.Watres.2014.06.005 |
0.526 |
|
2014 |
Garcia SL, McMahon KD, Grossart HP, Warnecke F. Successful enrichment of the ubiquitous freshwater acI Actinobacteria. Environmental Microbiology Reports. 6: 21-7. PMID 24596259 DOI: 10.1111/1758-2229.12104 |
0.57 |
|
2014 |
Eiler A, Zaremba-Niedzwiedzka K, Martínez-García M, McMahon KD, Stepanauskas R, Andersson SG, Bertilsson S. Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics. Environmental Microbiology. 16: 2682-98. PMID 24118837 DOI: 10.1111/1462-2920.12301 |
0.645 |
|
2013 |
Flowers JJ, Cadkin TA, McMahon KD. Seasonal bacterial community dynamics in a full-scale enhanced biological phosphorus removal plant. Water Research. 47: 7019-31. PMID 24200007 DOI: 10.1016/J.Watres.2013.07.054 |
0.802 |
|
2013 |
Miller TR, Beversdorf L, Chaston SD, McMahon KD. Spatiotemporal molecular analysis of cyanobacteria blooms reveals Microcystis--Aphanizomenon interactions. Plos One. 8: e74933. PMID 24086400 DOI: 10.1371/Journal.Pone.0074933 |
0.575 |
|
2013 |
Flowers JJ, He S, Malfatti S, del Rio TG, Tringe SG, Hugenholtz P, McMahon KD. Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal. The Isme Journal. 7: 2301-14. PMID 23887171 DOI: 10.1038/Ismej.2013.117 |
0.79 |
|
2013 |
McMahon KD, Read EK. Microbial contributions to phosphorus cycling in eutrophic lakes and wastewater. Annual Review of Microbiology. 67: 199-219. PMID 23799816 DOI: 10.1146/Annurev-Micro-092412-155713 |
0.582 |
|
2013 |
Beversdorf LJ, Miller TR, McMahon KD. The role of nitrogen fixation in cyanobacterial bloom toxicity in a temperate, eutrophic lake. Plos One. 8: e56103. PMID 23405255 DOI: 10.1371/Journal.Pone.0056103 |
0.568 |
|
2013 |
Bareither CA, Wolfe GL, McMahon KD, Benson CH. Microbial diversity and dynamics during methane production from municipal solid waste. Waste Management (New York, N.Y.). 33: 1982-92. PMID 23318155 DOI: 10.1016/J.Wasman.2012.12.013 |
0.609 |
|
2013 |
Youngblut ND, Shade A, Read JS, McMahon KD, Whitaker RJ. Lineage-specific responses of microbial communities to environmental change. Applied and Environmental Microbiology. 79: 39-47. PMID 23064335 DOI: 10.1128/Aem.02226-12 |
0.641 |
|
2013 |
Kara EL, Hanson PC, Hu YH, Winslow L, McMahon KD. A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA. The Isme Journal. 7: 680-4. PMID 23051691 DOI: 10.1038/Ismej.2012.118 |
0.56 |
|
2013 |
Garcia SL, McMahon KD, Martinez-Garcia M, Srivastava A, Sczyrba A, Stepanauskas R, Grossart HP, Woyke T, Warnecke F. Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. The Isme Journal. 7: 137-47. PMID 22810059 DOI: 10.1038/Ismej.2012.86 |
0.605 |
|
2013 |
Onnis-Hayden A, Majed N, Drury D, Risso L, McMahon K, Gu AZ. Effect of Sludge Residence Time on Phosphorus Removal Activities and Populations in Enhanced Biological Phosphorus Removal (EBPR) Systems Proceedings of the Water Environment Federation. 2013: 121-132. DOI: 10.2175/193864713813667610 |
0.53 |
|
2012 |
Ghai R, McMahon KD, Rodriguez-Valera F. Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC. Environmental Microbiology Reports. 4: 29-35. PMID 23757226 DOI: 10.1111/J.1758-2229.2011.00274.X |
0.605 |
|
2012 |
Jones SE, Cadkin TA, Newton RJ, McMahon KD. Spatial and temporal scales of aquatic bacterial beta diversity. Frontiers in Microbiology. 3: 318. PMID 22969757 DOI: 10.3389/Fmicb.2012.00318 |
0.616 |
|
2012 |
Ghai R, Hernandez CM, Picazo A, Mizuno CM, Ininbergs K, Díez B, Valas R, DuPont CL, McMahon KD, Camacho A, Rodriguez-Valera F. Metagenomes of Mediterranean coastal lagoons. Scientific Reports. 2: 490. PMID 22778901 DOI: 10.1038/Srep00490 |
0.632 |
|
2012 |
Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J, Whitaker RJ, Wu CH, McMahon KD. Lake microbial communities are resilient after a whole-ecosystem disturbance. The Isme Journal. 6: 2153-67. PMID 22739495 DOI: 10.1038/Ismej.2012.56 |
0.632 |
|
2012 |
Kara EL, Hanson P, Hamilton D, Hipsey MR, McMahon KD, Read JS, Winslow L, Dedrick J, Rose K, Carey CC, Bertilsson S, da Motta Marques D, Beversdorf L, Miller T, Wu C, et al. Time-scale dependence in numerical simulations: Assessment of physical, chemical, and biological predictions in a stratified lake at temporal scales of hours to months Environmental Modelling and Software. 35: 104-121. DOI: 10.1016/J.Envsoft.2012.02.014 |
0.532 |
|
2011 |
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F. New abundant microbial groups in aquatic hypersaline environments. Scientific Reports. 1: 135. PMID 22355652 DOI: 10.1038/Srep00135 |
0.583 |
|
2011 |
Ghai R, Rodriguez-Valera F, McMahon KD, Toyama D, Rinke R, Cristina Souza de Oliveira T, Wagner Garcia J, Pellon de Miranda F, Henrique-Silva F. Metagenomics of the water column in the pristine upper course of the Amazon river. Plos One. 6: e23785. PMID 21915244 DOI: 10.1371/Journal.Pone.0023785 |
0.583 |
|
2011 |
Shade A, Read JS, Welkie DG, Kratz TK, Wu CH, McMahon KD. Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance. Environmental Microbiology. 13: 2752-67. PMID 21883795 DOI: 10.1111/J.1462-2920.2011.02546.X |
0.609 |
|
2011 |
Miller TR, McMahon KD. Genetic diversity of cyanobacteria in four eutrophic lakes. Fems Microbiology Ecology. 78: 336-48. PMID 21707672 DOI: 10.1111/J.1574-6941.2011.01162.X |
0.551 |
|
2011 |
Hoover SW, Marner WD, Brownson AK, Lennen RM, Wittkopp TM, Yoshitani J, Zulkifly S, Graham LE, Chaston SD, McMahon KD, Pfleger BF. Bacterial production of free fatty acids from freshwater macroalgal cellulose. Applied Microbiology and Biotechnology. 91: 435-46. PMID 21643704 DOI: 10.1007/S00253-011-3344-X |
0.523 |
|
2011 |
Skennerton CT, Angly FE, Breitbart M, Bragg L, He S, McMahon KD, Hugenholtz P, Tyson GW. Phage encoded H-NS: a potential achilles heel in the bacterial defence system. Plos One. 6: e20095. PMID 21625595 DOI: 10.1371/Journal.Pone.0020095 |
0.592 |
|
2011 |
Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S. A guide to the natural history of freshwater lake bacteria. Microbiology and Molecular Biology Reviews : Mmbr. 75: 14-49. PMID 21372319 DOI: 10.1128/Mmbr.00028-10 |
0.61 |
|
2011 |
He S, McMahon KD. Microbiology of 'Candidatus Accumulibacter' in activated sludge. Microbial Biotechnology. 4: 603-19. PMID 21338476 DOI: 10.1111/J.1751-7915.2011.00248.X |
0.593 |
|
2011 |
Newton RJ, McMahon KD. Seasonal differences in bacterial community composition following nutrient additions in a eutrophic lake. Environmental Microbiology. 13: 887-99. PMID 21138514 DOI: 10.1111/J.1462-2920.2010.02387.X |
0.628 |
|
2011 |
He S, McMahon KD. 'Candidatus Accumulibacter' gene expression in response to dynamic EBPR conditions. The Isme Journal. 5: 329-40. PMID 20703317 DOI: 10.1038/Ismej.2010.127 |
0.564 |
|
2011 |
Read JS, Shade A, Wu CH, Gorzalski A, McMahon KD. "Gradual entrainment lake inverter" (GELI): A novel device for experimental lake mixing Limnology and Oceanography: Methods. 9: 14-28. DOI: 10.4319/Lom.2011.9.14 |
0.507 |
|
2010 |
He S, Bishop FI, McMahon KD. Bacterial community and "Candidatus Accumulibacter" population dynamics in laboratory-scale enhanced biological phosphorus removal reactors. Applied and Environmental Microbiology. 76: 5479-87. PMID 20601516 DOI: 10.1128/Aem.00370-10 |
0.581 |
|
2010 |
Seyfried EE, Newton RJ, Rubert KF, Pedersen JA, McMahon KD. Occurrence of tetracycline resistance genes in aquaculture facilities with varying use of oxytetracycline. Microbial Ecology. 59: 799-807. PMID 20217406 DOI: 10.1007/S00248-009-9624-7 |
0.521 |
|
2010 |
He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, Hugenholtz P, McMahon KD. Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environmental Microbiology. 12: 1205-17. PMID 20148930 DOI: 10.1111/J.1462-2920.2010.02163.X |
0.552 |
|
2010 |
Shade A, Chiu CY, McMahon KD. Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environmental Microbiology. 12: 455-66. PMID 19878266 DOI: 10.1111/J.1462-2920.2009.02087.X |
0.619 |
|
2010 |
Shade A, Chiu CY, McMahon KD. Seasonal and episodic lake mixing stimulate differential planktonic bacterial dynamics. Microbial Ecology. 59: 546-54. PMID 19760448 DOI: 10.1007/S00248-009-9589-6 |
0.623 |
|
2009 |
Flowers JJ, He S, Yilmaz S, Noguera DR, McMahon KD. Denitrification capabilities of two biological phosphorus removal sludges dominated by different "Candidatus Accumulibacter" clades. Environmental Microbiology Reports. 1: 583-588. PMID 20808723 DOI: 10.1111/J.1758-2229.2009.00090.X |
0.799 |
|
2009 |
Jones SE, Newton RJ, McMahon KD. Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes. Environmental Microbiology. 11: 2463-72. PMID 19558514 DOI: 10.1111/J.1462-2920.2009.01977.X |
0.594 |
|
2009 |
Shade A, Carey CC, Kara E, Bertilsson S, McMahon KD, Smith MC. Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies. The Isme Journal. 3: 881-8. PMID 19458653 DOI: 10.1038/Ismej.2009.56 |
0.58 |
|
2009 |
Jones SE, McMahon KD. Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics. Environmental Microbiology. 11: 905-13. PMID 19040451 DOI: 10.1111/J.1462-2920.2008.01814.X |
0.622 |
|
2009 |
JONES SE, KRATZ TK, CHIU C, McMAHON KD. Influence of typhoons on annual CO2flux from a subtropical, humic lake Global Change Biology. 15: 243-254. DOI: 10.1111/J.1365-2486.2008.01723.X |
0.525 |
|
2008 |
Hinckley GT, Johnson CJ, Jacobson KH, Bartholomay C, McMahon KD, McKenzie D, Aiken JM, Pedersen JA. Persistence of pathogenic prion protein during simulated wastewater treatment processes. Environmental Science & Technology. 42: 5254-9. PMID 18754377 DOI: 10.1021/Es703186E |
0.525 |
|
2008 |
Peterson SB, Warnecke F, Madejska J, McMahon KD, Hugenholtz P. Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal. Environmental Microbiology. 10: 2692-703. PMID 18643843 DOI: 10.1111/J.1462-2920.2008.01690.X |
0.616 |
|
2008 |
Gil IS, Sheldon W, Schmidt T, Servilla M, Aguilar R, Gries C, Gray T, Field D, Cole J, Pan JY, Palanisamy G, Henshaw D, O'Brien M, Kinkel L, McMahon K, et al. Defining linkages between the GSC and NSF's LTER program: how the Ecological Metadata Language (EML) relates to GCDML and other outcomes. Omics : a Journal of Integrative Biology. 12: 151-6. PMID 18407745 DOI: 10.1089/Omi.2008.0015 |
0.541 |
|
2008 |
Jones SE, Newton RJ, McMahon KD. Potential for atmospheric deposition of bacteria to influence bacterioplankton communities. Fems Microbiology Ecology. 64: 388-94. PMID 18393990 DOI: 10.1111/J.1574-6941.2008.00476.X |
0.616 |
|
2008 |
Shade A, Jones SE, McMahon KD. The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics. Environmental Microbiology. 10: 1057-67. PMID 18218031 DOI: 10.1111/J.1462-2920.2007.01527.X |
0.627 |
|
2008 |
Kunin V, He S, Warnecke F, Peterson SB, Garcia Martin H, Haynes M, Ivanova N, Blackall LL, Breitbart M, Rohwer F, McMahon KD, Hugenholtz P. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Research. 18: 293-7. PMID 18077539 DOI: 10.1101/Gr.6835308 |
0.617 |
|
2008 |
Cho YK, Donohue TJ, Tejedor I, Anderson MA, McMahon KD, Noguera DR. Development of a solar-powered microbial fuel cell. Journal of Applied Microbiology. 104: 640-50. PMID 17927750 DOI: 10.1111/J.1365-2672.2007.03580.X |
0.497 |
|
2008 |
He S, Gu AZ, McMahon KD. Progress toward understanding the distribution of Accumulibacter among full-scale enhanced biological phosphorus removal systems. Microbial Ecology. 55: 229-36. PMID 17605067 DOI: 10.1007/S00248-007-9270-X |
0.583 |
|
2008 |
Jones SE, Chiu C, Kratz TK, Wu J, Shade A, McMahon KD. Typhoons initiate predictable change in aquatic bacterial communities Limnology and Oceanography. 53: 1319-1326. DOI: 10.4319/Lo.2008.53.4.1319 |
0.619 |
|
2008 |
Flowers JJ, He S, Carvalho G, Brook Peterson S, Lopez C, Yilmaz S, Zilles JL, Morgenroth E, Lemos PC, Reis MAM, Crespo MTB, Noguera DR, McMahon KD. Ecological Differentiation of Accumulibacter in EBPR Reactors Proceedings of the Water Environment Federation. 2008: 31-42. DOI: 10.2175/193864708788735565 |
0.756 |
|
2008 |
Onnis-Hayden A, Majed N, McMahon KD, Gu AZ. Phosphorus Removal and PAOs Populations at a Full-Scale Integrated Fixed-Film Activated Sludge (IFAS) Plant Proceedings of the Water Environment Federation. 2008: 1-17. DOI: 10.2175/193864708788735484 |
0.495 |
|
2007 |
Kent AD, Yannarell AC, Rusak JA, Triplett EW, McMahon KD. Synchrony in aquatic microbial community dynamics. The Isme Journal. 1: 38-47. PMID 18043612 DOI: 10.1038/Ismej.2007.6 |
0.614 |
|
2007 |
Newton RJ, Jones SE, Helmus MR, McMahon KD. Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Applied and Environmental Microbiology. 73: 7169-76. PMID 17827330 DOI: 10.1128/Aem.00794-07 |
0.633 |
|
2007 |
He S, Gall DL, McMahon KD. "Candidatus Accumulibacter" population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes. Applied and Environmental Microbiology. 73: 5865-74. PMID 17675445 DOI: 10.1128/Aem.01207-07 |
0.589 |
|
2007 |
McMahon KD, Yilmaz S, He S, Gall DL, Jenkins D, Keasling JD. Polyphosphate kinase genes from full-scale activated sludge plants. Applied Microbiology and Biotechnology. 77: 167-73. PMID 17671784 DOI: 10.1007/S00253-007-1122-6 |
0.574 |
|
2007 |
McMahon KD, Martin HG, Hugenholtz P. Integrating ecology into biotechnology. Current Opinion in Biotechnology. 18: 287-92. PMID 17509863 DOI: 10.1016/J.Copbio.2007.04.007 |
0.588 |
|
2007 |
Auerbach EA, Seyfried EE, McMahon KD. Tetracycline resistance genes in activated sludge wastewater treatment plants. Water Research. 41: 1143-51. PMID 17239919 DOI: 10.1016/J.Watres.2006.11.045 |
0.534 |
|
2007 |
Jones SE, Shade AL, McMahon KD, Kent AD. Comparison of primer sets for use in automated ribosomal intergenic spacer analysis of aquatic bacterial communities: an ecological perspective. Applied and Environmental Microbiology. 73: 659-62. PMID 17122397 DOI: 10.1128/Aem.02130-06 |
0.602 |
|
2007 |
Shade A, Kent AD, Jones SE, Newton RJ, Triplett EW, McMahon KD. Interannual dynamics and phenology of bacterial communities in a eutrophic lake Limnology and Oceanography. 52: 487-494. DOI: 10.4319/Lo.2007.52.2.0487 |
0.613 |
|
2007 |
Carpenter SR, Benson BJ, Biggs R, Chipman JW, Foley JA, Golding SA, Hammer RB, Hanson PC, Johnson PTJ, Kamarainen AM, Kratz TK, Lathrop RC, McMahon KD, Provencher B, Rusak JA, et al. Understanding regional change: A comparison of two lake districts Bioscience. 57: 323-335. DOI: 10.1641/B570407 |
0.524 |
|
2006 |
García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, ... ... McMahon KD, et al. Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nature Biotechnology. 24: 1263-9. PMID 16998472 DOI: 10.1038/Nbt1247 |
0.645 |
|
2006 |
He S, Gu AZ, McMahon KD. Fine-scale differences between Accumulibacter-like bacteria in enhanced biological phosphorus removal activated sludge. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 54: 111-7. PMID 16898143 DOI: 10.2166/Wst.2006.378 |
0.565 |
|
2006 |
Kent AD, Jones SE, Lauster GH, Graham JM, Newton RJ, McMahon KD. Experimental manipulations of microbial food web interactions in a humic lake: shifting biological drivers of bacterial community structure. Environmental Microbiology. 8: 1448-59. PMID 16872407 DOI: 10.1111/J.1462-2920.2006.01039.X |
0.64 |
|
2006 |
Newton RJ, Kent AD, Triplett EW, McMahon KD. Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environmental Microbiology. 8: 956-70. PMID 16689717 DOI: 10.1111/J.1462-2920.2005.00979.X |
0.644 |
|
2006 |
Pedersen JA, McMahon KD, Benson CH. Prions: Novel pathogens of environmental concern? Journal of Environmental Engineering. 132: 967-969. DOI: 10.1061/(Asce)0733-9372(2006)132:9(967) |
0.482 |
|
2006 |
Balser TC, McMahon KD, Bart D, Bronson D, Coyle DR, Craig N, Flores-Mangual ML, Forshay K, Jones SE, Kent AE, Shade AL. Bridging the gap between micro - and macro-scale perspectives on the role of microbial communities in global change ecology Plant and Soil. 289: 59-70. DOI: 10.1007/S11104-006-9104-5 |
0.589 |
|
2004 |
McMahon KD, Zheng D, Stams AJ, Mackie RI, Raskin L. Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge. Biotechnology and Bioengineering. 87: 823-34. PMID 15334409 DOI: 10.1002/Bit.20192 |
0.571 |
|
2002 |
McMahon KD, Dojka MA, Pace NR, Jenkins D, Keasling JD. Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal. Applied and Environmental Microbiology. 68: 4971-8. PMID 12324346 DOI: 10.1128/Aem.68.10.4971-4978.2002 |
0.566 |
|
2002 |
McMahon KD, Jenkins D, Keasling JD. Polyphosphate kinase genes from activated sludge carrying out enhanced biological phosphorus removal. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 46: 155-62. PMID 12216617 |
0.6 |
|
2002 |
McMahon K, Jenkins D, Keasling J. Polyphosphate kinase genes from activated sludge carrying out enhanced biological phosphorus removal Water Science and Technology. 46: 155-162. DOI: 10.2166/Wst.2002.0471 |
0.613 |
|
2001 |
Renninger N, McMahon KD, Knopp R, Nitsche H, Clark DS, Keasling JD. Uranyl precipitation by biomass from an enhanced biological phosphorus removal reactor. Biodegradation. 12: 401-10. PMID 12051646 DOI: 10.1023/A:1015018104682 |
0.539 |
|
2001 |
McMahon KD, Stroot PG, Mackie RI, Raskin L. Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions--II: Microbial population dynamics. Water Research. 35: 1817-27. PMID 11329684 DOI: 10.1016/S0043-1354(00)00438-3 |
0.577 |
|
2001 |
Stroot PG, McMahon KD, Mackie RI, Raskin L. Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions--I. Digester performance. Water Research. 35: 1804-16. PMID 11329683 DOI: 10.1016/S0043-1354(00)00439-5 |
0.507 |
|
1998 |
Griffin ME, McMahon KD, Mackie RI, Raskin L. Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids. Biotechnology and Bioengineering. 57: 342-55. PMID 10099211 DOI: 10.1002/(Sici)1097-0290(19980205)57:3<342::Aid-Bit11>3.0.Co;2-I |
0.559 |
|
1998 |
McMahon KD, Stahl DA, Raskin L. A Comparison of the Use of In Vitro-Transcribed and Native rRNA for the Quantification of Microorganisms in the Environment. Microbial Ecology. 36: 362-371. PMID 9852515 DOI: 10.1007/S002489900122 |
0.573 |
|
1998 |
McMahon KD, Stahl DA, Raskin L. A comparison of the use of in vitro-transcribed and native rRNA for the quantification of microorganisms in the environment Microbial Ecology. 36: 362-371. DOI: 10.1007/s002489900122 |
0.537 |
|
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