René Doursat - Related publications

Manchester Metropolitan University, Manchester, England, United Kingdom 
computational biology, bio-inspired computing
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Dries R, Chen J, Del Rossi N, Khan MM, Sistig A, Yuan GC. Advances in spatial transcriptomic data analysis. Genome Research. 31: 1706-1718. PMID 34599004 DOI: 10.1101/gr.275224.121   
2021 Mısırlı G, Yang B, James K, Wipat A. Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits. Acs Synthetic Biology. PMID 34762797 DOI: 10.1021/acssynbio.1c00157   
2021 Luo G, Zhu Y, Zhang R, Cao P, Liu Q, Zhang J, Sun Y, Yuan H, Guo W, Shen Q, Zhang L. A Review on Mechanical Models for Cellular Media: Investigation on Material Characterization and Numerical Simulation. Polymers. 13. PMID 34641100 DOI: 10.3390/polym13193283   
2021 Rand DA, Raju A, Sáez M, Corson F, Siggia ED. Geometry of gene regulatory dynamics. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518231 DOI: 10.1073/pnas.2109729118   
2021 Gaiewski MJ, Drewell RA, Dresch JM. Fitting thermodynamic-based models: Incorporating parameter sensitivity improves the performance of an evolutionary algorithm. Mathematical Biosciences. 108716. PMID 34687735 DOI: 10.1016/j.mbs.2021.108716   
2021 Medina L, Abellán A, Desfilis E. Evolving Views on the Pallium. Brain, Behavior and Evolution. 1-19. PMID 34657034 DOI: 10.1159/000519260   
2021 Chen Q, Wang Y, Song Y. Tracking Control of Self-Restructuring Systems: A Low-Complexity Neuroadaptive PID Approach With Guaranteed Performance. Ieee Transactions On Cybernetics. PMID 34748511 DOI: 10.1109/TCYB.2021.3123191   
2021 Baramidze G, Baramidze V, Xu Y. Mathematical model and computational scheme for multi-phase modeling of cellular population and microenvironmental dynamics in soft tissue. Plos One. 16: e0260108. PMID 34788347 DOI: 10.1371/journal.pone.0260108   
2021 Han J, Perera S, Wunderlich Z, Periwal V. Mechanistic gene networks inferred from single-cell data with an outlier-insensitive method. Mathematical Biosciences. 342: 108722. PMID 34688607 DOI: 10.1016/j.mbs.2021.108722   
2021 Lai X, Taskén HA, Mo T, Funke SW, Frigessi A, Rognes ME, Köhn-Luque A. A scalable solver for a stochastic, hybrid cellular automaton model of personalized breast cancer therapy. International Journal For Numerical Methods in Biomedical Engineering. PMID 34716985 DOI: 10.1002/cnm.3542   
2021 Ciganda D, Todd N. Demographic models of the reproductive process: Past, interlude, and future. Population Studies. 1-19. PMID 34486942 DOI: 10.1080/00324728.2021.1959943   
2021 Schölzel C, Blesius V, Ernst G, Goesmann A, Dominik A. Countering reproducibility issues in mathematical models with software engineering techniques: A case study using a one-dimensional mathematical model of the atrioventricular node. Plos One. 16: e0254749. PMID 34280231 DOI: 10.1371/journal.pone.0254749   
2021 Thomas SS, Palandri J, Lakehal-Ayat M, Chakravarty P, Wolf-Monheim F, Blaschko MB. Kinematics Design of a MacPherson Suspension Architecture Based on Bayesian Optimization. Ieee Transactions On Cybernetics. PMID 34613931 DOI: 10.1109/TCYB.2021.3114403   
2021 Siade AJ, Bostick BC, Cirpka OA, Prommer H. Unraveling biogeochemical complexity through better integration of experiments and modeling. Environmental Science. Processes & Impacts. PMID 34739021 DOI: 10.1039/d1em00303h   
2021 Coomer MA, Ham L, Stumpf MPH. Noise distorts the epigenetic landscape and shapes cell-fate decisions. Cell Systems. PMID 34626539 DOI: 10.1016/j.cels.2021.09.002   
2021 Han Y, Huang G, Song S, Yang L, Wang H, Wang Y. Dynamic Neural Networks: A Survey. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 34613907 DOI: 10.1109/TPAMI.2021.3117837   
2021 Medeiros Filho F, do Nascimento APB, Costa MOCE, Merigueti TC, de Menezes MA, Nicolás MF, Dos Santos MT, Carvalho-Assef APD, da Silva FAB. A Systematic Strategy to Find Potential Therapeutic Targets for Using Integrated Computational Models. Frontiers in Molecular Biosciences. 8: 728129. PMID 34616771 DOI: 10.3389/fmolb.2021.728129   
2021 Gilbert HB. On the Mathematical Modeling of Slender Biomedical Continuum Robots. Frontiers in Robotics and Ai. 8: 732643. PMID 34676248 DOI: 10.3389/frobt.2021.732643   
2021 Guo K, Yang Z, Yu CH, Buehler MJ. Artificial intelligence and machine learning in design of mechanical materials. Materials Horizons. 8: 1153-1172. PMID 34821909 DOI: 10.1039/d0mh01451f   
2021 Anjneya K, Roy K. Acceleration time history dataset for a 3D miniature model of a shear building with structural damage. Data in Brief. 38: 107377. PMID 34589563 DOI: 10.1016/j.dib.2021.107377   
2021 Kashmar N, Adda M, Ibrahim H. HEAD Metamodel: Hierarchical, Extensible, Advanced, and Dynamic Access Control Metamodel for Dynamic and Heterogeneous Structures. Sensors (Basel, Switzerland). 21. PMID 34640825 DOI: 10.3390/s21196507   
2021 Ali S, Ciccolella S, Lucarella L, Vedova GD, Patterson M. Simpler and Faster Development of Tumor Phylogeny Pipelines. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 28: 1142-1155. PMID 34698531 DOI: 10.1089/cmb.2021.0271   
2021 Kratochvíl M, Heirendt L, Wilken SE, Pusa T, Arreckx S, Noronha A, van Aalst M, Satagopam VP, Ebenhöh O, Schneider R, Trefois C, Gu W. COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinformatics (Oxford, England). PMID 34791064 DOI: 10.1093/bioinformatics/btab782   
2021 Liu C, Shi K. A review on methodology in O-NOx-VOC sensitivity study. Environmental Pollution (Barking, Essex : 1987). 118249. PMID 34600066 DOI: 10.1016/j.envpol.2021.118249   
2021 Pepe M, Hesami M, Small F, Jones AMP. Comparative Analysis of Machine Learning and Evolutionary Optimization Algorithms for Precision Micropropagation of : Prediction and Validation of Shoot Growth and Development Based on the Optimization of Light and Carbohydrate Sources. Frontiers in Plant Science. 12: 757869. PMID 34745189 DOI: 10.3389/fpls.2021.757869   
2021 da Silva KM, Iturrospe E, Bars C, Knapen D, Van Cruchten S, Covaci A, van Nuijs ALN. Mass Spectrometry-Based Zebrafish Toxicometabolomics: A Review of Analytical and Data Quality Challenges. Metabolites. 11. PMID 34564451 DOI: 10.3390/metabo11090635   
2021 Ferrettini G, Escriva E, Aligon J, Excoffier JB, Soulé-Dupuy C. Coalitional Strategies for Efficient Individual Prediction Explanation. Information Systems Frontiers : a Journal of Research and Innovation. 1-27. PMID 34054332 DOI: 10.1007/s10796-021-10141-9   
2021 Schladt T, Engelmann N, Kubaczka E, Hochberger C, Koeppl H. Automated Design of Robust Genetic Circuits: Structural Variants and Parameter Uncertainty. Acs Synthetic Biology. PMID 34807573 DOI: 10.1021/acssynbio.1c00193   
2021 Wan Y, Holman HA, Hansen C. Interactive Analysis for Large Volume Data from Fluorescence Microscopy at Cellular Precision. Computers & Graphics. 98: 138-149. PMID 34602661 DOI: 10.1016/j.cag.2021.05.006   
2021 Jung M, Song JS, Hong S, Kim S, Go S, Lim YP, Park J, Park SG, Kim YM. Deep Learning Algorithms Correctly Classify Varieties Using Digital Images. Frontiers in Plant Science. 12: 738685. PMID 34659305 DOI: 10.3389/fpls.2021.738685   
2021 Fan W, He Y, Han X, Feng Y. A new model to identify node importance in complex networks based on DEMATEL method. Scientific Reports. 11: 22829. PMID 34819598 DOI: 10.1038/s41598-021-02306-y   
2021 Schroeder WL, Baber AS, Saha R. Optimization-based Eukaryotic Genetic Circuit Design (EuGeneCiD) and modeling (EuGeneCiM) tools: Computational approach to synthetic biology. Iscience. 24: 103000. PMID 34622181 DOI: 10.1016/j.isci.2021.103000   
2021 Younes YA, Barczyk M. Optimal Motion Planning in GPS-Denied Environments Using Nonlinear Model Predictive Horizon. Sensors (Basel, Switzerland). 21. PMID 34450989 DOI: 10.3390/s21165547   
2021 Gerstner N, Kehl T, Lenhof K, Eckhart L, Schneider L, Stöckel D, Backes C, Meese E, Keller A, Lenhof HP. GeneTrail: A Framework for the Analysis of High-Throughput Profiles. Frontiers in Molecular Biosciences. 8: 716544. PMID 34604304 DOI: 10.3389/fmolb.2021.716544   
2021 Chen SH, Londoño-Larrea P, McGough AS, Bible AN, Gunaratne C, Araujo-Granda PA, Morrell-Falvey JL, Bhowmik D, Fuentes-Cabrera M. Application of Machine Learning Techniques to an Agent-Based Model of . Frontiers in Microbiology. 12: 726409. PMID 34630352 DOI: 10.3389/fmicb.2021.726409   
2021 Miotto M, Monacelli L. TOLOMEO, a Novel Machine Learning Algorithm to Measure Information and Order in Correlated Networks and Predict Their State. Entropy (Basel, Switzerland). 23. PMID 34573763 DOI: 10.3390/e23091138   
2021 Pereira I, Frässle S, Heinzle J, Schöbi D, Do CT, Gruber M, Stephan KE. CONDUCTANCE-BASED DYNAMIC CAUSAL MODELING: A MATHEMATICAL REVIEW OF ITS APPLICATION TO CROSS-POWER SPECTRAL DENSITIES. Neuroimage. 118662. PMID 34687862 DOI: 10.1016/j.neuroimage.2021.118662   
2021 Oyarce E, Roa K, Boulett A, Sotelo S, Cantero-López P, Sánchez J, Rivas BL. Removal of Dyes by Polymer-Enhanced Ultrafiltration: An Overview. Polymers. 13. PMID 34641265 DOI: 10.3390/polym13193450   
2021 Chang CW, Miki T, Ushio M, Ke PJ, Lu HP, Shiah FK, Hsieh CH. Reconstructing large interaction networks from empirical time series data. Ecology Letters. PMID 34601794 DOI: 10.1111/ele.13897   
2021 Zhang H, Ming Z, Yan Y, Wang W. Data-Driven Finite-Horizon Tracking Control With Event-Triggered Mechanism for the Continuous-Time Nonlinear Systems. Ieee Transactions On Neural Networks and Learning Systems. PMID 34633936 DOI: 10.1109/TNNLS.2021.3116464   
2021 Nazarovs J, Chakraborty R, Tasneeyapant S, Ravi SN, Singh V. A Variational Approximation for Analyzing the Dynamics of Panel Data. Uncertainty in Artificial Intelligence : Proceedings of the ... Conference. Conference On Uncertainty in Artificial Intelligence. 2021. PMID 34629958   
2021 Colombo R, Ferron L, Frosi I, Papetti A. Advances in static in vitro digestion models after the COST action Infogest consensus protocol. Food & Function. 12: 7619-7636. PMID 34250533 DOI: 10.1039/d1fo01089a   
2021 Spyroglou I, Skalák J, Balakhonova V, Benedikty Z, Rigas AG, Hejátko J. Mixed Models as a Tool for Comparing Groups of Time Series in Plant Sciences. Plants (Basel, Switzerland). 10. PMID 33668650 DOI: 10.3390/plants10020362   
2021 Li S, Sun Y, Yen GG, Zhang M. Automatic Design of Convolutional Neural Network Architectures Under Resource Constraints. Ieee Transactions On Neural Networks and Learning Systems. PMID 34752407 DOI: 10.1109/TNNLS.2021.3123105   
2021 Song Z, Fang K, Sun X, Liang Y, Lin W, Xu C, Huang G, Yu F. An Effective Method to Accurately Extract the Parameters of Single Diode Model of Solar Cells. Nanomaterials (Basel, Switzerland). 11. PMID 34685053 DOI: 10.3390/nano11102615   
2021 Liu X, Yue R, Zhang Z, Wong WK. -optimal designs for hierarchical linear models: an equivalence theorem and a nature-inspired meta-heuristic algorithm. Soft Computing. 25: 13549-13565. PMID 34720706 DOI: 10.1007/s00500-021-06061-0   
2021 Radev ST, Graw F, Chen S, Mutters NT, Eichel VM, Bärnighausen T, Köthe U. OutbreakFlow: Model-based Bayesian inference of disease outbreak dynamics with invertible neural networks and its application to the COVID-19 pandemics in Germany. Plos Computational Biology. 17: e1009472. PMID 34695111 DOI: 10.1371/journal.pcbi.1009472   
2021 Liu JJ, Liu ZA, Peng P, Cheng MM. Rethinking the U-shape Structure for Salient Object Detection. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 34705648 DOI: 10.1109/TIP.2021.3122093   
2021 Luo Y, Stephens DA. Bayesian inference for continuous-time hidden Markov models with an unknown number of states. Statistics and Computing. 31: 57. PMID 34776654 DOI: 10.1007/s11222-021-10032-8   
2021 Payandeh S, Wael J. Experimental Study of a Deep-Learning RGB-D Tracker for Virtual Remote Human Model Reconstruction. International Journal of Telemedicine and Applications. 2021: 5551753. PMID 34567110 DOI: 10.1155/2021/5551753