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Jin Koh, Ph.D. - Publications

Affiliations: 
2010 University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Evolution and Development Biology, Plant Culture Agriculture, Genetics
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Garcia E, Koh J, Wu X, Sarkhosh A, Liu T. Tissue-specific proteome profile analysis reveals regulatory and stress responsive networks in passion fruit during storage. Scientific Reports. 14: 3564. PMID 38346991 DOI: 10.1038/s41598-024-52557-8  0.328
2023 Yoo MJ, Koh J, Boatwright JL, Soltis DE, Soltis PS, Barbazuk WB, Chen S. Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae). The Plant Journal : For Cell and Molecular Biology. PMID 37997015 DOI: 10.1111/tpj.16553  0.709
2022 Skibiel AL, Koh J, Zhu N, Zhu F, Yoo MJ, Laporta J. Carry-over effects of dry period heat stress on the mammary gland proteome and phosphoproteome in the subsequent lactation of dairy cows. Scientific Reports. 12: 6637. PMID 35459770 DOI: 10.1038/s41598-022-10461-z  0.652
2021 Yu J, Gonzalez JM, Dong Z, Shan Q, Tan B, Koh J, Zhang T, Zhu N, Dufresne C, Martin GB, Chen S. Integrative Proteomic and Phosphoproteomic Analyses of Pattern- and Effector-Triggered Immunity in Tomato. Frontiers in Plant Science. 12: 768693. PMID 34925416 DOI: 10.3389/fpls.2021.768693  0.329
2020 Mona M, Kobeissy F, Park YJ, Miller R, Saleh W, Koh J, Yoo MJ, Chen S, Cha S. Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland Progenitors. International Journal of Molecular Sciences. 21. PMID 33260559 DOI: 10.3390/ijms21239055  0.661
2020 Zhang T, Schneider JD, Lin C, Koh J, Chen S. Proteomics data of SNF1-related protein kinase 2.4 interacting proteins revealed by immunoprecipitation-mass spectrometry. Data in Brief. 32: 106326. PMID 33005707 DOI: 10.1016/J.Dib.2020.106326  0.381
2020 Feng G, Yoo MJ, Davenport R, Boatwright JL, Koh J, Chen S, Barbazuk WB. Jasmonate induced alternative splicing responses in . Plant Direct. 4: e00245. PMID 32875268 DOI: 10.1002/pld3.245  0.665
2019 Simmons DBD, Cowie AM, Koh J, Sherry JP, Martyniuk CJ. Hepatic proteome network data in zebrafish () liver following dieldrin exposure. Data in Brief. 25: 104351. PMID 31453304 DOI: 10.1016/J.Dib.2019.104351  0.301
2019 Simmons DB, Cowie AM, Koh J, Sherry JP, Martyniuk CJ. Label-free and iTRAQ proteomics analysis in the liver of zebrafish (Danio rerio) following dietary exposure to the organochlorine pesticide dieldrin. Journal of Proteomics. PMID 31022476 DOI: 10.1016/J.Jprot.2019.04.012  0.352
2018 Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB. A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. Genetics. PMID 30213855 DOI: 10.1534/Genetics.118.301564  0.726
2018 Ma T, Yoo MJ, Zhang T, Liu L, Koh J, Song WY, Harmon AC, Sha W, Chen S. Characterization of thiol-based redox modifications of SNF1-related protein kinase 2.6-2C. Febs Open Bio. 8: 628-645. PMID 29632815 DOI: 10.1002/2211-5463.12401  0.66
2018 Fountain JC, Koh J, Yang L, Pandey MK, Nayak SN, Bajaj P, Zhuang WJ, Chen ZY, Kemerait RC, Lee RD, Chen S, Varshney RK, Guo B. Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Scientific Reports. 8: 3430. PMID 29467403 DOI: 10.1038/S41598-018-21653-X  0.367
2017 Ahn SJ, Gu T, Koh J, Rice KC. Remodeling of the Streptococcus mutans proteome in response to LrgAB and external stresses. Scientific Reports. 7: 14063. PMID 29070798 DOI: 10.1038/S41598-017-14324-W  0.384
2017 Cowie AM, Sarty KI, Mercer A, Koh J, Kidd KA, Martyniuk CJ. The pesticide dieldrin disrupts proteins related to oxidative respiration and mitochondrial stress in the central nervous system. Data in Brief. 11: 628-633. PMID 28367483 DOI: 10.1016/J.Dib.2017.03.008  0.407
2017 Cowie AM, Sarty KI, Mercer A, Koh J, Kidd KA, Martyniuk CJ. Molecular networks related to the immune system and mitochondria are targets for the pesticide dieldrin in the zebrafish (Danio rerio) central nervous system. Journal of Proteomics. PMID 28192238 DOI: 10.1016/J.Jprot.2017.02.003  0.355
2017 Park YJ, Koh J, Kwon JT, Park YS, Yang L, Cha S. Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes. Plos One. 12: e0169677. PMID 28158262 DOI: 10.1371/Journal.Pone.0169677  0.35
2016 Zhang M, Koh J, Liu L, Shao Z, Liu H, Hu S, Zhu N, Dufresne CP, Chen S, Wang Q. Critical Role of COI1-Dependent Jasmonate Pathway in AAL toxin induced PCD in Tomato Revealed by Comparative Proteomics. Scientific Reports. 6: 28451. PMID 27324416 DOI: 10.1038/Srep28451  0.396
2016 Yu B, Li J, Koh J, Dufresne C, Yang N, Qi S, Zhang Y, Ma C, Duong BV, Chen S, Li H. Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stress. Journal of Proteomics. PMID 27233743 DOI: 10.1016/J.Jprot.2016.04.011  0.387
2016 Goncalves EC, Koh J, Zhu N, Yoo MJ, Chen S, Matsuo T, Johnson JV, Rathinasabapathi B. Nitrogen starvation-induced triacylglycerol accumulation in the green algae: Evidence for a role for ROC40, a transcription factor involved in circadian rhythm. The Plant Journal : For Cell and Molecular Biology. PMID 26920093 DOI: 10.1111/Tpj.13144  0.703
2015 Koh J, Chen G, Yoo MJ, Zhu N, Dufresne D, Erickson JE, Shao H, Chen S. Comparative Proteomic Analysis of Brassica napus in Response to Drought Stress. Journal of Proteome Research. PMID 26086353 DOI: 10.1021/Pr501323D  0.71
2015 Li H, Pan Y, Zhang Y, Wu C, Ma C, Yu B, Zhu N, Koh J, Chen S. Salt stress response of membrane proteome of sugar beet monosomic addition line M14. Journal of Proteomics. PMID 25845583 DOI: 10.1016/J.Jprot.2015.03.025  0.393
2015 Hu G, Koh J, Yoo MJ, Chen S, Wendel JF. Gene-expression novelty in allopolyploid cotton: a proteomic perspective. Genetics. 200: 91-104. PMID 25735302 DOI: 10.1534/Genetics.115.174367  0.718
2015 Ferl RJ, Koh J, Denison F, Paul AL. Spaceflight induces specific alterations in the proteomes of Arabidopsis. Astrobiology. 15: 32-56. PMID 25517942 DOI: 10.1089/Ast.2014.1210  0.418
2015 Ji W, Koh J, Li S, Zhu N, Dufresne CP, Zhao X, Chen S, Li J. Quantitative proteomics reveals an important role of GsCBRLK in salt stress response of soybean Plant and Soil. 1-20. DOI: 10.1007/S11104-015-2782-0  0.377
2014 Park YJ, Koh J, Gauna AE, Chen S, Cha S. Identification of regulatory factors for mesenchymal stem cell-derived salivary epithelial cells in a co-culture system. Plos One. 9: e112158. PMID 25402494 DOI: 10.1371/Journal.Pone.0112158  0.318
2014 Yan H, Yoo MJ, Koh J, Liu L, Chen Y, Acikgoz D, Wang Q, Chen S. Molecular reprogramming of Arabidopsis in response to perturbation of jasmonate signaling. Journal of Proteome Research. 13: 5751-66. PMID 25311705 DOI: 10.1021/Pr500739V  0.71
2014 Hu G, Koh J, Yoo MJ, Pathak D, Chen S, Wendel JF. Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta. 240: 1237-51. PMID 25156487 DOI: 10.1007/S00425-014-2146-7  0.712
2013 Yang L, Zhang Y, Zhu N, Koh J, Ma C, Pan Y, Yu B, Chen S, Li H. Proteomic analysis of salt tolerance in sugar beet monosomic addition line M14. Journal of Proteome Research. 12: 4931-50. PMID 23799291 DOI: 10.1021/Pr400177M  0.451
2013 Hu G, Koh J, Yoo MJ, Grupp K, Chen S, Wendel JF. Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. The New Phytologist. 200: 570-82. PMID 23795774 DOI: 10.1111/Nph.12381  0.706
2013 Parker J, Koh J, Yoo MJ, Zhu N, Feole M, Yi S, Chen S. Quantitative proteomics of tomato defense against Pseudomonas syringae infection. Proteomics. 13: 1934-46. PMID 23533086 DOI: 10.1002/Pmic.201200402  0.68
2012 Koh J, Chen S, Zhu N, Yu F, Soltis PS, Soltis DE. Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. The New Phytologist. 196: 292-305. PMID 22861377 DOI: 10.1111/J.1469-8137.2012.04251.X  0.554
2010 Buggs RJ, Elliott NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS. Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus. The New Phytologist. 186: 175-83. PMID 20409177 DOI: 10.1111/J.1469-8137.2010.03205.X  0.52
2010 Koh J, Soltis PS, Soltis DE. Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). Bmc Genomics. 11: 97. PMID 20141639 DOI: 10.1186/1471-2164-11-97  0.556
2009 Buggs RJ, Doust AN, Tate JA, Koh J, Soltis K, Feltus FA, Paterson AH, Soltis PS, Soltis DE. Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids. Heredity. 103: 73-81. PMID 19277058 DOI: 10.1038/Hdy.2009.24  0.508
2007 Matyásek R, Tate JA, Lim YK, Srubarová H, Koh J, Leitch AR, Soltis DE, Soltis PS, Kovarík A. Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics. 176: 2509-19. PMID 17603114 DOI: 10.1534/Genetics.107.072751  0.498
2006 Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 173: 1599-611. PMID 16648586 DOI: 10.1534/Genetics.106.057646  0.538
2005 Kim S, Koh J, Yoo MJ, Kong H, Hu Y, Ma H, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators. The Plant Journal : For Cell and Molecular Biology. 43: 724-44. PMID 16115069 DOI: 10.1111/J.1365-313X.2005.02487.X  0.717
2005 Kim S, Koh J, Ma H, Hu Y, Endress PK, Hauser BA, Buzgo M, Soltis PS, Soltis DE. Sequence and Expression Studies of A‐, B‐, and E‐Class MADS‐Box Homologues in Eupomatia (Eupomatiaceae): Support for the Bracteate Origin of the Calyptra International Journal of Plant Sciences. 166: 185-198. DOI: 10.1086/427479  0.538
2005 Kim S, Koh J, Ma H, Hu Y, Endress PK, Hauser BA, Buzgo M, Soltis PS, Soltis DE. Sequence and expression studies of A-, B-, and E-class MADS-box homologues in Eupomatia (Eupomatiaceae): Support for the bracteate origin of the calyptra International Journal of Plant Sciences. 166: 185-198.  0.378
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