Stefano Gustincich - Related publications

Affiliations: 
SISSA, Trieste, Trieste, Friuli-Venezia Giulia, Italy 
Area:
Neurobiology - Neurodegenerative Diseases
Website:
http://www.sissa.it/nb/Gustincich.htm
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Nadal-Ribelles M, Islam S, Wei W, Latorre P, Nguyen M, de Nadal E, Posas F, Steinmetz LM. Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations. Nature Microbiology. PMID 30718850 DOI: 10.1038/s41564-018-0346-9   
2019 Majer A, Medina SJ, Sorensen D, Martin MJ, Frost KL, Phillipson C, Manguiat K, Booth SA. The cell type resolved mouse transcriptome in neuron-enriched brain tissues from the hippocampus and cerebellum during prion disease. Scientific Reports. 9: 1099. PMID 30705335 DOI: 10.1038/s41598-018-37715-z   
2019 Saint M, Bertaux F, Tang W, Sun XM, Game L, Köferle A, Bähler J, Shahrezaei V, Marguerat S. Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation. Nature Microbiology. PMID 30718845 DOI: 10.1038/s41564-018-0330-4   
2019 Savell KE, Bach SV, Zipperly ME, Revanna JS, Goska NA, Tuscher JJ, Duke CG, Sultan FA, Burke JN, Williams D, Ianov L, Day JJ. A Neuron-Optimized CRISPR/dCas9 Activation System for Robust and Specific Gene Regulation. Eneuro. 6. PMID 30863790 DOI: 10.1523/ENEURO.0495-18.2019   
2019 Potter AS, Steven Potter S. Dissociation of Tissues for Single-Cell Analysis. Methods in Molecular Biology (Clifton, N.J.). 1926: 55-62. PMID 30742262 DOI: 10.1007/978-1-4939-9021-4_5   
2019 Ntranos V, Yi L, Melsted P, Pachter L. A discriminative learning approach to differential expression analysis for single-cell RNA-seq. Nature Methods. PMID 30664774 DOI: 10.1038/s41592-018-0303-9   
2019 Tarca AL, Romero R, Xu Z, Gomez-Lopez N, Erez O, Hsu CD, Hassan SS, Carey VJ. Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition. Scientific Reports. 9: 848. PMID 30696862 DOI: 10.1038/s41598-018-36649-w   
2019 Al-Allaf FA, Abduljaleel Z, Athar M, Taher MM, Khan W, Mehmet H, Colakogullari M, Apostolidou S, Bigger B, Waddington S, Coutelle C, Themis M, Al-Ahdal MN, Al-Mohanna FA, Al-Hassnan ZN, et al. Modifying inter-cistronic sequence significantly enhances IRES dependent second gene expression in bicistronic vector: Construction of optimised cassette for gene therapy of familial hypercholesterolemia. Non-Coding Rna Research. 4: 1-14. PMID 30891532 DOI: 10.1016/j.ncrna.2018.11.005   
2019 Michaels YS, Barnkob MB, Barbosa H, Baeumler TA, Thompson MK, Andre V, Colin-York H, Fritzsche M, Gileadi U, Sheppard HM, Knapp DJHF, Milne TA, Cerundolo V, Fulga TA. Precise tuning of gene expression levels in mammalian cells. Nature Communications. 10: 818. PMID 30778069 DOI: 10.1038/s41467-019-08777-y   
2019 Wang Y, Liang Z, Li H, Tao J, Sun Y, Gong Y. NSPc1 polycomb protein complex binds and cross‑talks to lncRNAs in glioma H4 cells. Oncology Reports. PMID 30720120 DOI: 10.3892/or.2019.7000   
2019 Huang R, Shu S, Liu M, Wang C, Jiang B, Jiang J, Yang C, Zhang S. Nuclear PROHIBITIN3 maintains genome integrity and cell proliferation in root meristem through MINICHROMOSOME MAINTENANCE 2. Plant Physiology. PMID 30674698 DOI: 10.1104/pp.18.01463   
2019 Johari YB, Brown AJ, Alves CS, Zhou Y, Wright CM, Estes SD, Kshirsagar R, James DC. CHO Genome Mining for Synthetic Promoter Design. Journal of Biotechnology. PMID 30703471 DOI: 10.1016/j.jbiotec.2019.01.015   
2019 Pristovsek N, Nallapereddy S, Grav LM, Hefzi H, Lewis NE, Rugbjerg P, Hansen HG, Lee GM, Andersen MR, Kildegaard HF. Systematic Evaluation of Site-Specific Recombinant Gene Expression for Programmable Mammalian Cell Engineering. Acs Synthetic Biology. PMID 30807689 DOI: 10.1021/acssynbio.8b00453   
2019 Huang D, Petrykowska HM, Miller BF, Elnitski L, Ovcharenko I. Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression. Genome Research. PMID 30886051 DOI: 10.1101/gr.247007.118   
2019 Xie S, Hon GC. Experimental and Computational Approaches for Single-Cell Enhancer Perturbation Assay. Methods in Molecular Biology (Clifton, N.J.). 1935: 203-221. PMID 30758829 DOI: 10.1007/978-1-4939-9057-3_14   
2019 Wang M, Qiu L, Ru X, Song Y, Zhang Y. Distinct isoforms of Nrf1 diversely regulate different subsets of its cognate target genes. Scientific Reports. 9: 2960. PMID 30814566 DOI: 10.1038/s41598-019-39536-0   
2019 Durif G, Modolo L, Mold JE, Lambert-Lacroix S, Picard F. Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. Bioinformatics (Oxford, England). PMID 30865271 DOI: 10.1093/bioinformatics/btz177   
2019 Behera RK, Mlynek KD, Linz MS, Brinsmade SR. A Fluorescence-based Method to Study Bacterial Gene Regulation in Infected Tissues. Journal of Visualized Experiments : Jove. PMID 30855576 DOI: 10.3791/59055   
2019 Mucenski ML, Mahoney R, Adam M, Potter AS, Potter SS. Single cell RNA-seq study of wild type and Hox9,10,11 mutant developing uterus. Scientific Reports. 9: 4557. PMID 30872674 DOI: 10.1038/s41598-019-40923-w   
2019 Yanagihara Y, Inoue K, Saeki N, Sawada Y, Yoshida S, Lee J, Iimura T, Imai Y. Zscan10 suppresses osteoclast differentiation by regulating expression of Haptoglobin. Bone. PMID 30771488 DOI: 10.1016/j.bone.2019.02.011   
2019 Biendarra-Tiegs SM, Li X, Ye D, Brandt EB, Ackerman MJ, Nelson TJ. Single-cell RNA-seq and optical electrophysiology of human induced pluripotent stem cell-derived cardiomyocytes reveal discordance between cardiac subtype-associated gene expression patterns and electrophysiological phenotypes. Stem Cells and Development. PMID 30892143 DOI: 10.1089/scd.2019.0030   
2019 Tricoire L, Cauli B, Lambolez B. Gene Expression Analysis by Multiplex Single-Cell RT-PCR. Methods in Molecular Biology (Clifton, N.J.). 1941: 139-154. PMID 30707432 DOI: 10.1007/978-1-4939-9077-1_10   
2019 Vandel J, Cassan O, Lèbre S, Lecellier CH, Bréhélin L. Probing transcription factor combinatorics in different promoter classes and in enhancers. Bmc Genomics. 20: 103. PMID 30709337 DOI: 10.1186/s12864-018-5408-0   
2019 Shefa U, Jung J. Comparative study of microarray and experimental data on Schwann cells in peripheral nerve degeneration and regeneration: big data analysis. Neural Regeneration Research. 14: 1099-1104. PMID 30762025 DOI: 10.4103/1673-5374.250632   
2019 Zhang J, Chen H, Li R, Taft DA, Yao G, Bai F, Xing J. Spatial clustering and common regulatory elements correlate with coordinated gene expression. Plos Computational Biology. 15: e1006786. PMID 30822341 DOI: 10.1371/journal.pcbi.1006786   
2019 Salazar C, Elorza AA, Cofre G, Ruiz-Hincapie P, Shirihai O, Ruiz LM. The OXPHOS supercomplex assembly factor HIG2A responds to changes in energetic metabolism and cell cycle. Journal of Cellular Physiology. PMID 30779122 DOI: 10.1002/jcp.28362   
2019 Vinogradova S, Saksena SD, Ward HN, Vigneau S, Gimelbrant AA. MaGIC: a machine learning tool set and web application for monoallelic gene inference from chromatin. Bmc Bioinformatics. 20: 106. PMID 30819107 DOI: 10.1186/s12859-019-2679-7   
2019 Carnes R, Mobley JA, Crossman DK, Liu H, Korf BR, Kesterson RA, Wallis D. Multi-Omics Profiling for NF1 Target Discovery in Neurofibromin (NF1) Deficient Cells. Proteomics. e1800334. PMID 30908848 DOI: 10.1002/pmic.201800334   
2019 Norouzi M, Pickford AR, Butt LE, Vincent HA, Callaghan AJ. Application of mRNA Arrays for the Production of mCherry Reporter-Protein Arrays for Quantitative Gene Expression Analysis. Acs Synthetic Biology. PMID 30682244 DOI: 10.1021/acssynbio.8b00266   
2019 Liu M, Guo P, An J, Guo C, Lu F, Lei Y. Genome‑wide profiling of lncRNA and mRNA expression in CRSwNP. Molecular Medicine Reports. PMID 30864741 DOI: 10.3892/mmr.2019.10005   
2019 Phillips NE, Mandic A, Omidi S, Naef F, Suter DM. Memory and relatedness of transcriptional activity in mammalian cell lineages. Nature Communications. 10: 1208. PMID 30872573 DOI: 10.1038/s41467-019-09189-8   
2019 Swanson EA, Nelson JW, Jeng S, Erspamer KJ, Yang CL, McWeeney S, Ellison DH. The salt-sensitive transcriptome of isolated kidney distal tubule cells. Physiological Genomics. PMID 30875275 DOI: 10.1152/physiolgenomics.00119.2018   
2019 Higdon LE, Schaffert S, Khatri P, Maltzman JS. Single cell immune profiling in transplantation research. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. PMID 30768832 DOI: 10.1111/ajt.15316   
2019 Román E, Coman I, Prieto D, Alonso-Monge R, Pla J. Implementation of a CRISPR-Based System for Gene Regulation in . Msphere. 4. PMID 30760608 DOI: 10.1128/mSphere.00001-19   
2019 Karbassi E, Rosa-Garrido M, Chapski DJ, Wu Y, Ren S, Wang Y, Stefani E, Vondriska TM. Direct visualization of cardiac transcription factories reveals regulatory principles of nuclear architecture during pathological remodeling. Journal of Molecular and Cellular Cardiology. PMID 30742811 DOI: 10.1016/j.yjmcc.2019.02.003   
2019 Luo Z, Rhie SK, Farnham PJ. The Enigmatic HOX Genes: Can We Crack Their Code? Cancers. 11. PMID 30866492 DOI: 10.3390/cancers11030323   
2019 López-Fernández H, Blanco-Míguez A, Fdez-Riverola F, Sánchez B, Lourenço A. DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. Computers in Biology and Medicine. 107: 197-205. PMID 30849608 DOI: 10.1016/j.compbiomed.2019.02.021   
2019 Cai C, Wang W, Tu Z. Aberrantly DNA Methylated-Differentially Expressed Genes and Pathways in Hepatocellular Carcinoma. Journal of Cancer. 10: 355-366. PMID 30719129 DOI: 10.7150/jca.27832   
2019 Billingsley KJ, Lättekivi F, Planken A, Reimann E, Kurvits L, Kadastik-Eerme L, Kasterpalu KM, Bubb VJ, Quinn JP, Kõks S, Taba P. Analysis of repetitive element expression in the blood and skin of patients with Parkinson's disease identifies differential expression of satellite elements. Scientific Reports. 9: 4369. PMID 30867520 DOI: 10.1038/s41598-019-40869-z   
2019 Hao K, Lin B, Nian F, Gao X, Wei Z, Luo G, Lu Y, Lan M, Yang J, Wu G. RNA-seq analysis of the response of plant-pathogenic oomycete Phytophthora parasitica to the fungicide dimethomorph. Revista Argentina De Microbiologia. PMID 30670299 DOI: 10.1016/j.ram.2018.08.007   
2019 Xu TP, Ma P, Wang WY, Shuai Y, Wang YF, Yu T, Xia R, Shu YQ. KLF5 and MYC modulated LINC00346 contributes to gastric cancer progression through acting as a competing endogeous RNA and indicates poor outcome. Cell Death and Differentiation. PMID 30770877 DOI: 10.1038/s41418-018-0236-y   
2019 Hochane M, van den Berg PR, Fan X, Bérenger-Currias N, Adegeest E, Bialecka M, Nieveen M, Menschaart M, Chuva de Sousa Lopes SM, Semrau S. Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. Plos Biology. 17: e3000152. PMID 30789893 DOI: 10.1371/journal.pbio.3000152   
2019 Song KH, Kwak CH, Chung TW, Ha SH, Park JY, Ha KT, Cho SH, Lee YC, Kim CH. Intestine specific regulation of pig cytidine-5'-monophospho-N-acetylneuraminic acid hydroxylase gene for N-glycolylneuraminic acid biosynthesis. Scientific Reports. 9: 4292. PMID 30862964 DOI: 10.1038/s41598-019-40522-9   
2019 Han R, Wang X, Wang X, Guo Y, Li D, Li G, Wang Y, Kang X, Li Z. Chicken ZNF764L gene: mRNA expression profile, alternative splicing analysis and association analysis between first exon indel mutation and economic traits. Gene. PMID 30769141 DOI: 10.1016/j.gene.2019.02.010   
2019 Dong M, Jiang Y. Single-Cell Allele-Specific Gene Expression Analysis. Methods in Molecular Biology (Clifton, N.J.). 1935: 155-174. PMID 30758826 DOI: 10.1007/978-1-4939-9057-3_11   
2019 Fang Z, Weng C, Li H, Tao R, Mai W, Liu X, Lu L, Lai S, Duan Q, Alvarez C, Arvan P, Wynshaw-Boris A, Li Y, Pei Y, Jin F, et al. Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key β-Cell-Specific Disease Genes. Cell Reports. 26: 3132-3144.e7. PMID 30865899 DOI: 10.1016/j.celrep.2019.02.043   
2019 Larsson AJM, Johnsson P, Hagemann-Jensen M, Hartmanis L, Faridani OR, Reinius B, Segerstolpe Å, Rivera CM, Ren B, Sandberg R. Genomic encoding of transcriptional burst kinetics. Nature. 565: 251-254. PMID 30602787 DOI: 10.1038/s41586-018-0836-1   
2019 Zhou XS, Chen C, Li TH, Tang JJ, Zhu BJ, Wei GQ, Qian C, Liu CL, Wang L. A QM protein from Bombyx mori negatively regulates prophenoloxidase activation and melanization by interacting with Jun protein. Insect Molecular Biology. PMID 30737848 DOI: 10.1111/imb.12573   
2019 Cunningham-Bryant D, Sun J, Fernandez B, Zalatan J. CRISPR-Cas-Mediated Chemical Control of Transcriptional Dynamics in Yeast. Chembiochem : a European Journal of Chemical Biology. PMID 30710419 DOI: 10.1002/cbic.201800823   
2019 Schall PZ, Ruebel ML, Midic U, VandeVoort CA, Latham KE. Temporal patterns of gene regulation and upstream regulators contributing to major developmental transitions during Rhesus macaque preimplantation development. Molecular Human Reproduction. PMID 30698740 DOI: 10.1093/molehr/gaz001