Tim Thomas - Related publications

Affiliations: 
Development and Neurobiology Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Luppino JM, Joyce EF. Single cell analysis pushes the boundaries of TAD formation and function. Current Opinion in Genetics & Development. 61: 25-31. PMID 32302920 DOI: 10.1016/j.gde.2020.03.005   
2020 Rogers AK, Phillips CM. RNAi pathways repress reprogramming of C. elegans germ cells during heat stress. Nucleic Acids Research. PMID 32187370 DOI: 10.1093/nar/gkaa174   
2020 Field A, Adelman K. Evaluating Enhancer Function and Transcription. Annual Review of Biochemistry. PMID 32197056 DOI: 10.1146/annurev-biochem-011420-095916   
2020 Simon R, Wiegreffe C, Britsch S. Bcl11 Transcription Factors Regulate Cortical Development and Function. Frontiers in Molecular Neuroscience. 13: 51. PMID 32322190 DOI: 10.3389/fnmol.2020.00051   
2020 Gao L, Yang M, Wei Z, Gu M, Yang L, Bai C, Wu Y, Li G. Mutant Promotes Myogenic Differentiation by Increasing Demethylase Expression via the SMAD2/SMAD3 Pathway. International Journal of Biological Sciences. 16: 1324-1334. PMID 32210722 DOI: 10.7150/ijbs.40551   
2020 Karia D, Gilbert RCG, Biasutto AJ, Porcher C, Mancini EJ. The histone H3K4 demethylase JARID1A directly interacts with haematopoietic transcription factor GATA1 in erythroid cells through its second PHD domain. Royal Society Open Science. 7: 191048. PMID 32218938 DOI: 10.1098/rsos.191048   
2020 Berenguer M, Meyer KF, Yin J, Duester G. Discovery of genes required for body axis and limb formation by global identification of retinoic acid-regulated epigenetic marks. Plos Biology. 18: e3000719. PMID 32421711 DOI: 10.1371/journal.pbio.3000719   
2020 Dompe C, Janowicz K, Hutchings G, Moncrieff L, Jankowski M, Nawrocki MJ, Józkowiak M, Mozdziak P, Petitte J, Shibli JA, Dyszkiewicz-Konwińska M, Bruska M, Piotrowska-Kempisty H, Kempisty B, Nowicki M. Epigenetic Research in Stem Cell Bioengineering-Anti-Cancer Therapy, Regenerative and Reconstructive Medicine in Human Clinical Trials. Cancers. 12. PMID 32326172 DOI: 10.3390/cancers12041016   
2020 Wimalasena VK, Wang T, Sigua LH, Durbin AD, Qi J. Using Chemical Epigenetics to Target Cancer. Molecular Cell. PMID 32407673 DOI: 10.1016/j.molcel.2020.04.023   
2020 Bosch PJ, Peek SL, Smolikove S, Weiner JA. Akirin proteins in development and disease: critical roles and mechanisms of action. Cellular and Molecular Life Sciences : Cmls. PMID 32361777 DOI: 10.1007/s00018-020-03531-w   
2020 Fitz J, Neumann T, Steininger M, Wiedemann EM, Garcia AC, Athanasiadis A, Schoeberl UE, Pavri R. Spt5-mediated enhancer transcription directly couples enhancer activation with physical promoter interaction. Nature Genetics. PMID 32251373 DOI: 10.1038/s41588-020-0605-6   
2020 Newton AH, Pask AJ. CHD9 upregulates RUNX2 and has a potential role in skeletal evolution. Bmc Molecular and Cell Biology. 21: 27. PMID 32295522 DOI: 10.1186/s12860-020-00270-5   
2020 Manouchehri N, Hussain RZ, Cravens PD, Doelger R, Greenberg BM, Okuda DT, Forsthuber TG, Eagar TN, Stüve O. Limitations of cell-lineage-specific non-dynamic gene recombination in CD11c.CreITGA4 mice. Journal of Neuroimmunology. 344: 577245. PMID 32335319 DOI: 10.1016/j.jneuroim.2020.577245   
2020 McGrath-Morrow SA, Ndeh R, Helmin KA, Khuder B, Rothblum-Oviatt C, Collaco JM, Wright J, Reyfman PA, Lederman HM, Singer BD. DNA methylation and gene expression signatures are associated with ataxia-telangiectasia phenotype. Scientific Reports. 10: 7479. PMID 32366930 DOI: 10.1038/s41598-020-64514-2   
2020 Carnesecchi J, Sigismondo G, Domsch K, Baader CEP, Rafiee MR, Krijgsveld J, Lohmann I. Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity. Nature Communications. 11: 1388. PMID 32170121 DOI: 10.1038/s41467-020-15223-x   
2020 Wu X, Yang Y, Zhong C, Guo Y, Wei T, Li S, Lin H, Liu X. Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper (). International Journal of Molecular Sciences. 21. PMID 32316525 DOI: 10.3390/ijms21082800   
2020 Li L, Huang K, Zhao H, Chen B, Ye Q, Yue J. CDK1-PLK1/SGOL2/ANLN pathway mediating abnormal cell division in cell cycle may be a critical process in hepatocellular carcinoma. Cell Cycle (Georgetown, Tex.). 1-17. PMID 32275843 DOI: 10.1080/15384101.2020.1749471   
2020 Mouawad R, Himadewi P, Kadiyala D, Arnosti DN. Selective repression of the Drosophila cyclin B promoter by retinoblastoma and E2F proteins. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 1863: 194549. PMID 32275964 DOI: 10.1016/j.bbagrm.2020.194549   
2020 Sussman RT, Rokita JL, Huang K, Raman P, Rathi KS, Martinez D, Bosse KR, Lane M, Hart LS, Bhatti T, Pawel B, Maris JM. CAMKV Is a Candidate Immunotherapeutic Target in Amplified Neuroblastoma. Frontiers in Oncology. 10: 302. PMID 32211329 DOI: 10.3389/fonc.2020.00302   
2020 Smith J, Sen S, Weeks RJ, Eccles MR, Chatterjee A. Promoter DNA Hypermethylation and Paradoxical Gene Activation. Trends in Cancer. 6: 392-406. PMID 32348735 DOI: 10.1016/j.trecan.2020.02.007   
2020 Nieto CA, Vargas Garcia CA, Sanchez C, Arias-Castro JC, Pedraza JM. Correlation between protein concentration and bacterial cell size can reveal strategies of gene expression. Physical Biology. PMID 32289764 DOI: 10.1088/1478-3975/ab891c   
2020 Song S, Yu KY, Zhang T, Lu R, Pan SQ, Zhou MM, Cheng Y. [Expression analysis of / double genes in transfected goat mammary epithelial cells]. Yi Chuan = Hereditas. 42: 380-387. PMID 32312707 DOI: 10.16288/j.yczz.19-299   
2020 Yin L, Banerjee S, Fan J, He J, Lu X, Xie H. Epigenetic regulation of neuronal cell specification inferred with single cell "Omics" data. Computational and Structural Biotechnology Journal. 18: 942-952. PMID 32368329 DOI: 10.1016/j.csbj.2020.04.007   
2020 Jorgensen V, Chen J, Vander Wende H, Harris D, McCarthy A, Breznak S, Wong-Deyrup SW, Chen Y, Rangan P, Brar GA, Sawyer EM, Chan LY, Ünal E. Tunable Transcriptional Interference at the Endogenous Alcohol Dehydrogenase Gene Locus in . G3 (Bethesda, Md.). PMID 32213532 DOI: 10.1534/g3.119.400937   
2020 Warman C, Panda K, Vejlupkova Z, Hokin S, Unger-Wallace E, Cole RA, Chettoor AM, Jiang D, Vollbrecht E, Evans MMS, Slotkin RK, Fowler JE. High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. Plos Genetics. 16: e1008462. PMID 32236090 DOI: 10.1371/journal.pgen.1008462   
2020 Lu D, Sin HS, Lu C, Fuller MT. Developmental regulation of cell type-specific transcription by novel promoter-proximal sequence elements. Genes & Development. PMID 32217666 DOI: 10.1101/gad.335331.119   
2020 Hou X, Jiang M, Zhou J, Song S, Zhao F, Lin Y. Examination of methionine stimulation of gene expression in dairy cow mammary epithelial cells using RNA-sequencing. The Journal of Dairy Research. 1-6. PMID 32375921 DOI: 10.1017/S0022029920000199   
2020 Hoxha S, Shepard A, Troutman S, Diao H, Doherty JR, Janiszewska M, Witwicki RM, Pipkin ME, Ja WW, Kareta MS, Kissil JL. YAP-mediated recruitment of YY1 and EZH2 represses transcription of key cell cycle regulators. Cancer Research. PMID 32409309 DOI: 10.1158/0008-5472.CAN-19-2415   
2020 Anwar M, Malhotra P, Kochhar R, Bhatia A, Mahmood A, Singh R, Mahmood S. TCF 4 tumor suppressor: a molecular target in the prognosis of sporadic colorectal cancer in humans. Cellular & Molecular Biology Letters. 25: 24. PMID 32265994 DOI: 10.1186/s11658-020-00217-w   
2020 Christensen EL, Beasley A, Radchuk J, Mielko ZE, Preston E, Stuckett S, Murray JI, Hudson ML. /neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Nervous System. G3 (Bethesda, Md.). PMID 32273286 DOI: 10.1534/g3.120.401126   
2020 Feng W, Chen S, Wang J, Wang X, Chen H, Ning W, Zhang Y. DHX33 recruits Gadd45a to cause DNA demethylation and regulate a subset of gene transcription. Molecular and Cellular Biology. PMID 32312884 DOI: 10.1128/MCB.00460-19   
2020 Wang Y, Wang Q, Chen S, Hu Y, Yu C, Liu R, Wang Z. Screening of Long Noncoding RNAs Induced by Radiation Using Microarray. Dose-Response : a Publication of International Hormesis Society. 18: 1559325820916304. PMID 32341682 DOI: 10.1177/1559325820916304   
2020 Rambout X, Cho H, Maquat LE. Transcriptional Coactivator PGC-1α Binding to Newly Synthesized RNA via CBP80: A Nexus for Co- and Posttranscriptional Gene Regulation. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32295928 DOI: 10.1101/sqb.2019.84.040212   
2020 Shao W, Cai Q, Tong SM, Ying SH, Feng MG. Nuclear Ssr4 Is Required for the and Asexual Cycles and Global Gene Activity of Beauveria bassiana. Msystems. 5. PMID 32317391 DOI: 10.1128/mSystems.00677-19   
2020 Jia X, Mo Z, Zhao Q, Bao T, Xu W, Gao Z, Peng L, Zhu X. Transcriptome alterations in HepG2 cells induced by shRNA knockdown and overexpression of gene. Bioscience, Biotechnology, and Biochemistry. 1-9. PMID 32326855 DOI: 10.1080/09168451.2020.1756733   
2020 Zhang X, Chen M, Liu X, Zhang L, Ding X, Guo Y, Li X, Guo H. A novel lncRNA, lnc403, involved in bovine skeletal muscle moygenesis by mediating KRAS/Myf6. Gene. 144706. PMID 32387386 DOI: 10.1016/j.gene.2020.144706   
2020 Han X, Yang J, Zeng F, Weng J, Zhang Y, Peng Q, Shen L, Ding S, Liu K, Gao Y. Programmable Synthetic Protein Circuits for the Identification and Suppression of Hepatocellular Carcinoma. Molecular Therapy Oncolytics. 17: 70-82. PMID 32322664 DOI: 10.1016/j.omto.2020.03.008   
2020 Ramanand SG, Chen Y, Yuan J, Daescu K, Lambros M, Houlahan KE, Carreira S, Yuan W, Baek G, Sharp A, Paschalis A, Kanchwala M, Gao Y, Aslam A, Safdar N, et al. The landscape of RNA polymerase II associated chromatin interactions in prostate cancer. The Journal of Clinical Investigation. PMID 32343676 DOI: 10.1172/JCI134260   
2020 Yarrington RM, Yu Y, Yan C, Bai L, Stillman DJ. Independent Recruitment of the Mediator Tail Module to the Promoter Suggests Mediator Core Limits Coactivator Recruitment in . Genetics. PMID 32327563 DOI: 10.1534/genetics.120.303254   
2020 Xing L, Qi S, Zhou H, Zhang W, Zhang C, Ma W, Zhang Q, Shah K, Han M, Zhao J. Epigenomic regulatory mechanism in vegetative phase transition of Malus hupehensis. Journal of Agricultural and Food Chemistry. PMID 32227940 DOI: 10.1021/acs.jafc.0c00478   
2020 Somerville TDD, Xu Y, Wu XS, Maia-Silva D, Hur SK, de Almeida LMN, Preall JB, Koo PK, Vakoc CR. ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 32385160 DOI: 10.1073/pnas.1921484117   
2020 Ahmadzadeh E, Bayin NS, Qu X, Singh A, Madisen L, Stephen D, Zeng H, Joyner AL, Rosello-Diez A. A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression. Development (Cambridge, England). PMID 32366677 DOI: 10.1242/dev.186650   
2020 Yu B, Wang Y, Zhou H, Li P, Liu C, Chen S, Peng Y, Zhang Y, Teng S. Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced ABI5 transcription in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 32314488 DOI: 10.1111/tpj.14777   
2020 Kanakoglou DS, Michalettou TD, Vasileiou C, Gioukakis E, Maneta D, Kyriakidis KV, Georgakilas AG, Michalopoulos I. Effects of High-Dose Ionizing Radiation in Human Gene Expression: A Meta-Analysis. International Journal of Molecular Sciences. 21. PMID 32178397 DOI: 10.3390/ijms21061938   
2020 Zeng X, Lee HK, Wang C, Achikeh P, Liu C, Hennighausen L. The interdependence of mammary-specific super-enhancers and their native promoters facilitates gene activation during pregnancy. Experimental & Molecular Medicine. PMID 32321991 DOI: 10.1038/s12276-020-0425-x   
2020 Kim S, Park J, Kim T, Lee JS. The functional study of human proteins using humanized yeast. Journal of Microbiology (Seoul, Korea). 58: 343-349. PMID 32342338 DOI: 10.1007/s12275-020-0136-y   
2020 Xiao Y, Lamar JM. Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter. Journal of Visualized Experiments : Jove. PMID 32281984 DOI: 10.3791/60582   
2020 Romano O, Petiti L, Felix T, Meneghini V, Portafax M, Antoniani C, Amendola M, Bicciato S, Peano C, Miccio A. GATA Factor-Mediated Gene Regulation in Human Erythropoiesis. Iscience. 23: 101018. PMID 32283524 DOI: 10.1016/j.isci.2020.101018   
2020 Myung SH, Park J, Han JH, Kim TH. Development of the mammalian expression vector system that can be induced by IPTG and/or lactose. Journal of Microbiology and Biotechnology. PMID 32423185 DOI: 10.4014/jmb.2003.03030   
2020 Lang L, Teng Y. Using Genome-Editing Tools to Develop a Novel In Situ Coincidence Reporter Assay for Screening ATAD3A Transcriptional Inhibitors. Methods in Molecular Biology (Clifton, N.J.). 2138: 159-166. PMID 32219745 DOI: 10.1007/978-1-0716-0471-7_8