Baihan Lin - Related publications

Affiliations: 
2013- Applied Mathematics, Psychology, Computer Science University of Washington, Seattle, Seattle, WA 
 2017- Systems Biology, Neuroscience, Statistics Columbia University, New York, NY 
Area:
Computational Neuroscience, Mathematical Biology, Machine Learning, Systems & Synthetic Biology, Genomics
Website:
http://www.columbia.edu/~bl2681/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Sharov V, Rezelj VV, Galatenko VV, Titievsky A, Panov J, Chumakov K, Andino R, Vignuzzi M, Brodsky L. Intra and inter-cellular modeling of dynamic interaction between Zika virus and its naturally occurring defective viral genomes. Journal of Virology. JVI0097721. PMID 34468175 DOI: 10.1128/JVI.00977-21   
2021 Kawasaki J, Kojima S, Tomonaga K, Horie M. Hidden Viral Sequences in Public Sequencing Data and Warning for Future Emerging Diseases. Mbio. e0163821. PMID 34399612 DOI: 10.1128/mBio.01638-21   
2021 Su Y, Lin T, Liu C, Cheng C, Han X, Jiang X. microRNAs, the Link Between Dengue Virus and the Host Genome. Frontiers in Microbiology. 12: 714409. PMID 34456895 DOI: 10.3389/fmicb.2021.714409   
2021 Dybas JM, Lum KK, Kulej K, Reyes ED, Lauman R, Charman M, Purman CE, Steinbock RT, Grams N, Price AM, Mendoza L, Garcia BA, Weitzman MD. Adenovirus Remodeling of the Host Proteome and Host Factors Associated with Viral Genomes. Msystems. e0046821. PMID 34463575 DOI: 10.1128/mSystems.00468-21   
2021 Vaidya NK, Bloomquist A, Perelson AS. Modeling Within-Host Dynamics of SARS-CoV-2 Infection: A Case Study in Ferrets. Viruses. 13. PMID 34452499 DOI: 10.3390/v13081635   
2021 Luo Y, Zhang M, Chen Y, Chen Y, Zhu D. Application of Human Induced Pluripotent Stem Cell-Derived Cellular and Organoid Models for COVID-19 Research. Frontiers in Cell and Developmental Biology. 9: 720099. PMID 34552930 DOI: 10.3389/fcell.2021.720099   
2021 O'Donoghue SI, Schafferhans A, Sikta N, Stolte C, Kaur S, Ho BK, Anderson S, Procter JB, Dallago C, Bordin N, Adcock M, Rost B. SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms. Molecular Systems Biology. 17: e10079. PMID 34519429 DOI: 10.15252/msb.202010079   
2021 Ferreira G, Santander A, Savio F, Guirado M, Sobrevia L, Nicolson GL. SARS-CoV-2, Zika viruses and mycoplasma: structure, pathogenesis and some treatment options in these emerging viral and bacterial infectious diseases. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 166264. PMID 34481867 DOI: 10.1016/j.bbadis.2021.166264   
2021 Serpeloni JM, Lima Neto QA, Lucio LC, Ramão A, Carvalho de Oliveira J, Gradia DF, Malheiros D, Ferrasa A, Marchi R, Figueiredo DLA, Silva WA, Ribeiro EMSF, Cólus IMS, Cavalli LR. Genome interaction of the virus and the host genes and non-coding RNAs in SARS-CoV-2 infection. Immunobiology. 226: 152130. PMID 34425415 DOI: 10.1016/j.imbio.2021.152130   
2021 De La Vega MA, Wong G, Wei H, He S, Bello A, Fausther-Bovendo H, Audet J, Tierney K, Tran K, Soule G, Racine T, Strong JE, Qiu X, Kobinger GP. Role of key infectivity parameters in the transmission of Ebola virus Makona in macaques. The Journal of Infectious Diseases. PMID 34626109 DOI: 10.1093/infdis/jiab478   
2021 Srivastava K, Singh MK. Drug repurposing in COVID-19: A review with past, present and future. Metabolism Open. 100121. PMID 34462734 DOI: 10.1016/j.metop.2021.100121   
2021 Ferren M, Favède V, Decimo D, Iampietro M, Lieberman NAP, Weickert JL, Pelissier R, Mazelier M, Terrier O, Moscona A, Porotto M, Greninger AL, Messaddeq N, Horvat B, Mathieu C. Hamster organotypic modeling of SARS-CoV-2 lung and brainstem infection. Nature Communications. 12: 5809. PMID 34608167 DOI: 10.1038/s41467-021-26096-z   
2021 Chang JT, Kaplan EH, William N, Marie A. Modeling Local Coronavirus Outbreaks. European Journal of Operational Research. PMID 34413569 DOI: 10.1016/j.ejor.2021.07.049   
2021 Ng TI, Dorr PK, Krishnan P, Cohen DE, Rhee S, Wang SX, Ruzek MC, Mensa FJ, Kati WM. Biomarkers for the clinical development of antiviral therapies. Cytometry. Part B, Clinical Cytometry. 100: 19-32. PMID 34542933 DOI: 10.1002/cyto.b.21974   
2021 Mahajan S, Choudhary S, Kumar P, Tomar S. Antiviral strategies targeting host factors and mechanisms obliging +ssRNA viral pathogens. Bioorganic & Medicinal Chemistry. 46: 116356. PMID 34416512 DOI: 10.1016/j.bmc.2021.116356   
2021 Lin SK, De Maio N, Pedergnana V, Wu CH, Thézé J, Wilson DJ, Barnes E, Ansari MA. Using host genetics to infer the global spread and evolutionary history of HCV subtype 3a. Virus Evolution. 7: veab065. PMID 34532064 DOI: 10.1093/ve/veab065   
2021 Moreira EA, Yamauchi Y, Matthias P. How Influenza Virus Uses Host Cell Pathways during Uncoating. Cells. 10. PMID 34359892 DOI: 10.3390/cells10071722   
2021 Riva L, Goellner S, Biering SB, Huang CT, Rubanov AN, Haselmann U, Warnes CM, De Jesus PD, Martin-Sancho L, Terskikh AV, Harris E, Pinkerton AB, Bartenschlager R, Chanda SK. The compound SBI-0090799 inhibits Zika virus (ZIKV) infection by blocking formation of the membranous replication compartment. Journal of Virology. JVI0099621. PMID 34468177 DOI: 10.1128/JVI.00996-21   
2021 Moulden J, Sung CYW, Brizic I, Jonjic S, Britt W. Murine Models of Central Nervous System Disease following Congenital Human Cytomegalovirus Infections. Pathogens (Basel, Switzerland). 10. PMID 34451526 DOI: 10.3390/pathogens10081062   
2021 Cao D, Ge JY, Wang Y, Oda T, Zheng YW. Hepatitis B virus infection modeling using multi-cellular organoids derived from human induced pluripotent stem cells. World Journal of Gastroenterology. 27: 4784-4801. PMID 34447226 DOI: 10.3748/wjg.v27.i29.4784   
2021 Watson RJ, Tree J, Fotheringham SA, Hall Y, Dong X, Steeds K, Gouriet J, Salguero FJ, Burton C, Pitman J, Easterbrook L, Richards KS, Burton J, Bewley K, Bruce C, et al. Dose-dependent response to infection with Ebola virus in the ferret model and evidence of viral evolution in the eye. Journal of Virology. JVI0083321. PMID 34586862 DOI: 10.1128/JVI.00833-21   
2021 Roy S, Biswas P, Ghosh P. Spatiotemporal tracing of pandemic spread from infection data. Scientific Reports. 11: 17689. PMID 34480062 DOI: 10.1038/s41598-021-97207-5   
2021 Pan X, Li X, Ning S, Zhi H. Inferring SARS-CoV-2 functional genomics from viral transcriptome with identification of potential antiviral drugs and therapeutic targets. Cell & Bioscience. 11: 171. PMID 34496960 DOI: 10.1186/s13578-021-00684-4   
2021 Pal LR, Cheng K, Nair NU, Martin-Sancho L, Sinha S, Pu Y, Riva L, Yin X, Schischlik F, Lee JS, Chanda SK, Ruppin E. Synthetic lethality-based prediction of anti-SARS-CoV-2 targets. Biorxiv : the Preprint Server For Biology. PMID 34545363 DOI: 10.1101/2021.09.14.460408   
2021 Torres MC, Martins Karl AL, Müller Pereira da Silva M, Dardenne LE, Bispo de Filippis AM. Analysis of Dengue Virus Serotype 2 Mutations Detected at the Intrahost Level in Patients with Different Clinical Outcomes. Microbiology Spectrum. e0025621. PMID 34468189 DOI: 10.1128/Spectrum.00256-21   
2021 Sharma KB, Chhabra S, Aggarwal S, Tripathi A, Banerjee A, Yadav AK, Vrati S, Kalia M. Proteomic landscape of Japanese encephalitis virus-infected fibroblasts. The Journal of General Virology. 102. PMID 34546869 DOI: 10.1099/jgv.0.001657   
2021 Hildreth JEK, Moulton JD, Alcendor DJ. Vivo-Morpholino-Based Antiviral for SARS-CoV-2: Implications for Novel Therapies in the Treatment of Acute COVID-19 Disease. Biomedicines. 9. PMID 34440222 DOI: 10.3390/biomedicines9081018   
2021 Rijsbergen LC, van Dijk LLA, Engel MFM, de Vries RD, de Swart RL. Modelling of Respiratory Virus Infections in Human Airway Epithelial Cells - A Systematic Review. Frontiers in Immunology. 12: 683002. PMID 34489934 DOI: 10.3389/fimmu.2021.683002   
2021 Näslund J, Ahlm C, Islam K, Evander M, Bucht G, Lwande OW. Emerging Mosquito-Borne Viruses Linked to and : Global Status and Preventive Strategies. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 34424778 DOI: 10.1089/vbz.2020.2762   
2021 Huang X, Glessner JT, Huang J, Zhou D, March ME, Wang H, Xia Q, Hakonarson H, Li J. Discovery of Novel Host Molecular Factors Underlying HBV/HCV Infection. Frontiers in Cell and Developmental Biology. 9: 690882. PMID 34458256 DOI: 10.3389/fcell.2021.690882   
2021 Zhang S, Amahong K, Zhang C, Li F, Gao J, Qiu Y, Zhu F. RNA-RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection. Briefings in Bioinformatics. PMID 34585235 DOI: 10.1093/bib/bbab397   
2021 Li N, Huang K, Chen Y, Huang Z, Zhang Y, Leng C, Liu Y, Shi J, Xiao S, Yao L. MicroRNA ssc-miR-124a exhibits antiviral activity against porcine reproductive and respiratory syndrome virus via suppression of host genes CD163. Veterinary Microbiology. 261: 109216. PMID 34481271 DOI: 10.1016/j.vetmic.2021.109216   
2021 Luan YY, Yin CH, Yao YM. Update Advances on C-Reactive Protein in COVID-19 and Other Viral Infections. Frontiers in Immunology. 12: 720363. PMID 34447386 DOI: 10.3389/fimmu.2021.720363   
2021 Li Z, Wu J, Zhou J, Yuan B, Chen J, Wu W, Mo L, Qu Z, Zhou F, Dong Y, Huang K, Liu Z, Wang T, Symmes D, Gu J, et al. A Vimentin-Targeting Oral Compound with Host-Directed Antiviral and Anti-Inflammatory Actions Addresses Multiple Features of COVID-19 and Related Diseases. Mbio. e0254221. PMID 34634931 DOI: 10.1128/mBio.02542-21   
2021 Manning JE, Duffy PE, Esposito D, Sadtler K. Material strategies and considerations for serologic testing of global infectious diseases. Mrs Bulletin. 1-5. PMID 34539056 DOI: 10.1557/s43577-021-00167-4   
2021 Li H, Sun B, Jiang S, Sun L. Cytokines Induced by : Profile and Role in Antibacterial Immunity. Biomolecules. 11. PMID 34439908 DOI: 10.3390/biom11081242   
2021 Kim Y, Latz CA, DeCarlo CS, Lee S, Png CYM, Kibrik P, Sung E, Alabi O, Dua A. Relationship between blood type and outcomes following COVID-19 infection. Seminars in Vascular Surgery. 34: 125-131. PMID 34642032 DOI: 10.1053/j.semvascsurg.2021.05.005   
2021 Pampalakis G, Zingkou E, Panagiotidis C, Sotiropoulou G. Kallikreins emerge as new regulators of viral infections. Cellular and Molecular Life Sciences : Cmls. PMID 34459952 DOI: 10.1007/s00018-021-03922-7   
2021 Borkenhagen LK, Allen MW, Runstadler JA. Influenza Virus Genotype to Phenotype Predictions Through Machine Learning: A Systematic Review. Emerging Microbes & Infections. 1-58. PMID 34498543 DOI: 10.1080/22221751.2021.1978824   
2021 Rathakrishnan A, Reis AL, Goatley LC, Moffat K, Dixon LK. Deletion of the K145R and DP148R Genes from the Virulent ASFV Georgia 2007/1 Isolate Delays the Onset, but Does Not Reduce Severity, of Clinical Signs in Infected Pigs. Viruses. 13. PMID 34452339 DOI: 10.3390/v13081473   
2021 Suryawanshi SY, Priya S, Sinha SS, Soni S, Haidry N, Verma S, Singh S. Dynamic profile and clinical implications of hematological and immunological parameters in COVID-19 patients. A retrospective study. Journal of Family Medicine and Primary Care. 10: 2518-2523. PMID 34568129 DOI: 10.4103/jfmpc.jfmpc_2400_20   
2021 Anderson DE, Cui J, Ye Q, Huang B, Tan Y, Jiang C, Zu W, Gong J, Liu W, Kim SY, Yan BG, Sigmundsson K, Lim XF, Ye F, Niu P, et al. Orthogonal genome-wide screens of bat cells identify MTHFD1 as a target of broad antiviral therapy. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34544865 DOI: 10.1073/pnas.2104759118   
2021 de Jong LC, Crnko S, Ten Broeke T, Bovenschen N. Noncytotoxic functions of killer cell granzymes in viral infections. Plos Pathogens. 17: e1009818. PMID 34529743 DOI: 10.1371/journal.ppat.1009818   
2021 Paulsson-Habegger L, Snabaitis AK, Wren SP. Enzyme inhibition as a potential therapeutic strategy to treat COVID-19 infection. Bioorganic & Medicinal Chemistry. 48: 116389. PMID 34543844 DOI: 10.1016/j.bmc.2021.116389   
2021 Cockrell C, An G. Comparative Computational Modeling of the Bat and Human Immune Response to Viral Infection with the Comparative Biology Immune Agent Based Model. Viruses. 13. PMID 34452484 DOI: 10.3390/v13081620   
2021 Wang Y, Wang P, Qin J. Microfluidic Organs-on-a-Chip for Modeling Human Infectious Diseases. Accounts of Chemical Research. PMID 34459199 DOI: 10.1021/acs.accounts.1c00411   
2021 Elkaranshawy HA, Ezzat HM, Ibrahim NN. Lyapunov function and global asymptotic stability for a new multiscale viral dynamics model incorporating the immune system response: Implemented upon HCV. Plos One. 16: e0257975. PMID 34637445 DOI: 10.1371/journal.pone.0257975   
2021 Balaji H, Demers I, Wuerdemann N, Schrijnder J, Kremer B, Klussmann JP, Huebbers CU, Speel EM. Causes and Consequences of HPV Integration in Head and Neck Squamous Cell Carcinomas: State of the Art. Cancers. 13. PMID 34439243 DOI: 10.3390/cancers13164089   
2021 Salameh BS, Basha S, Abdallah J, Basha W. Early perception, behavior, knowledge, and preventive practices related to COVID-19 among Palestinians. Global Health Promotion. 17579759211035092. PMID 34510988 DOI: 10.1177/17579759211035092   
2021 Jacobson TB, Callaghan MM, Amador-Noguez D. Hostile Takeover: How Viruses Reprogram Prokaryotic Metabolism. Annual Review of Microbiology. PMID 34348026 DOI: 10.1146/annurev-micro-060621-043448