Susan A. Gerbi - Publications

Affiliations: 
Biology Brown University, Providence, RI 
Area:
Initiation of DNA Replication, Ribosome Structure, Evolution and Biogenesis
Website:
http://research.brown.edu/research/profile.php?id=1100924174

85 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yamamoto Y, Gustafson EA, Foulk MS, Smith HS, Gerbi SA. Anatomy and evolution of a DNA replication origin. Chromosoma. PMID 34254172 DOI: 10.1007/s00412-021-00756-x  0.332
2018 Yamamoto Y, Gerbi SA. Making ends meet: targeted integration of DNA fragments by genome editing. Chromosoma. PMID 30003320 DOI: 10.1007/S00412-018-0677-6  0.402
2018 Gerbi SA. Bundling up DNA. Elife. 7. PMID 29771237 DOI: 10.7554/Elife.37234  0.388
2017 Gerbi SA. Treasure Your Exceptions: An Interview with 2017 George Beadle Award Recipient Susan A. Gerbi. Genetics. 207: 1215-1217. PMID 29203696 DOI: 10.1534/Genetics.117.300398  0.397
2015 Doris SM, Smith DR, Beamesderfer JN, Raphael BJ, Nathanson JA, Gerbi SA. Universal and domain-specific sequences in 23S-28S ribosomal RNA identified by computational phylogenetics. Rna (New York, N.Y.). 21: 1719-30. PMID 26283689 DOI: 10.1261/Rna.051144.115  0.651
2015 Gerbi SA. Beginning at the end: DNA replication within the telomere. The Journal of Cell Biology. 210: 177-9. PMID 26195663 DOI: 10.1083/Jcb.201506078  0.382
2015 Yamamoto Y, Bliss J, Gerbi SA. Whole Organism Genome Editing: Targeted Large DNA Insertion via ObLiGaRe Nonhomologous End-Joining in Vivo Capture. G3 (Bethesda, Md.). 5: 1843-7. PMID 26139843 DOI: 10.1534/G3.115.019901  0.355
2015 Urban JM, Foulk MS, Casella C, Gerbi SA. The hunt for origins of DNA replication in multicellular eukaryotes. F1000prime Reports. 7: 30. PMID 25926981 DOI: 10.12703/P7-30  0.423
2015 Foulk MS, Urban JM, Casella C, Gerbi SA. Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins. Genome Research. 25: 725-35. PMID 25695952 DOI: 10.1101/Gr.183848.114  0.426
2013 Liew GM, Foulk MS, Gerbi SA. The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 345-60. PMID 23737076 DOI: 10.1007/S10577-013-9360-1  0.399
2013 Foulk MS, Waggener JM, Johnson JM, Yamamoto Y, Liew GM, Urnov FD, Young Y, Lee G, Smith HS, Gerbi SA. Isolation and characterization of the ecdysone receptor and its heterodimeric partner ultraspiracle through development in Sciara coprophila. Chromosoma. 122: 103-19. PMID 23321980 DOI: 10.1007/S00412-012-0395-4  0.397
2006 Foulk MS, Liang C, Wu N, Blitzblau HG, Smith H, Alam D, Batra M, Gerbi SA. Ecdysone induces transcription and amplification in Sciara coprophila DNA puff II/9A. Developmental Biology. 299: 151-63. PMID 16938289 DOI: 10.1016/J.Ydbio.2006.07.018  0.402
2005 Borovjagin AV, Gerbi SA. An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA. Nucleic Acids Research. 33: 4995-5005. PMID 16147982 DOI: 10.1093/Nar/Gki815  0.402
2005 Gerbi SA. Mapping origins of DNA replication in eukaryotes. Methods in Molecular Biology (Clifton, N.J.). 296: 167-80. PMID 15576931 DOI: 10.1385/1-59259-857-9:167  0.371
2004 Borovjagin AV, Gerbi SA. Xenopus U3 snoRNA docks on pre-rRNA through a novel base-pairing interaction. Rna (New York, N.Y.). 10: 942-53. PMID 15146078 DOI: 10.1261/Rna.5256704  0.385
2003 Gerbi SA, Borovjagin AV, Odreman FE, Lange TS. U4 snRNA nucleolar localization requires the NHPX/15.5-kD protein binding site but not Sm protein or U6 snRNA association. The Journal of Cell Biology. 162: 821-32. PMID 12939253 DOI: 10.1083/Jcb.200301071  0.372
2003 Gerbi SA, Borovjagin AV, Lange TS. The nucleolus: a site of ribonucleoprotein maturation. Current Opinion in Cell Biology. 15: 318-25. PMID 12787774 DOI: 10.1016/S0955-0674(03)00049-8  0.372
2002 Gerbi SA, Strezoska Z, Waggener JM. Initiation of DNA replication in multicellular eukaryotes. Journal of Structural Biology. 140: 17-30. PMID 12490150 DOI: 10.1016/S1047-8477(02)00538-5  0.428
2002 Urnov FD, Liang C, Blitzblau HG, Smith HS, Gerbi SA. A DNase I hypersensitive site flanks an origin of DNA replication and amplification in Sciara. Chromosoma. 111: 291-303. PMID 12474058 DOI: 10.1007/S00412-002-0194-4  0.452
2002 Lunyak VV, Ezrokhi M, Smith HS, Gerbi SA. Developmental changes in the Sciara II/9A initiation zone for DNA replication. Molecular and Cellular Biology. 22: 8426-37. PMID 12446763 DOI: 10.1128/Mcb.22.24.8426-8437.2002  0.43
2002 Gerbi SA, Lange TS. All small nuclear RNAs (snRNAs) of the [U4/U6.U5] Tri-snRNP localize to nucleoli; Identification of the nucleolar localization element of U6 snRNA. Molecular Biology of the Cell. 13: 3123-37. PMID 12221120 DOI: 10.1091/Mbc.01-12-0596  0.335
2002 Gerbi SA, Bielinsky AK. DNA replication and chromatin. Current Opinion in Genetics & Development. 12: 243-8. PMID 11893499 DOI: 10.1016/S0959-437X(02)00292-7  0.369
2001 Gerbi SA, Borovjagin AV, Ezrokhi M, Lange TS. Ribosome biogenesis: role of small nucleolar RNA in maturation of eukaryotic rRNA. Cold Spring Harbor Symposia On Quantitative Biology. 66: 575-90. PMID 12762059 DOI: 10.1101/Sqb.2001.66.575  0.379
2001 Bielinsky AK, Blitzblau H, Beall EL, Ezrokhi M, Smith HS, Botchan MR, Gerbi SA. Origin recognition complex binding to a metazoan replication origin. Current Biology : Cb. 11: 1427-31. PMID 11566101 DOI: 10.1016/S0960-9822(01)00444-4  0.417
2001 Mok EH, Smith HS, DiBartolomeis SM, Kerrebrock AW, Rothschild LJ, Lange TS, Gerbi SA. Maintenance of the DNA puff expanded state is independent of active replication and transcription. Chromosoma. 110: 186-96. PMID 11513293 DOI: 10.1007/S004120000119  0.404
2001 Borovjagin AV, Gerbi SA. Xenopus U3 snoRNA GAC-Box A' and Box A sequences play distinct functional roles in rRNA processing. Molecular and Cellular Biology. 21: 6210-21. PMID 11509664 DOI: 10.1128/Mcb.21.18.6210-6221.2001  0.419
2000 Lange TS, Gerbi SA. Transient nucleolar localization Of U6 small nuclear RNA in Xenopus Laevis oocytes. Molecular Biology of the Cell. 11: 2419-28. PMID 10888678 DOI: 10.1091/Mbc.11.7.2419  0.336
2000 Borovjagin AV, Gerbi SA. The spacing between functional Cis-elements of U3 snoRNA is critical for rRNA processing. Journal of Molecular Biology. 300: 57-74. PMID 10864498 DOI: 10.1006/Jmbi.2000.3798  0.434
1999 Lange TS, Ezrokhi M, Amaldi F, Gerbi SA. Box H and box ACA are nucleolar localization elements of U17 small nucleolar RNA. Molecular Biology of the Cell. 10: 3877-90. PMID 10564278 DOI: 10.1091/Mbc.10.11.3877  0.379
1999 Bielinsky AK, Gerbi SA. Chromosomal ARS1 has a single leading strand start site. Molecular Cell. 3: 477-86. PMID 10230400 DOI: 10.1016/S1097-2765(00)80475-X  0.403
1999 Borovjagin AV, Gerbi SA. U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA processing pathway is taken in Xenopus oocytes. Journal of Molecular Biology. 286: 1347-63. PMID 10064702 DOI: 10.1006/Jmbi.1999.2527  0.386
1998 Lange TS, Ezrokhi M, Borovjagin AV, Rivera-León R, North MT, Gerbi SA. Nucleolar localization elements of Xenopus laevis U3 small nucleolar RNA. Molecular Biology of the Cell. 9: 2973-85. PMID 9763456 DOI: 10.1091/Mbc.9.10.2973  0.369
1998 Lange TS, Borovjagin AV, Gerbi SA. Nucleolar localization elements in U8 snoRNA differ from sequences required for rRNA processing. Rna (New York, N.Y.). 4: 789-800. PMID 9671052 DOI: 10.1017/S1355838298980438  0.407
1998 Lange TS, Borovjagin A, Maxwell ES, Gerbi SA. Conserved boxes C and D are essential nucleolar localization elements of U14 and U8 snoRNAs. The Embo Journal. 17: 3176-87. PMID 9606199 DOI: 10.1093/Emboj/17.11.3176  0.33
1998 Bielinsky AK, Gerbi SA. Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science (New York, N.Y.). 279: 95-8. PMID 9417033 DOI: 10.1126/Science.279.5347.95  0.408
1997 Gerbi SA, Bielinsky AK. Replication initiation point mapping. Methods (San Diego, Calif.). 13: 271-80. PMID 9441853 DOI: 10.1006/Meth.1997.0526  0.433
1997 Rivera-León R, Gerbi SA. Delocalization of some small nucleolar RNPs after actinomycin D treatment to deplete early pre-rRNAs. Chromosoma. 105: 506-14. PMID 9211978 DOI: 10.1007/Bf02510487  0.333
1997 Gerbi SA, Borovjagin A. U3 snoRNA may recycle through different compartments of the nucleolus. Chromosoma. 105: 401-6. PMID 9211967 DOI: 10.1007/Bf02510476  0.377
1997 Gerbi SA. The nucleolus: Then and now Chromosoma. 105: 385-387. DOI: 10.1007/Bf02510473  0.32
1996 Gerbi SA, Urnov FD. 35 Differential DNA Replication in Insects Cold Spring Harbor Monograph Archive. 31: 947-969. DOI: 10.1101/087969459.31.947  0.376
1995 Gerbi SA. Small nucleolar RNA. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 845-58. PMID 8722000 DOI: 10.1139/O95-092  0.453
1994 Liang C, Gerbi SA. Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method. Molecular and Cellular Biology. 14: 1520-9. PMID 8289825 DOI: 10.1128/Mcb.14.2.1520  0.36
1993 Liang C, Spitzer JD, Smith HS, Gerbi SA. Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A. Genes & Development. 7: 1072-84. PMID 8504930 DOI: 10.1101/Gad.7.6.1072  0.383
1993 Wu N, Liang C, DiBartolomeis SM, Smith HS, Gerbi SA. Developmental progression of DNA puffs in Sciara coprophila: amplification and transcription. Developmental Biology. 160: 73-84. PMID 8224550 DOI: 10.1006/Dbio.1993.1287  0.43
1993 Gerbi SA, Liang C, Wu N, DiBartolomeis SM, Bienz-Tadmor B, Smith HS, Urnov FD. DNA amplification in DNA puff II/9A of Sciara coprophila. Cold Spring Harbor Symposia On Quantitative Biology. 58: 487-94. PMID 7956063 DOI: 10.1101/Sqb.1993.058.01.055  0.356
1992 Savino R, Hitti Y, Gerbi SA. Genes for Xenopus laevis U3 small nuclear RNA. Nucleic Acids Research. 20: 5435-42. PMID 1437561 DOI: 10.1093/Nar/20.20.5435  0.409
1992 Bienz-Tadmor B, Tolias P, Stebbins-Boaz B, Mariani BD, Gerbi SA, Kafatos FC. Chorion gene cis-regulatory DNA restricts tissue specificity of reporter gene expression in transformed Drosophila. Chromosoma. 101: 538-48. PMID 1325896 DOI: 10.1007/Bf00660313  0.323
1991 Stebbins-Boaz B, Gerbi SA. Structural analysis of the peptidyl transferase region in ribosomal RNA of the eukaryote Xenopus laevis. Journal of Molecular Biology. 217: 93-112. PMID 1988683 DOI: 10.1016/0022-2836(91)90614-C  0.403
1991 Bienz-Tadmor B, Smith HS, Gerbi SA. The promoter of DNA puff gene II/9-1 of Sciara coprophila is inducible by ecdysone in late prepupal salivary glands of Drosophila melanogaster. Cell Regulation. 2: 875-88. PMID 1809395 DOI: 10.1091/Mbc.2.11.875  0.374
1991 Andreazzoli M, Gerbi SA. Changes in 7SL RNA conformation during the signal recognition particle cycle. The Embo Journal. 10: 767-77. PMID 1706993 DOI: 10.1002/J.1460-2075.1991.Tb08008.X  0.352
1990 Savino R, Gerbi SA. In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing. The Embo Journal. 9: 2299-308. PMID 2357971 DOI: 10.1002/J.1460-2075.1990.Tb07401.X  0.375
1990 SAVINO R, GERBI S. disruption of U3 snRNA affects ribosomal RNA processing Cell Biology International Reports. 14: 128. DOI: 10.1016/0309-1651(90)90611-2  0.366
1990 ANDREAZZOLI M, GERBI S. Higher order structure and conformational changes of 7SL-RNA Cell Biology International Reports. 14: 112. DOI: 10.1016/0309-1651(90)90548-D  0.329
1989 DiBartolomeis SM, Gerbi SA. Molecular characterization of DNA puff II/9A genes in Sciara coprophila. Journal of Molecular Biology. 210: 531-40. PMID 2614832 DOI: 10.1016/0022-2836(89)90129-0  0.411
1989 Kerrebrock AW, Srivastava R, Gerbi SA. Isolation and characterization of ribosomal DNA variants from Sciara coprophila. Journal of Molecular Biology. 210: 1-13. PMID 2555520 DOI: 10.1016/0022-2836(89)90286-6  0.432
1988 Jeppesen C, Stebbins-Boaz B, Gerbi SA. Nucleotide sequence determination and secondary structure of Xenopus U3 snRNA. Nucleic Acids Research. 16: 2127-48. PMID 3357768 DOI: 10.1093/Nar/16.5.2127  0.49
1987 Gerbi SA, Jeppesen C, Stebbins-Boaz B, Ares M. Evolution of eukaryotic rRNA: constraints imposed by RNA interactions. Cold Spring Harbor Symposia On Quantitative Biology. 52: 709-19. PMID 3454284 DOI: 10.1101/Sqb.1987.052.01.080  0.364
1986 Rothschild LJ, Ragan MA, Coleman AW, Heywood P, Gerbi SA. Are rRNA sequence comparisons the Rosetta stone of phylogenetics? Cell. 47: 640. PMID 3779840 DOI: 10.1016/0092-8674(86)90505-2  0.394
1986 Gerbi SA. The evolution of eukaryotic ribosomal DNA. Bio Systems. 19: 247-58. PMID 3026507 DOI: 10.1016/0303-2647(86)90001-8  0.479
1985 Ware VC, Renkawitz R, Gerbi SA. rRNA processing: removal of only nineteen bases at the gap between 28S alpha and 28S beta rRNAs in Sciara coprophila. Nucleic Acids Research. 13: 3581-97. PMID 2989775 DOI: 10.1093/Nar/13.10.3581  0.371
1984 Tague BW, Gerbi SA. Processing of the large rRNA precursor: two proposed categories of RNA-RNA interactions in eukaryotes. Journal of Molecular Evolution. 20: 362-7. PMID 6210374 DOI: 10.1007/Bf02104742  0.414
1984 Clark CG, Tague BW, Ware VC, Gerbi SA. Xenopus laevis 28S ribosomal RNA: a secondary structure model and its evolutionary and functional implications. Nucleic Acids Research. 12: 6197-220. PMID 6147812 DOI: 10.1093/Nar/12.15.6197  0.393
1983 Ware VC, Tague BW, Clark CG, Gourse RL, Brand RC, Gerbi SA. Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis. Nucleic Acids Research. 11: 7795-817. PMID 6359063 DOI: 10.1093/Nar/11.22.7795  0.453
1982 Bäumlein H, Wobus U, Gerbi S, Kafatos FC. Characterization of a 249-bp tandemly repetitive, satellite-like repeat in the translated portion of Balbiani ring c of Chironomus thummi Embo Journal. 1: 641-647. PMID 7188354 DOI: 10.1002/J.1460-2075.1982.Tb01221.X  0.461
1982 Clark CG, Gerbi SA. Ribosomal RNA evolution by fragmentation of the 23S progenitor: maturation pathway parallels evolutionary emergence. Journal of Molecular Evolution. 18: 329-36. PMID 7120427 DOI: 10.1007/Bf01733899  0.444
1982 Bäumlein H, Wobus U, Gerbi SA, Kafatos FC. The basic repeat unit of a Chironomus Balbiani ring gene. Nucleic Acids Research. 10: 3893-904. PMID 7111025 DOI: 10.1093/Nar/10.13.3893  0.309
1982 Taparowsky EJ, Gerbi SA. Structure of 1.71 lb gm/cm(3) bovine satellite DNA: evolutionary relationship to satellite I. Nucleic Acids Research. 10: 5503-15. PMID 6292843 DOI: 10.1093/Nar/10.18.5503  0.662
1982 Matsumoto LH, Gerbi SA. Early initiation of bovine satellite I DNA replication. Experimental Cell Research. 140: 47-54. PMID 6286333 DOI: 10.1016/0014-4827(82)90154-9  0.364
1982 Taparowsky EJ, Gerbi SA. Sequence analysis of bovine satellite I DNA (1.715 gm/cm3). Nucleic Acids Research. 10: 1271-81. PMID 6280137 DOI: 10.1093/Nar/10.4.1271  0.687
1982 Taparowsky EJ, Gerbi SA. Structure of 1.711b gm/cm bovine satellite DNA: Evolutionary relationship to satellite i Nucleic Acids Research. 10: 5503-5515. DOI: 10.1093/nar/10.18.5503  0.606
1981 Renkawitz-Pohl R, Matsumoto L, Gerbi SA. Two distinct intervening sequences in different ribosomal DNA repeat units of Sciara coprophila. Nucleic Acids Research. 9: 3747-64. PMID 7279671 DOI: 10.1093/Nar/9.15.3747  0.482
1981 Abbott AG, Gerbi SA. Spermatogenesis in Sciara coprophila. II. Precocious chromosome orientation in meiosis II. Chromosoma. 83: 19-27. PMID 7196316 DOI: 10.1007/Bf00286013  0.313
1981 Gourse RL, Thurlow DL, Gerbi SA, Zimmermann RA. Specific binding of a prokaryotic ribosomal protein to a eukaryotic ribosomal RNA: implications for evolution and autoregulation. Proceedings of the National Academy of Sciences of the United States of America. 78: 2722-6. PMID 6265904 DOI: 10.1073/Pnas.78.5.2722  0.371
1981 Gerbi SA. EVOLUTION OF RIBOSOMAL RNA GENES Biochemical Society Transactions. 9: 94P-94P. DOI: 10.1042/Bst009094P  0.362
1980 Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. IV. Extraordinary evolutionary conservation in sequences that flank introns in rDNA. Nucleic Acids Research. 8: 3623-37. PMID 6253905 DOI: 10.1093/Nar/8.16.3623  0.53
1980 Gourse RL, Gerbi SA. Fine structure of ribosomal RNA. III. Location of evolutionarily conserved regions within ribosomal DNA. Journal of Molecular Biology. 140: 321-39. PMID 6253644 DOI: 10.1016/0022-2836(80)90109-6  0.542
1979 Brand RC, Gerbi SA. Fine structure of ribosomal RNA. II. Distribution of methylated sequences within Xenopus laevis rRNA. Nucleic Acids Research. 7: 1497-511. PMID 388355 DOI: 10.1093/Nar/7.6.1497  0.39
1979 Renkawitz R, Gerbi SA, Glätzer KH. Ribosomal DNA of fly Sciara coprophila has a very small and homogeneous repeat unit. Molecular & General Genetics : Mgg. 173: 1-13. PMID 288964 DOI: 10.1007/Bf00267685  0.44
1977 Gerbi SA. Analysis of RNA-DNA competition hybridization using the Scatchard plot. Experimental Cell Research. 106: 454-7. PMID 862671 DOI: 10.1016/0014-4827(77)90202-6  0.42
1977 Crouse HV, Gerbi SA, Liang CM, Magnus L, Mercer IM. Localization of ribosomal DNA within the proximal X heterochromatin of Sciara coprophila (Diptera, Sciaridae). Chromosoma. 64: 305-18. PMID 563785 DOI: 10.1007/Bf00294938  0.306
1976 Gerbi SA. Fine structure of ribosomal RNA. I. Conservation of homologous regions within ribosomal RNA of eukaryotes. Journal of Molecular Biology. 106: 791-816. PMID 978737 DOI: 10.1016/0022-2836(76)90265-5  0.437
1976 Gerbi SA. DNA Elution during Thermal Melting of RNA-DNA Hybrids on Nitrocellulose Filters Journal of Molecular Biology. 106: 811-816. DOI: 10.1016/0022-2836(76)90266-7  0.396
1975 Mowbray SL, Gerbi SA, Landy A. Interdigitated repeated sequences in bovine satellite DNA. Nature. 253: 367-70. PMID 1078604 DOI: 10.1038/253367A0  0.473
1971 Gerbi SA. Localization and characterization of the ribosomal RNA cistrons in Sciara coprophila. Journal of Molecular Biology. 58: 499-511. PMID 5091980 DOI: 10.1016/0022-2836(71)90367-6  0.397
1970 Pardu ML, Gerbi SA, Eckhardt RA, Gall JG. Cytological localization of DNA complementary to ribosomal RNA in polytene chromosomes of Diptera. Chromosoma. 29: 268-90. PMID 4908207 DOI: 10.1007/Bf00325943  0.626
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