| Year |
Citation |
Score |
| 2023 |
Fecho K, Bizon C, Issabekova T, Moxon S, Thessen AE, Abdollahi S, Baranzini SE, Belhu B, Byrd WE, Chung L, Crouse A, Duby MP, Ferguson S, Foksinska A, Forero L, ... ... Su AI, et al. An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges. Journal of Clinical and Translational Science. 7: e214. PMID 37900350 DOI: 10.1017/cts.2023.619 |
0.503 |
|
| 2023 |
Gonzalez-Cavazos AC, Tanska A, Mayers M, Carvalho-Silva D, Sridharan B, Rewers PA, Sankarlal U, Jagannathan L, Su AI. DrugMechDB: A Curated Database of Drug Mechanisms. Scientific Data. 10: 632. PMID 37717042 DOI: 10.1038/s41597-023-02534-z |
0.768 |
|
| 2023 |
Callaghan J, Xu CH, Xin J, Cano MA, Riutta A, Zhou E, Juneja R, Yao Y, Narayan M, Hanspers K, Agrawal A, Pico AR, Wu C, Su AI. BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Bioinformatics (Oxford, England). PMID 37707514 DOI: 10.1093/bioinformatics/btad570 |
0.648 |
|
| 2023 |
Gonzalez-Cavazos AC, Tanska A, Mayers MD, Carvalho-Silva D, Sridharan B, Rewers PA, Sankarlal U, Jagannathan L, Su AI. DrugMechDB: A Curated Database of Drug Mechanisms. Biorxiv : the Preprint Server For Biology. PMID 37205439 DOI: 10.1101/2023.05.01.538993 |
0.768 |
|
| 2023 |
Callaghan J, Xu CH, Xin J, Cano MA, Riutta A, Zhou E, Juneja R, Yao Y, Narayan M, Hanspers K, Agrawal A, Pico AR, Wu C, Su AI. BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Arxiv. PMID 37131885 |
0.649 |
|
| 2023 |
Cano MA, Tsueng G, Zhou X, Xin J, Hughes LD, Mullen JL, Su AI, Wu C. Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. Bmc Bioinformatics. 24: 159. PMID 37081398 DOI: 10.1186/s12859-023-05258-4 |
0.635 |
|
| 2023 |
Gangavarapu K, Latif AA, Mullen JL, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves CM, Zaiets K, Cano M, Zhou X, Qian Z, Sattler R, Matteson NL, ... ... Su AI, et al. Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations. Nature Methods. PMID 36823332 DOI: 10.1038/s41592-023-01769-3 |
0.493 |
|
| 2023 |
Tsueng G, Mullen JL, Alkuzweny M, Cano M, Rush B, Haag E, Lin J, Welzel DJ, Zhou X, Qian Z, Latif AA, Hufbauer E, Zeller M, Andersen KG, Wu C, ... Su AI, et al. Outbreak.info Research Library: a standardized, searchable platform to discover and explore COVID-19 resources. Nature Methods. PMID 36823331 DOI: 10.1038/s41592-023-01770-w |
0.457 |
|
| 2023 |
Hughes LD, Tsueng G, DiGiovanna J, Horvath TD, Rasmussen LV, Savidge TC, Stoeger T, Turkarslan S, Wu Q, Wu C, Su AI, Pache L. Addressing barriers in FAIR data practices for biomedical data. Scientific Data. 10: 98. PMID 36823198 DOI: 10.1038/s41597-023-01969-8 |
0.449 |
|
| 2023 |
Tsueng G, Cano MAA, Bento J, Czech C, Kang M, Pache L, Rasmussen LV, Savidge TC, Starren J, Wu Q, Xin J, Yeaman MR, Zhou X, Su AI, Wu C, et al. Developing a standardized but extendable framework to increase the findability of infectious disease datasets. Scientific Data. 10: 99. PMID 36823157 DOI: 10.1038/s41597-023-01968-9 |
0.663 |
|
| 2022 |
Hughes L, Gangavarapu K, Latif AA, Mullen J, Alkuzweny M, Hufbauer E, Tsueng G, Haag E, Zeller M, Aceves C, Zaiets K, Cano M, Zhou J, Qian Z, Sattler R, ... ... Su A, et al. Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations. Research Square. PMID 35794893 DOI: 10.21203/rs.3.rs-1723829/v1 |
0.491 |
|
| 2022 |
Cano M, Tsueng G, Zhou X, Hughes LD, Mullen JL, Xin J, Su AI, Wu C. Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. Biorxiv : the Preprint Server For Biology. PMID 35677074 DOI: 10.1101/2021.09.02.458726 |
0.635 |
|
| 2022 |
Mayers M, Tu R, Steinecke D, Li TS, Queralt-Rosinach N, Su AI. Design and application of a knowledge network for automatic prioritization of drug mechanisms. Bioinformatics (Oxford, England). 38: 2880-2891. PMID 35561182 DOI: 10.1093/bioinformatics/btac205 |
0.773 |
|
| 2022 |
Mayers M, Tu R, Steinecke D, Li TS, Queralt-Rosinach N, Su AI. Design and application of a knowledge network for automatic prioritization of drug mechanisms. Bioinformatics (Oxford, England). PMID 35385070 DOI: 10.1093/bioinformatics/btac205 |
0.773 |
|
| 2022 |
Tsueng G, Mullen J, Alkuzweny M, Cano M, Rush B, Haag E, Curators O, Alaa Abdel L, Zhou X, Qian Z, Andersen KG, Wu C, Su AI, Gangavarapu K, Hughes LD. Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources and data. Biorxiv : the Preprint Server For Biology. PMID 35132411 DOI: 10.1101/2022.01.20.477133 |
0.501 |
|
| 2022 |
Thuy-Boun PS, Wang AY, Crissien-Martinez A, Xu JH, Chatterjee S, Stupp GS, Su AI, Coyle WJ, Wolan DW. Quantitative metaproteomics and activity-based protein profiling of patient fecal microbiome identifies host and microbial serine-type endopeptidase activity associated with ulcerative colitis. Molecular & Cellular Proteomics : McP. 100197. PMID 35033677 DOI: 10.1016/j.mcpro.2022.100197 |
0.751 |
|
| 2022 |
Lelong S, Zhou X, Afrasiabi C, Qian Z, Cano MA, Tsueng G, Xin J, Mullen J, Yao Y, Avila R, Taylor G, Su AI, Wu C. BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. Bioinformatics (Oxford, England). PMID 35020801 DOI: 10.1093/bioinformatics/btac017 |
0.666 |
|
| 2020 |
Lee KI, Gamini R, Olmer M, Ikuta Y, Hasei J, Baek J, Alvarez-Garcia O, Grogan SP, D'Lima DD, Asahara H, Su AI, Lotz MK. Mohawk is a transcription factor that promotes meniscus cell phenotype and tissue repair and reduces osteoarthritis severity. Science Translational Medicine. 12. PMID 33115953 DOI: 10.1126/scitranslmed.aan7967 |
0.767 |
|
| 2020 |
Riva L, Yuan S, Yin X, Martin-Sancho L, Matsunaga N, Pache L, Burgstaller-Muehlbacher S, De Jesus PD, Teriete P, Hull MV, Chang MW, Chan JF, Cao J, Poon VK, Herbert KM, ... ... Su AI, et al. Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing. Nature. PMID 32707573 DOI: 10.1038/S41586-020-2577-1 |
0.784 |
|
| 2020 |
Riva L, Yuan S, Yin X, Martin-Sancho L, Matsunaga N, Burgstaller-Muehlbacher S, Pache L, De Jesus PP, Hull MV, Chang M, Chan JF, Cao J, Poon VK, Herbert K, Nguyen TT, ... ... Su A, et al. A Large-scale Drug Repositioning Survey for SARS-CoV-2 Antivirals. Biorxiv : the Preprint Server For Biology. PMID 32511357 DOI: 10.1101/2020.04.16.044016 |
0.784 |
|
| 2020 |
Queralt-Rosinach N, Stupp GS, Li TS, Mayers M, Hoatlin ME, Might M, Good BM, Su AI. Structured reviews for data and knowledge-driven research. Database : the Journal of Biological Databases and Curation. 2020. PMID 32283553 DOI: 10.1093/Database/Baaa015 |
0.79 |
|
| 2020 |
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, ... ... Su AI, et al. Wikidata as a knowledge graph for the life sciences. Elife. 9. PMID 32180547 DOI: 10.7554/Elife.52614 |
0.778 |
|
| 2020 |
Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, ... ... Su AI, et al. Author response: Wikidata as a knowledge graph for the life sciences Elife. DOI: 10.7554/Elife.52614.Sa2 |
0.74 |
|
| 2019 |
Summers KM, Bush SJ, Wu C, Su AI, Muriuki C, Clark EL, Finlayson HA, Eory L, Waddell LA, Talbot R, Archibald AL, Hume DA. Functional Annotation of the Transcriptome of the Pig, , Based Upon Network Analysis of an RNAseq Transcriptional Atlas. Frontiers in Genetics. 10: 1355. PMID 32117413 DOI: 10.3389/Fgene.2019.01355 |
0.591 |
|
| 2019 |
Mayers M, Li TS, Queralt-Rosinach N, Su AI. Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network. Bmc Bioinformatics. 20: 653. PMID 31829175 DOI: 10.1186/S12859-019-3297-0 |
0.784 |
|
| 2019 |
Blasco A, Endres MG, Sergeev RA, Jonchhe A, Macaluso NJM, Narayan R, Natoli T, Paik JH, Briney B, Wu C, Su AI, Subramanian A, Lakhani KR. Advancing computational biology and bioinformatics research through open innovation competitions. Plos One. 14: e0222165. PMID 31560691 DOI: 10.1371/Journal.Pone.0222165 |
0.542 |
|
| 2019 |
Tsueng G, Nanis M, Fouquier JT, Mayers M, Good BM, Su AI. Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. Bioinformatics (Oxford, England). PMID 31504205 DOI: 10.1093/Bioinformatics/Btz678 |
0.788 |
|
| 2019 |
Gioia L, Holt M, Costanzo A, Sharma S, Abe B, Kain L, Nakayama M, Wan X, Su A, Mathews C, Chen YG, Unanue E, Teyton L. Position β57 of I-A controls early anti-insulin responses in NOD mice, linking an MHC susceptibility allele to type 1 diabetes onset. Science Immunology. 4. PMID 31471352 DOI: 10.1126/Sciimmunol.Aaw6329 |
0.641 |
|
| 2019 |
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database : the Journal of Biological Databases and Curation. 2019. PMID 31211397 DOI: 10.1093/database/baz091 |
0.767 |
|
| 2019 |
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database : the Journal of Biological Databases and Curation. 2019. PMID 30985891 DOI: 10.1093/Database/Baz041 |
0.77 |
|
| 2019 |
Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, ... ... Su AI, et al. exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids. Cell. 177: 463-477.e15. PMID 30951672 DOI: 10.1016/J.Cell.2019.02.018 |
0.784 |
|
| 2019 |
Sharma S, Gioia L, Abe B, Holt M, Costanzo A, Kain L, Su A, Teyton L. Corrigendum to "Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges" [Mol. Immunol. 103 (2018) 191-199]. Molecular Immunology. PMID 30732931 DOI: 10.1016/J.Molimm.2019.01.011 |
0.645 |
|
| 2018 |
Sharma S, Gioia L, Abe B, Holt M, Costanzo A, Kain L, Su A, Teyton L. Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges. Molecular Immunology. 103: 191-199. PMID 30300798 DOI: 10.1016/J.Molimm.2018.09.020 |
0.67 |
|
| 2018 |
Janes J, Young ME, Chen E, Rogers NH, Burgstaller-Muehlbacher S, Hughes LD, Love MS, Hull MV, Kuhen KL, Woods AK, Joseph SB, Petrassi HM, McNamara CW, Tremblay MS, Su AI, et al. The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis. Proceedings of the National Academy of Sciences of the United States of America. 115: 10750-10755. PMID 30282735 DOI: 10.1073/Pnas.1810137115 |
0.779 |
|
| 2018 |
Fisch KM, Gamini R, Alvarez-Garcia O, Akagi R, Saito M, Muramatsu Y, Sasho T, Koziol JA, Su AI, Lotz MK. Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis. Osteoarthritis and Cartilage. PMID 30081074 DOI: 10.1016/J.Joca.2018.07.012 |
0.796 |
|
| 2018 |
Wang AY, Thuy-Boun PS, Stupp GS, Su AI, Wolan DW. Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass. Journal of Proteome Research. 17: 2978-2986. PMID 30019906 DOI: 10.1021/Acs.Jproteome.8B00166 |
0.728 |
|
| 2018 |
Hutt DM, Loguercio S, Roth DM, Su AI, Balch WE. Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation. The Journal of Biological Chemistry. 293: 13477-13495. PMID 30006345 DOI: 10.1074/Jbc.Ra118.003192 |
0.716 |
|
| 2018 |
Gioia L, Siddique A, Head SR, Salomon DR, Su AI. A genome-wide survey of mutations in the Jurkat cell line. Bmc Genomics. 19: 334. PMID 29739316 DOI: 10.1186/S12864-018-4718-6 |
0.648 |
|
| 2018 |
Ma S, Cahalan S, LaMonte G, Grubaugh ND, Zeng W, Murthy SE, Paytas E, Gamini R, Lukacs V, Whitwam T, Loud M, Lohia R, Berry L, Khan SM, Janse CJ, ... ... Su AI, et al. Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection. Cell. 173: 443-455.e12. PMID 29576450 DOI: 10.1016/J.Cell.2018.02.047 |
0.757 |
|
| 2018 |
Bruggemann J, Lander GC, Su AI. Exploring applications of crowdsourcing to cryo-EM. Journal of Structural Biology. 203: 37-45. PMID 29486249 DOI: 10.1016/J.Jsb.2018.02.006 |
0.664 |
|
| 2018 |
Matsuzaki T, Alvarez-Garcia O, Mokuda S, Nagira K, Olmer M, Gamini R, Miyata K, Akasaki Y, Su AI, Asahara H, Lotz MK. FoxO transcription factors modulate autophagy and proteoglycan 4 in cartilage homeostasis and osteoarthritis. Science Translational Medicine. 10. PMID 29444976 DOI: 10.1126/Scitranslmed.Aan0746 |
0.757 |
|
| 2018 |
Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C. Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. Bmc Bioinformatics. 19: 30. PMID 29390967 DOI: 10.1186/S12859-018-2041-5 |
0.676 |
|
| 2018 |
Moon C, Stupp GS, Su AI, Wolan DW. Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups. Proteomics. 18. PMID 29319931 DOI: 10.1002/Pmic.201700391 |
0.753 |
|
| 2018 |
Holt M, Costanzo A, Gioia L, Abe B, Su AI, Teyton L. Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells. Methods in Molecular Biology (Clifton, N.J.). 1712: 217-238. PMID 29224077 DOI: 10.1007/978-1-4939-7514-3_14 |
0.647 |
|
| 2018 |
Lelong S, Afrasiabi C, Xin J, Cano M, Tsueng G, Su AI, Wu C. BioThings Studio: an API gateway for biomedical knowledge F1000research. 7. DOI: 10.7490/F1000Research.1115797.1 |
0.65 |
|
| 2017 |
Shafee T, Mietchen D, Su AI. Academics can help shape Wikipedia. Science (New York, N.Y.). 357: 557-558. PMID 28798122 DOI: 10.1126/SCIENCE.AAO0462; |
0.333 |
|
| 2017 |
Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database : the Journal of Biological Databases and Curation. 2017. PMID 28365742 DOI: 10.1093/database/bax025 |
0.796 |
|
| 2017 |
Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, ... ... Su AI, et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics. 49: 170-174. PMID 28138153 DOI: 10.1038/Ng.3774 |
0.705 |
|
| 2017 |
Mayers MD, Moon C, Stupp GS, Su AI, Wolan DW. Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease. Journal of Proteome Research. 16: 1014-1026. PMID 28052195 DOI: 10.1021/Acs.Jproteome.6B00938 |
0.78 |
|
| 2017 |
Afrasiabi C, Lelong S, Xin J, Tsueng G, Su AI, Wu C. BioThings SDK: a toolkit for building high-performance data APIs in biology F1000research. 6. DOI: 10.7490/F1000Research.1114587.1 |
0.649 |
|
| 2017 |
Xin J, Afrasiabi C, Lelong S, Su AI, Wu C. BioThings Explorer: utilizing JSON-LD for linking biological APIs to facilitate knowledge discovery F1000research. 6. DOI: 10.7490/F1000Research.1114451.1 |
0.678 |
|
| 2017 |
Mitraka E, Waagmeester A, Queralt-Rosinach N, Burgstaller-Muehlbacher S, Stupp G, Schriml L, McMichael JF, Ainscough B, Griffith M, Griffith OL, Su AI, Good BM. 10 steps to integrate CIViCdb with other public data in Wikidata F1000research. 6. DOI: 10.7490/F1000Research.1113836.1 |
0.763 |
|
| 2017 |
Stupp GS, Queralt-Rosinach N, Putman T, Burgstaller-Muehlbacher S, Waagmeester A, Su AI, Good BM. Best practices for data provenance in Wikidata F1000research. 6. DOI: 10.7490/F1000Research.1113800.1 |
0.761 |
|
| 2017 |
Gamini R, Alvarez-Garcia O, Su A, Lotz M. Articular Cartilage Specific Gene Expression Pattern: Identification of Novel Transcription Factors That are Enriched In Cartilage Osteoarthritis and Cartilage. 25: S214. DOI: 10.1016/J.Joca.2017.02.370 |
0.781 |
|
| 2016 |
Tsueng G, Nanis SM, Fouquier J, Good BM, Su AI. Citizen Science for Mining the Biomedical Literature. Citizen Science : Theory and Practice. 1. PMID 30416754 DOI: 10.5334/cstp.56 |
0.627 |
|
| 2016 |
Akagi R, Akatsu Y, Fisch KM, Alvarez-Garcia O, Teramura T, Muramatsu Y, Saito M, Sasho T, Su AI, Lotz MK. Dysregulated circadian rhythm pathway in human osteoarthritis: NR1D1 and BMAL1 suppression alters TGF-β signaling in chondrocytes. Osteoarthritis and Cartilage. PMID 27884645 DOI: 10.1016/J.Joca.2016.11.007 |
0.585 |
|
| 2016 |
Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR, Su AI, Wolan DW. A comprehensive and scalable database search system for metaproteomics. Bmc Genomics. 17: 642. PMID 27528457 DOI: 10.1186/S12864-016-2855-3 |
0.752 |
|
| 2016 |
Lam MP, Venkatraman V, Xing Y, Lau E, Cao Q, Ng DC, Su AI, Ge J, Van Eyk JE, Ping P. Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems. Journal of Proteome Research. 15: 4126-4134. PMID 27356587 DOI: 10.1021/Acs.Jproteome.6B00095 |
0.314 |
|
| 2016 |
Kleiman E, Jia H, Loguercio S, Su AI, Feeney AJ. YY1 plays an essential role at all stages of B-cell differentiation. Proceedings of the National Academy of Sciences of the United States of America. 113: E3911-20. PMID 27335461 DOI: 10.1073/Pnas.1606297113 |
0.712 |
|
| 2016 |
Bravo À, Li TS, Su AI, Good BM, Furlong LI. Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database : the Journal of Biological Databases and Curation. 2016. PMID 27307137 DOI: 10.1093/Database/Baw094 |
0.701 |
|
| 2016 |
Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, et al. High-performance web services for querying gene and variant annotation. Genome Biology. 17: 91. PMID 27154141 DOI: 10.1186/S13059-016-0953-9 |
0.791 |
|
| 2016 |
Gangavarapu K, Babji V, Meißner T, Su AI, Good BM. Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinformatics (Oxford, England). 32: 2072-2074. PMID 27153723 DOI: 10.1093/Bioinformatics/Btw117 |
0.723 |
|
| 2016 |
Tsueng G, Good BM, Ping P, Golemis E, Hanukoglu I, van Wijnen AJ, Su AI. Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome. Gene. 592: 235-8. PMID 27150585 DOI: 10.1016/J.Gene.2016.04.053 |
0.671 |
|
| 2016 |
Alvarez-Garcia O, Olmer M, Akagi R, Akasaki Y, Fisch KM, Shen T, Su AI, Lotz MK. Suppression of REDD1 in osteoarthritis cartilage, a novel mechanism for dysregulated mTOR signaling and defective autophagy. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. PMID 27118398 DOI: 10.1016/J.Joca.2016.04.015 |
0.568 |
|
| 2016 |
Li TS, Bravo À, Furlong LI, Good BM, Su AI. A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database : the Journal of Biological Databases and Curation. 2016. PMID 27087308 DOI: 10.1093/Database/Baw051 |
0.67 |
|
| 2016 |
Cheung KH, Keerthikumar S, Roncaglia P, Subramanian SL, Roth ME, Samuel M, Anand S, Gangoda L, Gould S, Alexander R, Galas D, Gerstein MB, Hill AF, Kitchen RR, Lötvall J, ... ... Su AI, et al. Extending gene ontology in the context of extracellular RNA and vesicle communication. Journal of Biomedical Semantics. 7: 19. PMID 27076901 DOI: 10.1186/S13326-016-0061-5 |
0.357 |
|
| 2016 |
Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM. Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database : the Journal of Biological Databases and Curation. 2016. PMID 27022157 DOI: 10.1093/Database/Baw028 |
0.813 |
|
| 2016 |
Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI. Wikidata as a semantic framework for the Gene Wiki initiative. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989148 DOI: 10.1093/Database/Baw015 |
0.812 |
|
| 2016 |
Hettne KM, Thompson M, van Haagen HH, van der Horst E, Kaliyaperumal R, Mina E, Tatum Z, Laros JF, van Mulligen EM, Schuemie M, Aten E, Li TS, Bruskiewich R, Good BM, Su AI, et al. The Implicitome: A Resource for Rationalizing Gene-Disease Associations. Plos One. 11: e0149621. PMID 26919047 DOI: 10.1371/Journal.Pone.0149621 |
0.719 |
|
| 2016 |
Alvarez-Garcia O, Fisch KM, Wineinger NE, Akagi R, Saito M, Sasho T, Su AI, Lotz MK. Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage. Arthritis & Rheumatology (Hoboken, N.J.). 68: 1876-86. PMID 26881698 DOI: 10.1002/Art.39643 |
0.582 |
|
| 2016 |
Wu C, Jin X, Tsueng G, Afrasiabi C, Su AI. BioGPS: building your own mash-up of gene annotations and expression profiles. Nucleic Acids Research. 44: D313-6. PMID 26578587 DOI: 10.1093/Nar/Gkv1104 |
0.558 |
|
| 2016 |
Khare R, Good BM, Leaman R, Su AI, Lu Z. Crowdsourcing in biomedicine: challenges and opportunities. Briefings in Bioinformatics. 17: 23-32. PMID 25888696 DOI: 10.1093/Bib/Bbv021 |
0.666 |
|
| 2016 |
Xin J, Afrasiabi C, Lelong S, Tsueng G, Mayers MD, Mooney SD, Su AI, Wu C. Biothings APIs: linked high-performance APIs for biological entities F1000research. 5. DOI: 10.7490/F1000Research.1113452.1 |
0.638 |
|
| 2016 |
Xin J, Wu C, Afrasiabi C, Lelong S, Tsueng G, Su AI. MyGene.info and MyVariant.info: providing gene and genetic variant annotations as a service F1000research. 5. DOI: 10.7490/F1000Research.1112806.1 |
0.659 |
|
| 2015 |
Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A. Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies. Journal of Extracellular Vesicles. 4: 27497. PMID 26320941 DOI: 10.3402/Jev.V4.27497 |
0.346 |
|
| 2015 |
Lam MP, Venkatraman V, Cao Q, Wang D, Dincer TU, Lau E, Su AI, Xing Y, Ge J, Ping P, Van Eyk JE. Prioritizing Proteomics Assay Development for Clinical Translation. Journal of the American College of Cardiology. 66: 202-4. PMID 26160638 DOI: 10.1016/J.Jacc.2015.04.072 |
0.31 |
|
| 2015 |
Meißner T, Fisch KM, Gioia L, Su AI. OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing. Bmc Medical Genomics. 8: 24. PMID 25989980 DOI: 10.1186/S12920-015-0095-Z |
0.782 |
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| 2015 |
Wieskopf JS, Mathur J, Limapichat W, Post MR, Al-Qazzaz M, Sorge RE, Martin LJ, Zaykin DV, Smith SB, Freitas K, Austin JS, Dai F, Zhang J, Marcovitz J, Tuttle AH, ... ... Su AI, et al. The nicotinic α6 subunit gene determines variability in chronic pain sensitivity via cross-inhibition of P2X2/3 receptors. Science Translational Medicine. 7: 287ra72. PMID 25972004 DOI: 10.1126/Scitranslmed.3009986 |
0.75 |
|
| 2015 |
Scruggs SB, Watson K, Su AI, Hermjakob H, Yates JR, Lindsey ML, Ping P. Harnessing the heart of big data. Circulation Research. 116: 1115-9. PMID 25814682 DOI: 10.1161/Circresaha.115.306013 |
0.349 |
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| 2015 |
Fisch KM, Meißner T, Gioia L, Ducom JC, Carland TM, Loguercio S, Su AI. Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinformatics (Oxford, England). 31: 1724-8. PMID 25637560 DOI: 10.1093/Bioinformatics/Btv061 |
0.793 |
|
| 2015 |
Good BM, Nanis M, Wu C, Su AI. Microtask crowdsourcing for disease mention annotation in PubMed abstracts. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 282-93. PMID 25592589 |
0.707 |
|
| 2015 |
Leaman R, Good BM, Su AI, Lu Z. Crowdsourcing and mining crowd data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 267-9. PMID 25592587 |
0.597 |
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| 2015 |
Meißner T, Fisch KM, Gioia L, Su AI. From Fastq to Drug Recommendation – Automated Cancer Report Generation using OncoRep & Omics Pipe F1000research. 4. DOI: 10.7490/F1000Research.1110018.1 |
0.769 |
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| 2015 |
Alvarez-Garcia O, Fisch K, Akagi R, Su A, Lotz M. Differential DNA methylation and reduced expression of critical transcription factors in human oa cartilage Osteoarthritis and Cartilage. 23: A72-A73. DOI: 10.1016/J.Joca.2015.02.148 |
0.569 |
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| 2015 |
Alvarez-Garcia O, Akagi R, Akasaki Y, Fisch K, Su A, Lotz M. Suppression of REDD1 in OA cartilage, a novel mechanism for dysregulated mTOR activation Osteoarthritis and Cartilage. 23: A31. DOI: 10.1016/J.Joca.2015.02.074 |
0.559 |
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| 2014 |
Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI. The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction. Jmir Serious Games. 2: e7. PMID 25654473 DOI: 10.2196/games.3350 |
0.79 |
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| 2014 |
Wei N, Shi Y, Truong LN, Fisch KM, Xu T, Gardiner E, Fu G, Hsu YO, Kishi S, Su AI, Wu X, Yang XL. Oxidative stress diverts tRNA synthetase to nucleus for protection against DNA damage. Molecular Cell. 56: 323-332. PMID 25284223 DOI: 10.1016/J.Molcel.2014.09.006 |
0.556 |
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| 2014 |
Good BM, Ainscough BJ, McMichael JF, Su AI, Griffith OL. Organizing knowledge to enable personalization of medicine in cancer. Genome Biology. 15: 438. PMID 25222080 DOI: 10.1186/S13059-014-0438-7 |
0.645 |
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| 2014 |
Peterson SN, Meissner T, Su AI, Snesrud E, Ong AC, Schork NJ, Bretz WA. Functional expression of dental plaque microbiota. Frontiers in Cellular and Infection Microbiology. 4: 108. PMID 25177549 DOI: 10.3389/Fcimb.2014.00108 |
0.593 |
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| 2014 |
Fisch K, Saito M, Akagi R, Duffy S, Alvarez-Garcia O, Grogan S, D’Lima D, Su A, Lotz M. Integrative Omics profiling of osteoarthritis Osteoarthritis and Cartilage. 22: S231-S232. DOI: 10.1016/J.Joca.2014.02.446 |
0.57 |
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| 2013 |
Masum H, Rao A, Good BM, Todd MH, Edwards AM, Chan L, Bunin BA, Su AI, Thomas Z, Bourne PE. Ten simple rules for cultivating open science and collaborative R&D. Plos Computational Biology. 9: e1003244. PMID 24086123 DOI: 10.1371/Journal.Pcbi.1003244 |
0.657 |
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| 2013 |
Su AI, Good BM, van Wijnen AJ. Gene Wiki Reviews: marrying crowdsourcing with traditional peer review. Gene. 531: 125. PMID 24012870 DOI: 10.1016/J.Gene.2013.08.093 |
0.633 |
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| 2013 |
Loguercio S, Good BM, Su AI. Dizeez: an online game for human gene-disease annotation. Plos One. 8: e71171. PMID 23951102 DOI: 10.1371/Journal.Pone.0071171 |
0.813 |
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| 2013 |
Gopalakrishnan S, Majumder K, Predeus A, Huang Y, Koues OI, Verma-Gaur J, Loguercio S, Su AI, Feeney AJ, Artyomov MN, Oltz EM. Unifying model for molecular determinants of the preselection Vβ repertoire. Proceedings of the National Academy of Sciences of the United States of America. 110: E3206-15. PMID 23918392 DOI: 10.1073/Pnas.1304048110 |
0.721 |
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| 2013 |
Choi NM, Loguercio S, Verma-Gaur J, Degner SC, Torkamani A, Su AI, Oltz EM, Artyomov M, Feeney AJ. Deep sequencing of the murine IgH repertoire reveals complex regulation of nonrandom V gene rearrangement frequencies. Journal of Immunology (Baltimore, Md. : 1950). 191: 2393-402. PMID 23898036 DOI: 10.4049/Jimmunol.1301279 |
0.722 |
|
| 2013 |
Good BM, Su AI. Crowdsourcing for bioinformatics. Bioinformatics (Oxford, England). 29: 1925-33. PMID 23782614 DOI: 10.1093/Bioinformatics/Btt333 |
0.663 |
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| 2013 |
Clarke EL, Loguercio S, Good BM, Su AI. A task-based approach for Gene Ontology evaluation. Journal of Biomedical Semantics. 4: S4. PMID 23734599 DOI: 10.1186/2041-1480-4-S1-S4 |
0.804 |
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| 2013 |
Shoulders MD, Ryno LM, Genereux JC, Moresco JJ, Tu PG, Wu C, Yates JR, Su AI, Kelly JW, Wiseman RL. Stress-independent activation of XBP1s and/or ATF6 reveals three functionally diverse ER proteostasis environments. Cell Reports. 3: 1279-92. PMID 23583182 DOI: 10.1016/J.Celrep.2013.03.024 |
0.495 |
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| 2013 |
Wu C, Macleod I, Su AI. BioGPS and MyGene.info: organizing online, gene-centric information. Nucleic Acids Research. 41: D561-5. PMID 23175613 DOI: 10.1093/Nar/Gks1114 |
0.584 |
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| 2013 |
Grogan SP, Duffy SF, Pauli C, Koziol JA, Su AI, D'Lima DD, Lotz MK. Zone-specific gene expression patterns in articular cartilage. Arthritis and Rheumatism. 65: 418-28. PMID 23124445 DOI: 10.1002/Art.37760 |
0.315 |
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| 2013 |
Loguercio S, Good BM, Su AI. Correction: Dizeez: An Online Game for Human Gene-Disease Annotation Plos One. 8. DOI: 10.1371/Annotation/Efa93B55-C8F0-4943-B922-A585D68F0Bd0 |
0.779 |
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| 2012 |
Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, et al. A gene expression atlas of the domestic pig. Bmc Biology. 10: 90. PMID 23153189 DOI: 10.1186/1741-7007-10-90 |
0.549 |
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| 2012 |
Miller E, Yang J, DeRan M, Wu C, Su AI, Bonamy GM, Liu J, Peters EC, Wu X. Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP. Chemistry & Biology. 19: 955-62. PMID 22884261 DOI: 10.1016/J.Chembiol.2012.07.005 |
0.6 |
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| 2012 |
Ringwald M, Wu C, Su AI. BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 550-8. PMID 22847375 DOI: 10.1007/S00335-012-9408-0 |
0.589 |
|
| 2012 |
Good BM, Clarke EL, Loguercio S, Su AI. Linking genes to diseases with a SNPedia-Gene Wiki mashup. Journal of Biomedical Semantics. 3: S6. PMID 22541597 DOI: 10.1186/2041-1480-3-S1-S6 |
0.806 |
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| 2012 |
Good BM, Clarke EL, Loguercio S, Su AI. Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database : the Journal of Biological Databases and Curation. 2012: bar060. PMID 22434829 DOI: 10.1093/Database/Bar060 |
0.808 |
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| 2012 |
Good BM, Clarke EL, de Alfaro L, Su AI. The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Research. 40: D1255-61. PMID 22075991 DOI: 10.1093/Nar/Gkr925 |
0.69 |
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| 2012 |
Good BM, Loguercio S, Nanis M, Su AI. genegames.org: High-throughput access to biological knowledge and reasoning through online games Proceedings - 2012 Ieee 2nd Conference On Healthcare Informatics, Imaging and Systems Biology, Hisb 2012. 145. DOI: 10.1109/HISB.2012.70 |
0.781 |
|
| 2011 |
Good BM, Su AI. Games with a scientific purpose. Genome Biology. 12: 135. PMID 22204700 DOI: 10.1186/Gb-2011-12-12-135 |
0.613 |
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| 2011 |
Good BM, Howe DG, Lin SM, Kibbe WA, Su AI. Mining the Gene Wiki for functional genomic knowledge. Bmc Genomics. 12: 603. PMID 22165947 DOI: 10.1186/1471-2164-12-603 |
0.707 |
|
| 2011 |
Hu Y, Galkin AV, Wu C, Reddy V, Su AI. CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma. Plos One. 6: e25807. PMID 22016777 DOI: 10.1371/Journal.Pone.0025807 |
0.571 |
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| 2011 |
Dost B, Wu C, Su A, Bafna V. TCLUST: a fast method for clustering genome-scale expression data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 808-18. PMID 20479508 DOI: 10.1109/Tcbb.2010.34 |
0.541 |
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| 2011 |
Barretina J, Stransky N, Caponigro G, Kim S, Margolin A, Venkhatesan K, Kryukov G, Berger M, Monahan J, Morais P, Meltzer J, Mahan S, Sonkin D, Raman P, Jones M, ... ... Su A, et al. Abstract 5455: Integrative analysis of the Cancer Cell Line Encyclopedia reveals genetic and transcriptional predictors of compound sensitivity Cancer Research. 71: 5455-5455. DOI: 10.1158/1538-7445.Am2011-5455 |
0.34 |
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| 2010 |
Loguercio S, Overall RW, Michaelson JJ, Wiltshire T, Pletcher MT, Miller BH, Walker JR, Kempermann G, Su AI, Beyer A. Integrative analysis of low- and high-resolution eQTL. Plos One. 5: e13920. PMID 21085707 DOI: 10.1371/Journal.Pone.0013920 |
0.729 |
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| 2010 |
Gonzalez R, Jennings LL, Knuth M, Orth AP, Klock HE, Ou W, Feuerhelm J, Hull MV, Koesema E, Wang Y, Zhang J, Wu C, Cho CY, Su AI, Batalov S, et al. Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency. Proceedings of the National Academy of Sciences of the United States of America. 107: 3552-7. PMID 20133595 DOI: 10.1073/Pnas.0914019107 |
0.789 |
|
| 2010 |
Huss JW, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI. The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Research. 38: D633-9. PMID 19755503 DOI: 10.1093/Nar/Gkp760 |
0.775 |
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| 2010 |
Barretina J, Caponigro G, Kim S, Stransky N, Venkhatesan K, Reddy V, Berger M, Morrissey M, Morais P, Meltzer J, Thibault J, Mahan S, Sonkin D, Che J, Raman P, ... ... Su A, et al. Abstract 2620: The Cancer Cell Line Encyclopedia project: From integrative cancer genomics to personalized cancer therapy Cancer Research. 70: 2620-2620. DOI: 10.1158/1538-7445.Am10-2620 |
0.339 |
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| 2010 |
Stransky N, Venkhatesan K, Morrissey M, Barretina J, Raman P, Getz G, Berger M, Johannessen C, Callahan A, Morais P, Mahan S, Gupta S, Onofrio R, Sougnez C, Winckler W, ... ... Su A, et al. Abstract 105: Integrative analysis of genomic and pharmacologic data from the Cancer Cell Line Encyclopedia Cancer Research. 70: 105-105. DOI: 10.1158/1538-7445.Am10-105 |
0.374 |
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| 2010 |
Stransky N, Venkatesan K, Barretina J, Caponigro G, Margolin A, Morrissey M, Raman P, Getz G, Berger M, Johannessen C, Callahan A, Morais P, Mahan S, Gupta S, Onofrio R, ... ... Su A, et al. Abstract PR4: Integrative analysis of genomic and pharmacologic data from the Cancer Cell Line Encyclopedia Clinical Cancer Research. 16. DOI: 10.1158/1078-0432.Tcmusa10-Pr4 |
0.352 |
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| 2009 |
Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, Hodge CL, Haase J, Janes J, Huss JW, Su AI. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biology. 10: R130. PMID 19919682 DOI: 10.1186/Gb-2009-10-11-R130 |
0.808 |
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| 2009 |
Zhang EE, Liu AC, Hirota T, Miraglia LJ, Welch G, Pongsawakul PY, Liu X, Atwood A, Huss JW, Janes J, Su AI, Hogenesch JB, Kay SA. A genome-wide RNAi screen for modifiers of the circadian clock in human cells. Cell. 139: 199-210. PMID 19765810 DOI: 10.1016/J.Cell.2009.08.031 |
0.796 |
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| 2009 |
Williams R, Lim JE, Harr B, Wing C, Walters R, Distler MG, Teschke M, Wu C, Wiltshire T, Su AI, Sokoloff G, Tarantino LM, Borevitz JO, Palmer AA. A common and unstable copy number variant is associated with differences in Glo1 expression and anxiety-like behavior. Plos One. 4: e4649. PMID 19266052 DOI: 10.1371/Journal.Pone.0004649 |
0.505 |
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| 2009 |
Tang PL, Cheung CL, Sham PC, McClurg P, Lee B, Chan SY, Smith DK, Tanner JA, Su AI, Cheah KS, Kung AW, Song YQ. Genome-wide haplotype association mapping in mice identifies a genetic variant in CER1 associated with BMD and fracture in southern Chinese women. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 24: 1013-21. PMID 19113921 DOI: 10.1359/Jbmr.081258 |
0.356 |
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| 2008 |
Breitling R, Li Y, Tesson BM, Fu J, Wu C, Wiltshire T, Gerrits A, Bystrykh LV, de Haan G, Su AI, Jansen RC. Genetical genomics: spotlight on QTL hotspots. Plos Genetics. 4: e1000232. PMID 18949031 DOI: 10.1371/Journal.Pgen.1000232 |
0.542 |
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| 2008 |
Hogenesch JB, Su AI. Clock gene wikis available: join the "long tail". Journal of Biological Rhythms. 23: 456-7. PMID 18838611 DOI: 10.1177/0748730408322866 |
0.752 |
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| 2008 |
Huss JW, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI. A gene wiki for community annotation of gene function. Plos Biology. 6: e175. PMID 18613750 DOI: 10.1371/Journal.Pbio.0060175 |
0.564 |
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| 2008 |
Wu C, Delano DL, Mitro N, Su SV, Janes J, McClurg P, Batalov S, Welch GL, Zhang J, Orth AP, Walker JR, Glynne RJ, Cooke MP, Takahashi JS, Shimomura K, ... ... Su AI, et al. Gene set enrichment in eQTL data identifies novel annotations and pathway regulators. Plos Genetics. 4: e1000070. PMID 18464898 DOI: 10.1371/Journal.Pgen.1000070 |
0.795 |
|
| 2007 |
Su AI, Hogenesch JB. Power-law-like distributions in biomedical publications and research funding. Genome Biology. 8: 404. PMID 17472739 DOI: 10.1186/Gb-2007-8-4-404 |
0.763 |
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| 2007 |
McClurg P, Janes J, Wu C, Delano DL, Walker JR, Batalov S, Takahashi JS, Shimomura K, Kohsaka A, Bass J, Wiltshire T, Su AI. Genomewide association analysis in diverse inbred mice: power and population structure. Genetics. 176: 675-83. PMID 17409088 DOI: 10.1534/Genetics.106.066241 |
0.775 |
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| 2006 |
Lee JW, Lee JS, Kang M, Su AI, Chang YT. Visual artificial tongue for quantitative metal-cation analysis by an off-the-shelf dye array. Chemistry (Weinheim An Der Bergstrasse, Germany). 12: 5691-6. PMID 16715541 DOI: 10.1002/Chem.200600307 |
0.515 |
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| 2006 |
Melnick JS, Janes J, Kim S, Chang JY, Sipes DG, Gunderson D, Jarnes L, Matzen JT, Garcia ME, Hood TL, Beigi R, Xia G, Harig RA, Asatryan H, Yan SF, ... ... Su AI, et al. An efficient rapid system for profiling the cellular activities of molecular libraries. Proceedings of the National Academy of Sciences of the United States of America. 103: 3153-8. PMID 16492761 DOI: 10.1073/Pnas.0511292103 |
0.774 |
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| 2006 |
Sagan SM, Rouleau Y, Leggiadro C, Supekova L, Schultz PG, Su AI, Pezacki JP. The influence of cholesterol and lipid metabolism on host cell structure and hepatitis C virus replication. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 84: 67-79. PMID 16462891 DOI: 10.1139/O05-149 |
0.51 |
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| 2005 |
Yang J, Su AI, Li WH. Gene expression evolves faster in narrowly than in broadly expressed mammalian genes. Molecular Biology and Evolution. 22: 2113-8. PMID 15987875 DOI: 10.1093/Molbev/Msi206 |
0.328 |
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| 2005 |
Gurkan C, Lapp H, Alory C, Su AI, Hogenesch JB, Balch WE. Large-scale profiling of Rab GTPase trafficking networks: the membrome. Molecular Biology of the Cell. 16: 3847-64. PMID 15944222 DOI: 10.1091/Mbc.E05-01-0062 |
0.744 |
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| 2005 |
Wilkens SJ, Janes J, Su AI. HierS: hierarchical scaffold clustering using topological chemical graphs. Journal of Medicinal Chemistry. 48: 3182-93. PMID 15857124 DOI: 10.1021/Jm049032D |
0.767 |
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| 2005 |
Bystrykh L, Weersing E, Dontje B, Sutton S, Pletcher MT, Wiltshire T, Su AI, Vellenga E, Wang J, Manly KF, Lu L, Chesler EJ, Alberts R, Jansen RC, Williams RW, et al. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nature Genetics. 37: 225-32. PMID 15711547 DOI: 10.1038/Ng1497 |
0.357 |
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| 2005 |
Zhong JF, Zhao Y, Sutton S, Su A, Zhan Y, Zhu L, Yan C, Gallaher T, Johnston PB, Anderson WF, Cooke MP. Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 102: 2448-53. PMID 15695585 DOI: 10.1073/Pnas.0409459102 |
0.327 |
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| 2004 |
Pletcher MT, McClurg P, Batalov S, Su AI, Barnes SW, Lagler E, Korstanje R, Wang X, Nusskern D, Bogue MA, Mural RJ, Paigen B, Wiltshire T. Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse. Plos Biology. 2: e393. PMID 15534693 DOI: 10.1371/Journal.Pbio.0020393 |
0.306 |
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| 2004 |
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 6062-7. PMID 15075390 DOI: 10.1073/Pnas.0400782101 |
0.769 |
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| 2004 |
Walker JR, Su AI, Self DW, Hogenesch JB, Lapp H, Maier R, Hoyer D, Bilbe G. Applications of a rat multiple tissue gene expression data set. Genome Research. 14: 742-9. PMID 15060018 DOI: 10.1101/Gr.2161804 |
0.773 |
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| 2003 |
Conkright MD, Guzmán E, Flechner L, Su AI, Hogenesch JB, Montminy M. Genome-wide analysis of CREB target genes reveals a core promoter requirement for cAMP responsiveness. Molecular Cell. 11: 1101-8. PMID 12718894 DOI: 10.1016/S1097-2765(03)00134-5 |
0.758 |
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| 2002 |
Su AI, Pezacki JP, Wodicka L, Brideau AD, Supekova L, Thimme R, Wieland S, Bukh J, Purcell RH, Schultz PG, Chisari FV. Genomic analysis of the host response to hepatitis C virus infection. Proceedings of the National Academy of Sciences of the United States of America. 99: 15669-74. PMID 12441396 DOI: 10.1073/Pnas.202608199 |
0.496 |
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| 2002 |
Frierson HF, El-Naggar AK, Welsh JB, Sapinoso LM, Su AI, Cheng J, Saku T, Moskaluk CA, Hampton GM. Large scale molecular analysis identifies genes with altered expression in salivary adenoid cystic carcinoma. The American Journal of Pathology. 161: 1315-23. PMID 12368205 DOI: 10.1016/S0002-9440(10)64408-2 |
0.341 |
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| 2002 |
Su AI, Guidotti LG, Pezacki JP, Chisari FV, Schultz PG. Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice. Proceedings of the National Academy of Sciences of the United States of America. 99: 11181-6. PMID 12177410 DOI: 10.1073/Pnas.122359899 |
0.567 |
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| 2002 |
Supekova L, Pezacki JP, Su AI, Loweth CJ, Riedl R, Geierstanger B, Schultz PG, Wemmer DE. Genomic effects of polyamide/DNA interactions on mRNA expression. Chemistry & Biology. 9: 821-7. PMID 12144926 DOI: 10.1016/S1074-5521(02)00174-6 |
0.792 |
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| 2002 |
Panda S, Antoch MP, Miller BH, Su AI, Schook AB, Straume M, Schultz PG, Kay SA, Takahashi JS, Hogenesch JB. Coordinated transcription of key pathways in the mouse by the circadian clock. Cell. 109: 307-20. PMID 12015981 DOI: 10.1016/S0092-8674(02)00722-5 |
0.782 |
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| 2002 |
Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, Wiltshire T, Orth AP, Vega RG, Sapinoso LM, Moqrich A, Patapoutian A, Hampton GM, Schultz PG, Hogenesch JB. Large-scale analysis of the human and mouse transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 99: 4465-70. PMID 11904358 DOI: 10.1073/Pnas.012025199 |
0.814 |
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| 2001 |
Chang YT, Wignall SM, Rosania GR, Gray NS, Hanson SR, Su AI, Merlie J, Moon HS, Sangankar SB, Perez O, Heald R, Schultz PG. Synthesis and biological evaluation of myoseverin derivatives: microtubule assembly inhibitors. Journal of Medicinal Chemistry. 44: 4497-500. PMID 11741468 DOI: 10.1021/Jm010451+ |
0.764 |
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| 2001 |
Su AI, Welsh JB, Sapinoso LM, Kern SG, Dimitrov P, Lapp H, Schultz PG, Powell SM, Moskaluk CA, Frierson HF, Hampton GM. Molecular classification of human carcinomas by use of gene expression signatures. Cancer Research. 61: 7388-93. PMID 11606367 |
0.52 |
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| 2001 |
Hogenesch JB, Ching KA, Batalov S, Su AI, Walker JR, Zhou Y, Kay SA, Schultz PG, Cooke MP. A comparison of the Celera and Ensembl predicted gene sets reveals little overlap in novel genes. Cell. 106: 413-5. PMID 11534548 DOI: 10.1016/S0092-8674(01)00467-6 |
0.791 |
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| 2001 |
Su AI, Lorber DM, Weston GS, Baase WA, Matthews BW, Shoichet BK. Docking molecules by families to increase the diversity of hits in database screens: computational strategy and experimental evaluation. Proteins. 42: 279-93. PMID 11119652 DOI: 10.1002/1097-0134(20010201)42:2<279::Aid-Prot150>3.0.Co;2-U |
0.5 |
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