| Year |
Citation |
Score |
| 2024 |
Chen LL, Ingolia NT, Insco ML, Li JB, Oberdoerffer S, Weeks KM. Voices: Challenges and opportunities in RNA biology. Cell Chemical Biology. 31: 10-13. PMID 38242091 DOI: 10.1016/j.chembiol.2023.12.015 |
0.626 |
|
| 2023 |
Xiang Y, Huang W, Tan L, Chen T, He Y, Irving PS, Weeks KM, Zhang QC, Dong X. Pervasive downstream RNA hairpins dynamically dictate start-codon selection. Nature. PMID 37674078 DOI: 10.1038/s41586-023-06500-y |
0.521 |
|
| 2023 |
Mustoe AM, Weidmann CA, Weeks KM. Correction to "Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis". Accounts of Chemical Research. 56: 1684. PMID 37283502 DOI: 10.1021/acs.accounts.3c00304 |
0.552 |
|
| 2023 |
Irving PS, Weeks KM. RNAvigate: Efficient exploration of RNA chemical probing datasets. Biorxiv : the Preprint Server For Biology. PMID 37162917 DOI: 10.1101/2023.04.25.538311 |
0.669 |
|
| 2023 |
Boerneke MA, Gokhale NS, Horner SM, Weeks KM. Structure-first identification of RNA elements that regulate dengue virus genome architecture and replication. Proceedings of the National Academy of Sciences of the United States of America. 120: e2217053120. PMID 37011200 DOI: 10.1073/pnas.2217053120 |
0.609 |
|
| 2023 |
Mustoe AM, Weidmann CA, Weeks KM. Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis. Accounts of Chemical Research. 56: 763-775. PMID 36917683 DOI: 10.1021/acs.accounts.2c00782 |
0.695 |
|
| 2023 |
Koehn JT, Felder S, Weeks KM. Innovations in targeting RNA by fragment-based ligand discovery. Current Opinion in Structural Biology. 79: 102550. PMID 36863268 DOI: 10.1016/j.sbi.2023.102550 |
0.894 |
|
| 2022 |
Grayeski PJ, Weidmann CA, Kumar J, Lackey L, Mustoe AM, Busan S, Laederach A, Weeks KM. Global 5'-UTR RNA structure regulates translation of a SERPINA1 mRNA. Nucleic Acids Research. 50: 9689-9704. PMID 36107773 DOI: 10.1093/nar/gkac739 |
0.498 |
|
| 2022 |
Roden CA, Dai Y, Giannetti CA, Seim I, Lee M, Sealfon R, McLaughlin GA, Boerneke MA, Iserman C, Wey SA, Ekena JL, Troyanskaya OG, Weeks KM, You L, Chilkoti A, et al. Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures. Nucleic Acids Research. PMID 35871289 DOI: 10.1093/nar/gkac596 |
0.588 |
|
| 2022 |
Arney JW, Weeks KM. RNA-Ligand Interactions Quantified by Surface Plasmon Resonance with Reference Subtraction. Biochemistry. PMID 35802500 DOI: 10.1021/acs.biochem.2c00177 |
0.574 |
|
| 2022 |
Kumar J, Lackey L, Waldern JM, Dey A, Mustoe AM, Weeks K, Mathews DH, Laederach A. Quantitative prediction of variant effects on alternative splicing in using endogenous pre-messenger RNA structure probing. Elife. 11. PMID 35695373 DOI: 10.7554/eLife.73888 |
0.457 |
|
| 2022 |
Zeller MJ, Favorov O, Li K, Nuthanakanti A, Hussein D, Michaud A, Lafontaine DA, Busan S, Serganov A, Aubé J, Weeks KM. SHAPE-enabled fragment-based ligand discovery for RNA. Proceedings of the National Academy of Sciences of the United States of America. 119: e2122660119. PMID 35561226 DOI: 10.1073/pnas.2122660119 |
0.581 |
|
| 2022 |
Olson SW, Turner AW, Arney JW, Saleem I, Weidmann CA, Margolis DM, Weeks KM, Mustoe AM. Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP. Molecular Cell. PMID 35320755 DOI: 10.1016/j.molcel.2022.02.009 |
0.65 |
|
| 2022 |
Stephenson W, Razaghi R, Busan S, Weeks KM, Timp W, Smibert P. Direct detection of RNA modifications and structure using single-molecule nanopore sequencing. Cell Genomics. 2. PMID 35252946 DOI: 10.1016/j.xgen.2022.100097 |
0.658 |
|
| 2022 |
Przanowska RK, Weidmann CA, Saha S, Cichewicz MA, Jensen KN, Przanowski P, Irving PS, Janes KA, Guertin MJ, Weeks KM, Dutta A. Distinct MUNC lncRNA structural domains regulate transcription of different promyogenic factors. Cell Reports. 38: 110361. PMID 35172143 DOI: 10.1016/j.celrep.2022.110361 |
0.482 |
|
| 2022 |
Zeller MJ, Nuthanakanti A, Li K, Aubé J, Serganov A, Weeks KM. Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery. Acs Chemical Biology. 17: 438-448. PMID 35060698 DOI: 10.1021/acschembio.1c00880 |
0.558 |
|
| 2021 |
Christy TW, Giannetti CA, Laederach A, Weeks KM. Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper. Plos Computational Biology. 17: e1009632. PMID 34905538 DOI: 10.1371/journal.pcbi.1009632 |
0.566 |
|
| 2021 |
Weeks KM. Piercing the fog of the RNA structure-ome. Science (New York, N.Y.). 373: 964-965. PMID 34446594 DOI: 10.1126/science.abk1971 |
0.698 |
|
| 2021 |
Roden CA, Dai Y, Seim I, Lee M, Sealfon R, McLaughlin GA, Boerneke MA, Iserman C, Wey SA, Ekena JL, Troyanskaya OG, Weeks KM, You L, Chilkoti A, Gladfelter AS. Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures. Biorxiv : the Preprint Server For Biology. PMID 34159327 DOI: 10.1101/2021.06.14.448452 |
0.514 |
|
| 2021 |
Christy TW, Giannetti CA, Houlihan G, Smola MJ, Rice GM, Wang J, Dokholyan NV, Laederach A, Holliger P, Weeks KM. Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP. Biochemistry. PMID 34121404 DOI: 10.1021/acs.biochem.1c00270 |
0.715 |
|
| 2021 |
Weeks KM. SHAPE Directed Discovery of New Functions in Large RNAs. Accounts of Chemical Research. 54: 2502-2517. PMID 33960770 DOI: 10.1021/acs.accounts.1c00118 |
0.725 |
|
| 2021 |
Busan S, Weeks KM. Visualization of lncRNA and mRNA Structure Models Within the Integrative Genomics Viewer. Methods in Molecular Biology (Clifton, N.J.). 2254: 15-25. PMID 33326067 DOI: 10.1007/978-1-0716-1158-6_2 |
0.639 |
|
| 2020 |
Iserman C, Roden CA, Boerneke MA, Sealfon RSG, McLaughlin GA, Jungreis I, Fritch EJ, Hou YJ, Ekena J, Weidmann CA, Theesfeld CL, Kellis M, Troyanskaya OG, Baric RS, Sheahan TP, ... Weeks KM, et al. Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid. Molecular Cell. PMID 33290746 DOI: 10.1016/j.molcel.2020.11.041 |
0.483 |
|
| 2020 |
Ehrhardt JE, Weeks KM. Time-Resolved, Single-Molecule, Correlated Chemical Probing of RNA. Journal of the American Chemical Society. PMID 33095984 DOI: 10.1021/jacs.0c06221 |
0.695 |
|
| 2020 |
Weidmann CA, Mustoe AM, Jariwala PB, Calabrese JM, Weeks KM. Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA. Nature Biotechnology. PMID 33077962 DOI: 10.1038/s41587-020-0709-7 |
0.538 |
|
| 2020 |
Iserman C, Roden C, Boerneke M, Sealfon R, McLaughlin G, Jungreis I, Park C, Boppana A, Fritch E, Hou YJ, Theesfeld C, Troyanskaya OG, Baric RS, Sheahan TP, Weeks K, et al. Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate. Biorxiv : the Preprint Server For Biology. PMID 32587965 DOI: 10.1101/2020.06.11.147199 |
0.468 |
|
| 2020 |
Schmidt K, Weidmann CA, Hilimire TA, Yee E, Hatfield BM, Schneekloth JS, Weeks KM, Novina CD. Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor. Cell Reports. 30: 541-554.e5. PMID 31940495 DOI: 10.1016/J.Celrep.2019.12.011 |
0.567 |
|
| 2019 |
Mustoe AM, Lama NN, Irving PS, Olson SW, Weeks KM. RNA base-pairing complexity in living cells visualized by correlated chemical probing. Proceedings of the National Academy of Sciences of the United States of America. PMID 31744869 DOI: 10.1073/Pnas.1905491116 |
0.71 |
|
| 2019 |
Sengupta A, Rice GM, Weeks KM. Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells. Plos Biology. 17: e3000393. PMID 31487286 DOI: 10.1371/Journal.Pbio.3000393 |
0.645 |
|
| 2019 |
Boerneke MA, Ehrhardt JE, Weeks KM. Physical and Functional Analysis of Viral RNA Genomes by SHAPE. Annual Review of Virology. PMID 31337286 DOI: 10.1146/Annurev-Virology-092917-043315 |
0.69 |
|
| 2019 |
Giannetti C, Busan S, Weidmann C, Weeks KM. SHAPE probing reveals human ribosomal RNAs are largely unfolded in solution. Biochemistry. PMID 31305988 DOI: 10.1021/Acs.Biochem.9B00076 |
0.638 |
|
| 2019 |
Dethoff EA, Weeks KM. Effects of Refolding on Large-Scale RNA Structure. Biochemistry. PMID 31268687 DOI: 10.1021/Acs.Biochem.8B01219 |
0.77 |
|
| 2019 |
Busan S, Weidmann C, Sengupta A, Weeks KM. Guidelines for SHAPE reagent choice and detection strategy for RNA structure probing studies. Biochemistry. PMID 31117385 DOI: 10.1021/Acs.Biochem.8B01218 |
0.654 |
|
| 2019 |
Tolbert M, Parish PC, Olson SW, Mitrea DM, Weeks K, Kriwacki RW. Molecular Insights into the Role of RNA Structure in the Phase Separated Nucleolus Biophysical Journal. 116: 348a. DOI: 10.1016/J.Bpj.2018.11.1898 |
0.631 |
|
| 2018 |
Boerneke MA, Weeks KM. High-Throughput Explorations of RNA Structural Modularity. Biochemistry. 57: 6129-6131. PMID 30373370 DOI: 10.1021/Acs.Biochem.8B00999 |
0.726 |
|
| 2018 |
Dethoff EA, Boerneke MA, Gokhale NS, Muhire BM, Martin DP, Sacco MT, McFadden MJ, Weinstein JB, Messer WB, Horner SM, Weeks KM. Pervasive tertiary structure in the dengue virus RNA genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 30341219 DOI: 10.1073/Pnas.1716689115 |
0.737 |
|
| 2018 |
Kirk JM, Kim SO, Inoue K, Smola MJ, Lee DM, Schertzer MD, Wooten JS, Baker AR, Sprague D, Collins DW, Horning CR, Wang S, Chen Q, Weeks KM, Mucha PJ, et al. Functional classification of long non-coding RNAs by k-mer content. Nature Genetics. PMID 30224646 DOI: 10.1038/S41588-018-0207-8 |
0.452 |
|
| 2018 |
Warner KD, Hajdin CE, Weeks KM. Principles for targeting RNA with drug-like small molecules. Nature Reviews. Drug Discovery. PMID 29977051 DOI: 10.1038/Nrd.2018.93 |
0.883 |
|
| 2018 |
Mustoe AM, Corley M, Laederach A, Weeks KM. Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans. Biochemistry. PMID 29894169 DOI: 10.1021/Acs.Biochem.8B00395 |
0.645 |
|
| 2018 |
Smola MJ, Weeks KM. In-cell RNA structure probing with SHAPE-MaP. Nature Protocols. 13: 1181-1195. PMID 29725122 DOI: 10.1038/Nprot.2018.010 |
0.69 |
|
| 2018 |
Langdon EM, Qiu Y, Ghanbari Niaki A, McLaughlin GA, Weidmann C, Gerbich TM, Smith JA, Crutchley JM, Termini CM, Weeks KM, Myong S, Gladfelter AS. mRNA structure determines specificity of a polyQ-driven phase separation. Science (New York, N.Y.). PMID 29650703 DOI: 10.1126/Science.Aar7432 |
0.712 |
|
| 2018 |
Mustoe AM, Busan S, Rice GM, Hajdin CE, Peterson BK, Ruda VM, Kubica N, Nutiu R, Baryza JL, Weeks KM. Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing. Cell. PMID 29551268 DOI: 10.1016/J.Cell.2018.02.034 |
0.823 |
|
| 2017 |
Williams B, Zhao B, Tandon A, Ding F, Weeks KM, Zhang Q, Dokholyan NV. Structure modeling of RNA using sparse NMR constraints. Nucleic Acids Research. PMID 29165648 DOI: 10.1093/Nar/Gkx1058 |
0.743 |
|
| 2017 |
Liu Y, Chen J, Nikolaitchik OA, Desimmie BA, Busan S, Pathak VK, Weeks KM, Hu WS. The roles of five conserved lentiviral RNA structures in HIV-1 replication. Virology. 514: 1-8. PMID 29128752 DOI: 10.1016/J.Virol.2017.10.020 |
0.58 |
|
| 2017 |
Busan S, Weeks KM. Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2. Rna (New York, N.Y.). PMID 29114018 DOI: 10.1261/Rna.061945.117 |
0.506 |
|
| 2017 |
Corley M, Solem A, Phillips G, Lackey L, Ziehr B, Vincent HA, Mustoe AM, Ramos SBV, Weeks KM, Moorman NJ, Laederach A. An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 29109288 DOI: 10.1073/Pnas.1706539114 |
0.448 |
|
| 2017 |
Busan S, Weeks KM. Visualization of RNA structure models within the Integrative Genomics Viewer. Rna (New York, N.Y.). PMID 28428329 DOI: 10.1261/Rna.060194.116 |
0.682 |
|
| 2017 |
Larman BC, Dethoff EA, Weeks KM. Packaged and free STMV RNA genomes adopt distinct conformational states. Biochemistry. PMID 28332826 DOI: 10.1021/Acs.Biochem.6B01166 |
0.682 |
|
| 2017 |
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Feng D, ... ... Weeks KM, et al. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. Rna (New York, N.Y.). PMID 28138060 DOI: 10.1261/Rna.060368.116 |
0.801 |
|
| 2016 |
Krokhotin A, Mustoe AM, Weeks KM, Dokholyan NV. DIRECT IDENTIFICATION OF BASE-PAIRED RNA NUCLEOTIDES BY CORRELATED CHEMICAL PROBING. Rna (New York, N.Y.). PMID 27803152 DOI: 10.1261/Rna.058586.116 |
0.682 |
|
| 2016 |
Smola MJ, Christy TW, Inoue K, Nicholson CO, Friedersdorf M, Keene JD, Lee DM, Calabrese JM, Weeks KM. SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 27578869 DOI: 10.1073/Pnas.1600008113 |
0.701 |
|
| 2016 |
Weidmann CA, Mustoe AM, Weeks KM. Direct Duplex Detection: An Emerging Tool in the RNA Structure Analysis Toolbox. Trends in Biochemical Sciences. PMID 27427309 DOI: 10.1016/J.Tibs.2016.07.001 |
0.743 |
|
| 2016 |
Kariisa AT, Weeks K, Tamayo R. The RNA Domain Vc1 Regulates Downstream Gene Expression in Response to Cyclic Diguanylate in Vibrio cholerae. Plos One. 11: e0148478. PMID 26849223 DOI: 10.1371/Journal.Pone.0148478 |
0.371 |
|
| 2015 |
Smola MJ, Calabrese JM, Weeks KM. Detection of RNA-Protein Interactions in Living Cells with SHAPE. Biochemistry. PMID 26544910 DOI: 10.1021/Acs.Biochem.5B00977 |
0.701 |
|
| 2015 |
Lu YF, Mauger DM, Goldstein DB, Urban TJ, Weeks KM, Bradrick SS. IFNL3 mRNA structure is remodeled by a functional non-coding polymorphism associated with hepatitis C virus clearance. Scientific Reports. 5: 16037. PMID 26531896 DOI: 10.1038/Srep16037 |
0.421 |
|
| 2015 |
Tyrrell J, Weeks KM, Pielak GJ. Challenge of Mimicking the Influences of the Cellular Environment on RNA Structure by PEG-Induced Macromolecular Crowding. Biochemistry. 54: 6447-53. PMID 26430778 DOI: 10.1021/Acs.Biochem.5B00767 |
0.7 |
|
| 2015 |
Smola MJ, Rice GM, Busan S, Siegfried NA, Weeks KM. Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis. Nature Protocols. 10: 1643-69. PMID 26426499 DOI: 10.1038/Nprot.2015.103 |
0.615 |
|
| 2015 |
Kutchko KM, Sanders W, Ziehr B, Phillips G, Solem A, Halvorsen M, Weeks KM, Moorman N, Laederach A. Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR. Rna (New York, N.Y.). 21: 1274-85. PMID 25999316 DOI: 10.1261/Rna.049221.114 |
0.623 |
|
| 2015 |
Lavender CA, Gorelick RJ, Weeks KM. Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes. Plos Computational Biology. 11: e1004230. PMID 25992893 DOI: 10.1371/Journal.Pcbi.1004230 |
0.555 |
|
| 2015 |
Lavender CA, Lorenz R, Zhang G, Tamayo R, Hofacker IL, Weeks KM. Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA. Plos Computational Biology. 11: e1004126. PMID 25992778 DOI: 10.1371/Journal.Pcbi.1004126 |
0.694 |
|
| 2015 |
Weeks KM. RNA clubs. Rna (New York, N.Y.). 21: 760-1. PMID 25780225 DOI: 10.1261/rna.050476.115 |
0.663 |
|
| 2015 |
Mauger DM, Golden M, Yamane D, Williford S, Lemon SM, Martin DP, Weeks KM. Functionally conserved architecture of hepatitis C virus RNA genomes. Proceedings of the National Academy of Sciences of the United States of America. 112: 3692-7. PMID 25775547 DOI: 10.1073/Pnas.1416266112 |
0.621 |
|
| 2015 |
McGinnis JL, Liu Q, Lavender CA, Devaraj A, McClory SP, Fredrick K, Weeks KM. In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proceedings of the National Academy of Sciences of the United States of America. 112: 2425-30. PMID 25675474 DOI: 10.1073/Pnas.1411514112 |
0.829 |
|
| 2015 |
Weeks KM. Review toward all RNA structures, concisely. Biopolymers. 103: 438-48. PMID 25546503 DOI: 10.1002/Bip.22601 |
0.601 |
|
| 2015 |
Taylor AI, Pinheiro VB, Smola MJ, Morgunov AS, Peak-Chew S, Cozens C, Weeks KM, Herdewijn P, Holliger P. Catalysts from synthetic genetic polymers. Nature. 518: 427-30. PMID 25470036 DOI: 10.1038/Nature13982 |
0.464 |
|
| 2014 |
Rice GM, Busan S, Karabiber F, Favorov OV, Weeks KM. SHAPE analysis of small RNAs and riboswitches. Methods in Enzymology. 549: 165-87. PMID 25432749 DOI: 10.1016/B978-0-12-801122-5.00008-8 |
0.723 |
|
| 2014 |
Homan PJ, Tandon A, Rice GM, Ding F, Dokholyan NV, Weeks KM. RNA tertiary structure analysis by 2'-hydroxyl molecular interference. Biochemistry. 53: 6825-33. PMID 25341083 DOI: 10.1021/Bi501218G |
0.903 |
|
| 2014 |
Homan PJ, Favorov OV, Lavender CA, Kursun O, Ge X, Busan S, Dokholyan NV, Weeks KM. Single-molecule correlated chemical probing of RNA. Proceedings of the National Academy of Sciences of the United States of America. 111: 13858-63. PMID 25205807 DOI: 10.1073/Pnas.1407306111 |
0.904 |
|
| 2014 |
Siegfried NA, Busan S, Rice GM, Nelson JA, Weeks KM. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nature Methods. 11: 959-65. PMID 25028896 DOI: 10.1038/Nmeth.3029 |
0.723 |
|
| 2014 |
Low JT, Garcia-Miranda P, Mouzakis KD, Gorelick RJ, Butcher SE, Weeks KM. Structure and dynamics of the HIV-1 frameshift element RNA. Biochemistry. 53: 4282-91. PMID 24926888 DOI: 10.1021/Bi5004926 |
0.797 |
|
| 2014 |
McGinnis JL, Weeks KM. Ribosome RNA assembly intermediates visualized in living cells. Biochemistry. 53: 3237-47. PMID 24818530 DOI: 10.1021/Bi500198B |
0.91 |
|
| 2014 |
Warner KD, Homan P, Weeks KM, Smith AG, Abell C, Ferré-D'Amaré AR. Validating fragment-based drug discovery for biological RNAs: lead fragments bind and remodel the TPP riboswitch specifically. Chemistry & Biology. 21: 591-5. PMID 24768306 DOI: 10.1016/J.Chembiol.2014.03.007 |
0.846 |
|
| 2014 |
Rice GM, Leonard CW, Weeks KM. RNA secondary structure modeling at consistent high accuracy using differential SHAPE. Rna (New York, N.Y.). 20: 846-54. PMID 24742934 DOI: 10.1261/Rna.043323.113 |
0.686 |
|
| 2014 |
Grohman JK, Gorelick RJ, Kottegoda S, Allbritton NL, Rein A, Weeks KM. An immature retroviral RNA genome resembles a kinetically trapped intermediate state. Journal of Virology. 88: 6061-8. PMID 24623442 DOI: 10.1128/Jvi.03277-13 |
0.902 |
|
| 2013 |
Tyrrell J, McGinnis JL, Weeks KM, Pielak GJ. The cellular environment stabilizes adenine riboswitch RNA structure. Biochemistry. 52: 8777-85. PMID 24215455 DOI: 10.1021/Bi401207Q |
0.876 |
|
| 2013 |
Busan S, Weeks KM. Role of context in RNA structure: flanking sequences reconfigure CAG motif folding in huntingtin exon 1 transcripts. Biochemistry. 52: 8219-25. PMID 24199621 DOI: 10.1021/Bi401129R |
0.549 |
|
| 2013 |
Archer EJ, Simpson MA, Watts NJ, O'Kane R, Wang B, Erie DA, McPherson A, Weeks KM. Long-range architecture in a viral RNA genome. Biochemistry. 52: 3182-90. PMID 23614526 DOI: 10.1021/Bi4001535 |
0.649 |
|
| 2013 |
Pollom E, Dang KK, Potter EL, Gorelick RJ, Burch CL, Weeks KM, Swanstrom R. Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs. Plos Pathogens. 9: e1003294. PMID 23593004 DOI: 10.1371/Journal.Ppat.1003294 |
0.606 |
|
| 2013 |
Hajdin CE, Bellaousov S, Huggins W, Leonard CW, Mathews DH, Weeks KM. Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots. Proceedings of the National Academy of Sciences of the United States of America. 110: 5498-503. PMID 23503844 DOI: 10.1073/Pnas.1219988110 |
0.904 |
|
| 2013 |
Mauger DM, Siegfried NA, Weeks KM. The genetic code as expressed through relationships between mRNA structure and protein function. Febs Letters. 587: 1180-8. PMID 23499436 DOI: 10.1016/J.Febslet.2013.03.002 |
0.696 |
|
| 2013 |
Grohman JK, Gorelick RJ, Lickwar CR, Lieb JD, Bower BD, Znosko BM, Weeks KM. A guanosine-centric mechanism for RNA chaperone function. Science (New York, N.Y.). 340: 190-5. PMID 23470731 DOI: 10.1126/Science.1230715 |
0.905 |
|
| 2013 |
Leonard CW, Hajdin CE, Karabiber F, Mathews DH, Favorov OV, Dokholyan NV, Weeks KM. Principles for understanding the accuracy of SHAPE-directed RNA structure modeling. Biochemistry. 52: 588-95. PMID 23316814 DOI: 10.1021/Bi300755U |
0.895 |
|
| 2013 |
Ramachandran S, Ding F, Weeks KM, Dokholyan NV. Statistical analysis of SHAPE-directed RNA secondary structure modeling. Biochemistry. 52: 596-9. PMID 23286327 DOI: 10.1021/Bi300756S |
0.535 |
|
| 2013 |
Karabiber F, McGinnis JL, Favorov OV, Weeks KM. QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis. Rna (New York, N.Y.). 19: 63-73. PMID 23188808 DOI: 10.1261/Rna.036327.112 |
0.841 |
|
| 2012 |
Steen KA, Rice GM, Weeks KM. Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity. Journal of the American Chemical Society. 134: 13160-3. PMID 22852530 DOI: 10.1021/Ja304027M |
0.728 |
|
| 2012 |
Ding F, Lavender CA, Weeks KM, Dokholyan NV. Three-dimensional RNA structure refinement by hydroxyl radical probing. Nature Methods. 9: 603-8. PMID 22504587 DOI: 10.1038/Nmeth.1976 |
0.754 |
|
| 2012 |
McGinnis JL, Dunkle JA, Cate JH, Weeks KM. The mechanisms of RNA SHAPE chemistry. Journal of the American Chemical Society. 134: 6617-24. PMID 22475022 DOI: 10.1021/Ja2104075 |
0.88 |
|
| 2012 |
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, ... ... Weeks KM, et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. Rna (New York, N.Y.). 18: 610-25. PMID 22361291 DOI: 10.1261/Rna.031054.111 |
0.645 |
|
| 2012 |
Low JT, Knoepfel SA, Watts JM, ter Brake O, Berkhout B, Weeks KM. SHAPE-directed discovery of potent shRNA inhibitors of HIV-1. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 820-8. PMID 22314289 DOI: 10.1038/Mt.2011.299 |
0.818 |
|
| 2012 |
McGinnis JL, Dunkle JA, Cate JHD, Weeks KM. Correction to The Mechanisms of RNA SHAPE Chemistry Journal of the American Chemical Society. 134: 12319-12319. DOI: 10.1021/Ja306198S |
0.888 |
|
| 2012 |
Tyrrell J, Weeks KM, Pielak GJ. RNA Biophysics in Living Cells using Shape Chemistry Biophysical Journal. 102: 279a. DOI: 10.1016/J.Bpj.2011.11.1543 |
0.719 |
|
| 2011 |
Weeks KM, Berkhout B, Bess JW, Datta SA, Gherge C, Gorelick RJ, Knoepfel SA, Leonard CW, Lombo T, Low JT, Rein A, Brake Ot, Watts JM. Applications of RNA structure analysis to retroviral packaging and anti-retroviral therapeutic discovery Retrovirology. 8: 1-1. PMID 22151835 DOI: 10.1186/1742-4690-8-S2-O1 |
0.887 |
|
| 2011 |
Grohman JK, Kottegoda S, Gorelick RJ, Allbritton NL, Weeks KM. Femtomole SHAPE reveals regulatory structures in the authentic XMRV RNA genome. Journal of the American Chemical Society. 133: 20326-34. PMID 22126209 DOI: 10.1021/Ja2070945 |
0.893 |
|
| 2011 |
Steen KA, Siegfried NA, Weeks KM. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA. Nature Protocols. 6: 1683-94. PMID 21979276 DOI: 10.1038/Nprot.2011.373 |
0.74 |
|
| 2011 |
Weeks KM. RNA structure probing dash seq. Proceedings of the National Academy of Sciences of the United States of America. 108: 10933-4. PMID 21700884 DOI: 10.1073/Pnas.1107835108 |
0.761 |
|
| 2011 |
Weeks KM, Mauger DM. Exploring RNA structural codes with SHAPE chemistry. Accounts of Chemical Research. 44: 1280-91. PMID 21615079 DOI: 10.1021/Ar200051H |
0.778 |
|
| 2011 |
Rocca-Serra P, Bellaousov S, Birmingham A, Chen C, Cordero P, Das R, Davis-Neulander L, Duncan CD, Halvorsen M, Knight R, Leontis NB, Mathews DH, Ritz J, Stombaugh J, Weeks KM, et al. Sharing and archiving nucleic acid structure mapping data. Rna (New York, N.Y.). 17: 1204-12. PMID 21610212 DOI: 10.1261/Rna.2753211 |
0.734 |
|
| 2010 |
Mauger DM, Weeks KM. Toward global RNA structure analysis. Nature Biotechnology. 28: 1178-9. PMID 21057487 DOI: 10.1038/Nbt1110-1178 |
0.77 |
|
| 2010 |
Gherghe C, Lombo T, Leonard CW, Datta SA, Bess JW, Gorelick RJ, Rein A, Weeks KM. Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome. Proceedings of the National Academy of Sciences of the United States of America. 107: 19248-53. PMID 20974908 DOI: 10.1073/Pnas.1006897107 |
0.9 |
|
| 2010 |
Simon-Loriere E, Martin DP, Weeks KM, Negroni M. RNA structures facilitate recombination-mediated gene swapping in HIV-1. Journal of Virology. 84: 12675-82. PMID 20881047 DOI: 10.1128/Jvi.01302-10 |
0.557 |
|
| 2010 |
Steen KA, Malhotra A, Weeks KM. Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease. Journal of the American Chemical Society. 132: 9940-3. PMID 20597503 DOI: 10.1021/Ja103781U |
0.737 |
|
| 2010 |
Low JT, Weeks KM. SHAPE-directed RNA secondary structure prediction. Methods (San Diego, Calif.). 52: 150-8. PMID 20554050 DOI: 10.1016/J.Ymeth.2010.06.007 |
0.879 |
|
| 2010 |
Lavender CA, Ding F, Dokholyan NV, Weeks KM. Robust and generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain. Biochemistry. 49: 4931-3. PMID 20545364 DOI: 10.1021/Bi100142Y |
0.697 |
|
| 2010 |
Duncan CD, Weeks KM. Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding. Biochemistry. 49: 5418-25. PMID 20533823 DOI: 10.1021/Bi100267G |
0.894 |
|
| 2010 |
Hajdin CE, Ding F, Dokholyan NV, Weeks KM. On the significance of an RNA tertiary structure prediction. Rna (New York, N.Y.). 16: 1340-9. PMID 20498460 DOI: 10.1261/Rna.1837410 |
0.892 |
|
| 2010 |
Weeks KM. Advances in RNA structure analysis by chemical probing. Current Opinion in Structural Biology. 20: 295-304. PMID 20447823 DOI: 10.1016/J.Sbi.2010.04.001 |
0.741 |
|
| 2010 |
Duncan CD, Weeks KM. The Mrs1 splicing factor binds the bI3 group I intron at each of two tetraloop-receptor motifs. Plos One. 5: e8983. PMID 20126554 DOI: 10.1371/Journal.Pone.0008983 |
0.879 |
|
| 2010 |
Gherghe C, Leonard CW, Gorelick RJ, Weeks KM. Secondary structure of the mature ex virio Moloney murine leukemia virus genomic RNA dimerization domain. Journal of Virology. 84: 898-906. PMID 19889760 DOI: 10.1128/Jvi.01602-09 |
0.897 |
|
| 2010 |
Lavender CA, Ding F, Dokholyan NV, Weeks KM. Correction to Robust and Generic RNA Modeling Using Inferred Constraints: A Structure for the Hepatitis C Virus IRES Pseudoknot Domain Biochemistry. 49: 5968-5968. DOI: 10.1021/Bi100935C |
0.556 |
|
| 2009 |
McGinnis JL, Duncan CD, Weeks KM. High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly. Methods in Enzymology. 468: 67-89. PMID 20946765 DOI: 10.1016/S0076-6879(09)68004-6 |
0.906 |
|
| 2009 |
Mortimer SA, Weeks KM. Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution. Nature Protocols. 4: 1413-21. PMID 19745823 DOI: 10.1038/Nprot.2009.126 |
0.729 |
|
| 2009 |
Mortimer SA, Weeks KM. C2'-endo nucleotides as molecular timers suggested by the folding of an RNA domain. Proceedings of the National Academy of Sciences of the United States of America. 106: 15622-7. PMID 19717440 DOI: 10.1073/Pnas.0901319106 |
0.703 |
|
| 2009 |
Watts JM, Dang KK, Gorelick RJ, Leonard CW, Bess JW, Swanstrom R, Burch CL, Weeks KM. Architecture and secondary structure of an entire HIV-1 RNA genome. Nature. 460: 711-6. PMID 19661910 DOI: 10.1038/Nature08237 |
0.705 |
|
| 2009 |
Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM. Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA. Rna (New York, N.Y.). 15: 1314-21. PMID 19458034 DOI: 10.1261/Rna.1536209 |
0.744 |
|
| 2009 |
Mortimer SA, Johnson JS, Weeks KM. Quantitative analysis of RNA solvent accessibility by N-silylation of guanosine. Biochemistry. 48: 2109-14. PMID 19226117 DOI: 10.1021/Bi801939G |
0.66 |
|
| 2009 |
Gherghe CM, Leonard CW, Ding F, Dokholyan NV, Weeks KM. Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics. Journal of the American Chemical Society. 131: 2541-6. PMID 19193004 DOI: 10.1021/Ja805460E |
0.892 |
|
| 2009 |
Deigan KE, Li TW, Mathews DH, Weeks KM. Accurate SHAPE-directed RNA structure determination. Proceedings of the National Academy of Sciences of the United States of America. 106: 97-102. PMID 19109441 DOI: 10.1073/Pnas.0806929106 |
0.706 |
|
| 2008 |
Mortimer SA, Weeks KM. Time-resolved RNA SHAPE chemistry. Journal of the American Chemical Society. 130: 16178-80. PMID 18998638 DOI: 10.1021/Ja8061216 |
0.755 |
|
| 2008 |
Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC. ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. Rna (New York, N.Y.). 14: 1979-90. PMID 18772246 DOI: 10.1261/Rna.1166808 |
0.584 |
|
| 2008 |
Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM. Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. Journal of the American Chemical Society. 130: 12244-5. PMID 18710236 DOI: 10.1021/Ja804541S |
0.891 |
|
| 2008 |
Duncan CD, Weeks KM. SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group I intron RNA. Biochemistry. 47: 8504-13. PMID 18642882 DOI: 10.1021/Bi800207B |
0.891 |
|
| 2008 |
Maity TS, Fried HM, Weeks KM. Anti-cooperative assembly of the SRP19 and SRP68/72 components of the signal recognition particle. The Biochemical Journal. 415: 429-37. PMID 18564060 DOI: 10.1042/Bj20080569 |
0.682 |
|
| 2008 |
Gherghe CM, Mortimer SA, Krahn JM, Thompson NL, Weeks KM. Slow conformational dynamics at C2'-endo nucleotides in RNA. Journal of the American Chemical Society. 130: 8884-5. PMID 18558680 DOI: 10.1021/Ja802691E |
0.889 |
|
| 2008 |
Wilkinson KA, Gorelick RJ, Vasa SM, Guex N, Rein A, Mathews DH, Giddings MC, Weeks KM. High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. Plos Biology. 6: e96. PMID 18447581 DOI: 10.1371/Journal.Pbio.0060096 |
0.66 |
|
| 2008 |
Jones CN, Wilkinson KA, Hung KT, Weeks KM, Spremulli LL. Lack of secondary structure characterizes the 5' ends of mammalian mitochondrial mRNAs. Rna (New York, N.Y.). 14: 862-71. PMID 18367717 DOI: 10.1261/Rna.909208 |
0.404 |
|
| 2008 |
Wang B, Wilkinson KA, Weeks KM. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry. Biochemistry. 47: 3454-61. PMID 18290632 DOI: 10.1021/Bi702372X |
0.706 |
|
| 2007 |
Maity TS, Weeks KM. A threefold RNA-protein interface in the signal recognition particle gates native complex assembly. Journal of Molecular Biology. 369: 512-24. PMID 17434535 DOI: 10.1016/J.Jmb.2007.03.032 |
0.717 |
|
| 2007 |
Mortimer SA, Weeks KM. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. Journal of the American Chemical Society. 129: 4144-5. PMID 17367143 DOI: 10.1021/Ja0704028 |
0.67 |
|
| 2006 |
Wilkinson KA, Merino EJ, Weeks KM. Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nature Protocols. 1: 1610-6. PMID 17406453 DOI: 10.1038/Nprot.2006.249 |
0.875 |
|
| 2006 |
Maity TS, Leonard CW, Rose MA, Fried HM, Weeks KM. Compartmentalization directs assembly of the signal recognition particle. Biochemistry. 45: 14955-64. PMID 17154533 DOI: 10.1021/Bi060890G |
0.736 |
|
| 2006 |
Badorrek CS, Weeks KM. Architecture of a gamma retroviral genomic RNA dimer. Biochemistry. 45: 12664-72. PMID 17042483 DOI: 10.1021/Bi060521K |
0.865 |
|
| 2006 |
Gherghe C, Weeks KM. The SL1-SL2 (stem-loop) domain is the primary determinant for stability of the gamma retroviral genomic RNA dimer. The Journal of Biological Chemistry. 281: 37952-61. PMID 16984912 DOI: 10.1074/Jbc.M607380200 |
0.866 |
|
| 2006 |
Badorrek CS, Gherghe CM, Weeks KM. Structure of an RNA switch that enforces stringent retroviral genomic RNA dimerization. Proceedings of the National Academy of Sciences of the United States of America. 103: 13640-5. PMID 16945907 DOI: 10.1073/Pnas.0606156103 |
0.883 |
|
| 2006 |
Bokinsky G, Nivón LG, Liu S, Chai G, Hong M, Weeks KM, Zhuang X. Two distinct binding modes of a protein cofactor with its target RNA. Journal of Molecular Biology. 361: 771-84. PMID 16872630 DOI: 10.1016/J.Jmb.2006.06.048 |
0.726 |
|
| 2006 |
Li TW, Weeks KM. Structure-independent and quantitative ligation of single-stranded DNA. Analytical Biochemistry. 349: 242-6. PMID 16325753 DOI: 10.1016/J.Ab.2005.11.002 |
0.402 |
|
| 2005 |
Badorrek CS, Weeks KM. RNA flexibility in the dimerization domain of a gamma retrovirus. Nature Chemical Biology. 1: 104-11. PMID 16408007 DOI: 10.1038/Nchembio712 |
0.894 |
|
| 2005 |
Gherghe CM, Krahn JM, Weeks KM. Crystal structures, reactivity and inferred acylation transition states for 2'-amine substituted RNA. Journal of the American Chemical Society. 127: 13622-8. PMID 16190727 DOI: 10.1021/Ja053647Y |
0.842 |
|
| 2005 |
Merino EJ, Weeks KM. Facile conversion of aptamers into sensors using a 2'-ribose-linked fluorophore. Journal of the American Chemical Society. 127: 12766-7. PMID 16159247 DOI: 10.1021/Ja053189T |
0.7 |
|
| 2005 |
Longo A, Leonard CW, Bassi GS, Berndt D, Krahn JM, Hall TM, Weeks KM. Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase. Nature Structural & Molecular Biology. 12: 779-87. PMID 16116439 DOI: 10.1038/Nsmb976 |
0.633 |
|
| 2005 |
Wilkinson KA, Merino EJ, Weeks KM. RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. Journal of the American Chemical Society. 127: 4659-67. PMID 15796531 DOI: 10.1021/Ja0436749 |
0.873 |
|
| 2005 |
Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM. RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). Journal of the American Chemical Society. 127: 4223-31. PMID 15783204 DOI: 10.1021/Ja043822V |
0.868 |
|
| 2004 |
Buchmueller KL, Weeks KM. Tris-borate is a poor counterion for RNA: a cautionary tale for RNA folding studies. Nucleic Acids Research. 32: e184. PMID 15601995 DOI: 10.1093/Nar/Gnh182 |
0.907 |
|
| 2004 |
Garcia I, Weeks KM. Structural basis for the self-chaperoning function of an RNA collapsed state. Biochemistry. 43: 15179-86. PMID 15568809 DOI: 10.1021/Bi048626F |
0.827 |
|
| 2004 |
John DM, Merino EJ, Weeks KM. Mechanics of DNA flexibility visualized by selective 2'-amine acylation at nucleotide bulges. Journal of Molecular Biology. 337: 611-9. PMID 15019781 DOI: 10.1016/J.Jmb.2004.01.029 |
0.726 |
|
| 2003 |
Buchmueller KL, Weeks KM. Near native structure in an RNA collapsed state. Biochemistry. 42: 13869-78. PMID 14636054 DOI: 10.1021/Bi035476K |
0.891 |
|
| 2003 |
Merino EJ, Weeks KM. Fluorogenic resolution of ligand binding by a nucleic acid aptamer. Journal of the American Chemical Society. 125: 12370-1. PMID 14531655 DOI: 10.1021/Ja035299A |
0.686 |
|
| 2003 |
Buchmueller KL, Hill BT, Platz MS, Weeks KM. RNA-tethered phenyl azide photocrosslinking via a short-lived indiscriminant electrophile. Journal of the American Chemical Society. 125: 10850-61. PMID 12952464 DOI: 10.1021/Ja035743+ |
0.888 |
|
| 2003 |
Bassi GS, Weeks KM. Kinetic and thermodynamic framework for assembly of the six-component bI3 group I intron ribonucleoprotein catalyst. Biochemistry. 42: 9980-8. PMID 12924947 DOI: 10.1021/Bi0346906 |
0.562 |
|
| 2003 |
Garcia I, Weeks KM. Small structural costs for evolution from RNA to RNP-based catalysis. Journal of Molecular Biology. 331: 57-73. PMID 12875836 DOI: 10.1016/S0022-2836(03)00686-7 |
0.823 |
|
| 2003 |
Chamberlin SI, Weeks KM. Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA. Biochemistry. 42: 901-9. PMID 12549908 DOI: 10.1021/Bi026817H |
0.889 |
|
| 2002 |
Chamberlin SI, Merino EJ, Weeks KM. Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups. Proceedings of the National Academy of Sciences of the United States of America. 99: 14688-93. PMID 12403820 DOI: 10.1073/Pnas.212527799 |
0.845 |
|
| 2002 |
John DM, Weeks KM. Chemical interrogation of mismatches in DNA-DNA and DNA-RNA duplexes under nonstringent conditions by selective 2'-amine acylation. Biochemistry. 41: 6866-74. PMID 12022892 DOI: 10.1021/Bi025611D |
0.526 |
|
| 2002 |
Bassi GS, de Oliveira DM, White MF, Weeks KM. Recruitment of intron-encoded and co-opted proteins in splicing of the bI3 group I intron RNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 128-33. PMID 11773622 DOI: 10.1073/Pnas.012579299 |
0.681 |
|
| 2001 |
Webb AE, Rose MA, Westhof E, Weeks KM. Protein-dependent transition states for ribonucleoprotein assembly. Journal of Molecular Biology. 309: 1087-100. PMID 11399081 DOI: 10.1006/Jmbi.2001.4714 |
0.82 |
|
| 2001 |
Rose MA, Weeks KM. Visualizing induced fit in early assembly of the human signal recognition particle. Nature Structural Biology. 8: 515-20. PMID 11373619 DOI: 10.1038/88577 |
0.802 |
|
| 2001 |
Webb AE, Weeks KM. A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex. Nature Structural Biology. 8: 135-40. PMID 11175902 DOI: 10.1038/84124 |
0.694 |
|
| 2000 |
John DM, Weeks KM. Tagging DNA mismatches by selective 2'-amine acylation. Chemistry & Biology. 7: 405-10. PMID 10873837 DOI: 10.1016/S1074-5521(00)00121-6 |
0.346 |
|
| 2000 |
Buchmueller KL, Webb AE, Richardson DA, Weeks KM. A collapsed non-native RNA folding state. Nature Structural Biology. 7: 362-6. PMID 10802730 DOI: 10.1038/75125 |
0.891 |
|
| 2000 |
Chamberlin SI, Weeks KM. Mapping local nucleotide flexibility by selective acylation of 2'-amine substituted RNA Journal of the American Chemical Society. 122: 216-224. DOI: 10.1021/Ja9914137 |
0.87 |
|
| 1997 |
Weeks KM. Protein-facilitated RNA folding. Current Opinion in Structural Biology. 7: 336-42. PMID 9204274 DOI: 10.1016/S0959-440X(97)80048-6 |
0.678 |
|
| 1996 |
Weeks KM, Cech TR. Assembly of a ribonucleoprotein catalyst by tertiary structure capture. Science (New York, N.Y.). 271: 345-8. PMID 8553068 DOI: 10.1126/Science.271.5247.345 |
0.813 |
|
| 1995 |
Weeks KM, Cech TR. Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5' splice site domain. Cell. 82: 221-30. PMID 7628013 DOI: 10.1016/0092-8674(95)90309-7 |
0.741 |
|
| 1995 |
Weeks KM, Cech TR. Efficient protein-facilitated splicing of the yeast mitochondrial bI5 intron. Biochemistry. 34: 7728-38. PMID 7540041 DOI: 10.1021/Bi00023A020 |
0.585 |
|
| 1993 |
Weeks KM, Crothers DM. Major groove accessibility of RNA. Science (New York, N.Y.). 261: 1574-7. PMID 7690496 DOI: 10.1126/Science.7690496 |
0.764 |
|
| 1993 |
Weeks KM, Crothers DM. RNA targeting by the HIV-1 Tat protein Perspectives in Drug Discovery and Design. 1: 225-234. DOI: 10.1007/Bf02171664 |
0.77 |
|
| 1992 |
Weeks KM, Crothers DM. RNA binding assays for Tat-derived peptides: implications for specificity. Biochemistry. 31: 10281-7. PMID 1384694 DOI: 10.1021/Bi00157A015 |
0.721 |
|
| 1991 |
Weeks KM, Crothers DM. RNA recognition by Tat-derived peptides: interaction in the major groove? Cell. 66: 577-88. PMID 1907891 DOI: 10.1016/0092-8674(81)90020-9 |
0.753 |
|
| 1990 |
Weeks KM, Ampe C, Schultz SC, Steitz TA, Crothers DM. Fragments of the HIV-1 Tat protein specifically bind TAR RNA. Science (New York, N.Y.). 249: 1281-5. PMID 2205002 DOI: 10.1126/Science.2205002 |
0.784 |
|
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