| Year |
Citation |
Score |
| 2020 |
Preto AJ, Barreto CAV, Baptista S, Almeida J, Lemos A, Melo A, Cordeiro MNDS, Kurkcuoglu Z, Melo R, Moreira IS. Understanding the binding specificity of G-protein coupled receptors towards G-proteins and Arrestins: application to the dopamine receptor family. Journal of Chemical Information and Modeling. PMID 32692555 DOI: 10.1021/Acs.Jcim.0C00371 |
0.627 |
|
| 2019 |
Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue LC, Honorato RV, Moreira I, Kurkcuoglu Z, Vangone A, Bonvin AMJJ. An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. Proteins. PMID 31886559 DOI: 10.1002/Prot.25869 |
0.632 |
|
| 2019 |
Kurkcuoglu Z, Bonvin AMJJ. Pre- and post-docking sampling of conformational changes using ClustENM and HADDOCK for protein-protein and protein-DNA systems. Proteins. PMID 31441121 DOI: 10.1002/Prot.25802 |
0.4 |
|
| 2017 |
Kurkcuoglu Z, Koukos PI, Citro N, Trellet ME, Rodrigues JPGLM, Moreira IS, Roel-Touris J, Melquiond ASJ, Geng C, Schaarschmidt J, Xue LC, Vangone A, Bonvin AMJJ. Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. Journal of Computer-Aided Molecular Design. PMID 28831657 DOI: 10.1007/S10822-017-0049-Y |
0.676 |
|
| 2017 |
Can MT, Kurkcuoglu Z, Ezeroglu G, Uyar A, Kurkcuoglu O, Doruker P. Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states. Plos One. 12: e0176262. PMID 28437479 DOI: 10.1371/Journal.Pone.0176262 |
0.662 |
|
| 2016 |
van Zundert GC, Trellet M, Schaarschmidt J, Kurkcuoglu Z, David M, Verlato M, Rosato A, Bonvin AM. The DisVis and PowerFit web servers: Explorative and Integrative Modeling of Biomolecular Complexes. Journal of Molecular Biology. PMID 27939290 DOI: 10.1016/J.Jmb.2016.11.032 |
0.749 |
|
| 2016 |
Vangone A, Rodrigues JP, Xue LC, van Zundert GC, Geng C, Kurkcuoglu Z, Nellen M, Narasimhan S, Karaca E, van Dijk M, Melquiond AS, Visscher KM, Trellet M, Kastritis PL, Bonvin AM. Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI Round1. Proteins. PMID 27802573 DOI: 10.1002/Prot.25198 |
0.716 |
|
| 2016 |
Kurkcuoglu Z, Bahar I, Doruker P. ClustENM: ENM-based sampling of essential conformational space at full atomic resolution. Journal of Chemical Theory and Computation. PMID 27494296 DOI: 10.1021/Acs.Jctc.6B00319 |
0.716 |
|
| 2016 |
Kurkcuoglu Z, Doruker P. Correction: Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins. Plos One. 11: e0160130. PMID 27441374 DOI: 10.1371/journal.pone.0160130 |
0.632 |
|
| 2016 |
Kurkcuoglu Z, Doruker P. Ligand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible Proteins. Plos One. 11: e0158063. PMID 27348230 DOI: 10.1371/Journal.Pone.0158063 |
0.679 |
|
| 2016 |
Trellet M, Schaarschmidt J, Zundert G, Kurkcuoglu Z, Melquiond A, Bonvin A. Integrative modelling goes HPC/HTC F1000research. 5. DOI: 10.7490/F1000Research.1113051.1 |
0.702 |
|
| 2015 |
Kurkcuoglu Z, Findik D, Akten ED, Doruker P. How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics. Biophysical Journal. 109: 1169-78. PMID 26190635 DOI: 10.1016/J.Bpj.2015.06.031 |
0.663 |
|
| 2013 |
Kurkcuoglu Z, Doruker P. Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase Entropy. 15: 1085-1099. DOI: 10.3390/E15031085 |
0.626 |
|
| 2012 |
Kurkcuoglu Z, Bakan A, Kocaman D, Bahar I, Doruker P. Coupling between catalytic loop motions and enzyme global dynamics. Plos Computational Biology. 8: e1002705. PMID 23028297 DOI: 10.1371/Journal.Pcbi.1002705 |
0.701 |
|
| 2012 |
Alakent B, Kurkcuoglu Z, Doruker P. Functional Dynamics of Proteins Elucidated by Statistical Analysis of Simulation Data Current Physical Chemistry. 2: 443-451. DOI: 10.2174/1877946811202040443 |
0.618 |
|
| 2011 |
Kurkcuoglu Z, Ural G, Demet Akten E, Doruker P. Blind Dockings of Benzothiazoles to Multiple Receptor Conformations of Triosephosphate Isomerase from Trypanosoma cruzi and Human. Molecular Informatics. 30: 986-95. PMID 27468153 DOI: 10.1002/Minf.201100109 |
0.662 |
|
| 2009 |
Kurkcuoglu O, Kurkcuoglu Z, Doruker P, Jernigan RL. Collective dynamics of the ribosomal tunnel revealed by elastic network modeling. Proteins. 75: 837-45. PMID 19004020 DOI: 10.1002/Prot.22292 |
0.611 |
|
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