| Year |
Citation |
Score |
| 2024 |
Lin L, Deng J, Peng J, Cui J, Wang L, Zhang M, Gao J, Li F, Shi Y, Lv M. Structural insights into the recognition of the A/T-rich motif in target gene promoters by the LMX1a homeobox domain. The Febs Journal. PMID 38465368 DOI: 10.1111/febs.17118 |
0.342 |
|
| 2024 |
Yang K, Chen G, Yu F, Fang X, Zhang J, Zhang Z, Shi Y, Zhang L. Molecular mechanism of specific HLA-A mRNA recognition by the RNA-binding-protein hMEX3B to promote tumor immune escape. Communications Biology. 7: 158. PMID 38326406 DOI: 10.1038/s42003-024-05845-y |
0.346 |
|
| 2022 |
Li J, Zhong F, Li M, Liu Y, Wang L, Liu M, Li F, Zhang J, Wu J, Shi Y, Zhang Z, Tu X, Ruan K, Gao J. Two Binding Sites of SARS-CoV-2 Macrodomain 3 Probed by Oxaprozin and Meclomen. Journal of Medicinal Chemistry. PMID 36356292 DOI: 10.1021/acs.jmedchem.2c01168 |
0.436 |
|
| 2022 |
Shen S, Jian Y, Cai Z, Li F, Lv M, Liu Y, Wu J, Fu C, Shi Y. Structural insights reveal the specific recognition of meiRNA by the Mei2 protein. Journal of Molecular Cell Biology. PMID 35512546 DOI: 10.1093/jmcb/mjac029 |
0.333 |
|
| 2021 |
Zhang Y, Wang K, Yang K, Shi Y, Hong J. Insight into the interaction between the RNA helicase CGH-1 and EDC-3 and its implications. Scientific Reports. 11: 20359. PMID 34645931 DOI: 10.1038/s41598-021-99919-0 |
0.353 |
|
| 2021 |
Zhang Y, Lv M, Li F, Li M, Zhang J, Shi Y, Hong J. Structural and biochemical insights into the recognition of RNA helicase CGH-1 by CAR-1 in C. elegans. Biochemical and Biophysical Research Communications. 549: 135-142. PMID 33676181 DOI: 10.1016/j.bbrc.2021.02.119 |
0.378 |
|
| 2020 |
Lv M, Gao J, Li M, Ma R, Li F, Liu Y, Liu M, Zhang J, Yao X, Wu J, Shi Y, Tang Y, Pan Y, Zhang ZY, Ruan K. Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1. The Journal of Physical Chemistry Letters. PMID 32885980 DOI: 10.1021/Acs.Jpclett.0C02039 |
0.546 |
|
| 2020 |
Zhu L, Hu Q, Cheng L, Jiang Y, Lv M, Liu Y, Li F, Shi Y, Gong Q. Crystal structure of Arabidopsis terminal uridylyl transferase URT1. Biochemical and Biophysical Research Communications. PMID 32008746 DOI: 10.1016/J.Bbrc.2020.01.124 |
0.409 |
|
| 2020 |
Wu P, Liu X, Gong Q, Shi Y, Wu J. Application of NMR Spectroscopy to Determine Small RNA Structure. Methods in Molecular Biology (Clifton, N.J.). 2113: 341-353. PMID 32006324 DOI: 10.1007/978-1-0716-0278-2_22 |
0.337 |
|
| 2019 |
Liu Y, Xu L, Xie C, Hong J, Li F, Ruan K, Chen J, Wu J, Shi Y. Structural Insights into ceNAP1 Chaperoning Activity toward ceH2A-H2B. Structure (London, England : 1993). PMID 31653339 DOI: 10.1016/J.Str.2019.10.002 |
0.368 |
|
| 2019 |
Chen J, Wang Z, Guo X, Li F, Wei Q, Chen X, Gong D, Xu Y, Chen W, Liu Y, Kang J, Shi Y. TRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells. Nature Communications. 10: 4273. PMID 31537782 DOI: 10.1038/S41467-019-12126-4 |
0.355 |
|
| 2019 |
Yang Y, Xu Z, He C, Zhang B, Shi Y, Li F. Structural insights into the recognition of γ-globin gene promoter by BCL11A. Cell Research. PMID 31467406 DOI: 10.1038/S41422-019-0221-0 |
0.332 |
|
| 2019 |
Nshogoza G, Liu Y, Gao J, Liu M, Moududee SA, Ma R, Li F, Zhang J, Wu J, Shi Y, Ruan K. NMR Fragment-Based Screening against Tandem RNA Recognition Motifs of TDP-43. International Journal of Molecular Sciences. 20. PMID 31262091 DOI: 10.3390/Ijms20133230 |
0.447 |
|
| 2019 |
Liu X, Shen S, Wu P, Li F, Liu X, Wang C, Gong Q, Wu J, Yao X, Zhang H, Shi Y. Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function. Nucleic Acids Research. PMID 31251801 DOI: 10.1093/Nar/Gkz505 |
0.303 |
|
| 2019 |
Zhang J, Guo Q, Gao J, Xu C, Zhang B, Li M, She J, Shi Y, Zhang Z, Ruan K, Wu J. Structural insight into the unique dsDNA binding topology of the human ORC2 wing helix domain. The Febs Journal. PMID 30963726 DOI: 10.1111/Febs.14844 |
0.575 |
|
| 2019 |
Xie G, Vo TV, Thillainadesan G, Holla S, Zhang B, Jiang Y, Lv M, Xu Z, Wang C, Balachandran V, Shi Y, Li F, Grewal SIS. A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing. Nature Communications. 10: 251. PMID 30651569 DOI: 10.1038/S41467-018-08273-9 |
0.429 |
|
| 2019 |
Lv M, Yao Y, Li F, Xu L, Yang L, Gong Q, Xu YZ, Shi Y, Fan YJ, Tang Y. Structural insights reveal the specific recognition of roX RNA by the dsRNA-binding domains of the RNA helicase MLE and its indispensable role in dosage compensation in Drosophila. Nucleic Acids Research. PMID 30649456 DOI: 10.2210/Pdb5Ztm/Pdb |
0.482 |
|
| 2019 |
Bluhm A, Viceconte N, Li F, Rane G, Ritz S, Wang S, Levin M, Shi Y, Kappei D, Butter F. ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2. Nucleic Acids Research. PMID 30629181 DOI: 10.1093/Nar/Gky1289 |
0.396 |
|
| 2018 |
Cheng L, Li F, Jiang Y, Yu H, Xie C, Shi Y, Gong Q. Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor. Nucleic Acids Research. PMID 30407553 DOI: 10.1093/Nar/Gky1116 |
0.389 |
|
| 2018 |
Jiang Y, Yu H, Li F, Cheng L, Zhu L, Shi Y, Gong Q. Unveiling the structural features that determine the dual methyltransferase activities of Streptococcus pneumoniae RlmCD. Plos Pathogens. 14: e1007379. PMID 30388185 DOI: 10.2210/Pdb5Zth/Pdb |
0.372 |
|
| 2018 |
Xie C, He C, Jiang Y, Yu H, Cheng L, Nshogoza G, Ala MS, Tian C, Wu J, Shi Y, Li F. Structural insights into the recognition of phosphorylated Hop1 by Mek1. Acta Crystallographica. Section D, Structural Biology. 74: 1027-1038. PMID 30289413 DOI: 10.1107/S2059798318011993 |
0.352 |
|
| 2018 |
Moududee SA, Jiang Y, Gilbert N, Xie G, Xu Z, Wu J, Gong Q, Tang Y, Shi Y. Structural and functional characterization of hMEX-3C Ring finger domain as an E3 ubiquitin ligase. Protein Science : a Publication of the Protein Society. PMID 30095198 DOI: 10.1002/Pro.3473 |
0.423 |
|
| 2018 |
Yang SF, Sun AA, Shi Y, Li F, Pickett HA. Structural and functional characterization of the RBBP4-ZNF827 interaction and its role in NuRD recruitment to telomeres. The Biochemical Journal. PMID 30045876 DOI: 10.1042/Bcj20180310 |
0.488 |
|
| 2018 |
Xu D, Ma R, Zhang J, Liu Z, Wu B, Peng J, Zhai Y, Gong Q, Shi Y, Wu J, Wu Q, Zhang Z, Ruan K. Dynamic Nature of CTCF Tandem 11 Zinc Fingers in Multivalent Recognition of DNA as Revealed by NMR Spectroscopy. The Journal of Physical Chemistry Letters. PMID 29965776 DOI: 10.1021/Acs.Jpclett.8B01440 |
0.727 |
|
| 2017 |
Sun A, Li F, Liu Z, Jiang Y, Zhang J, Wu J, Shi Y. Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4. Protein & Cell. PMID 29134516 DOI: 10.1007/S13238-017-0483-6 |
0.404 |
|
| 2017 |
Xu L, Wang L, Peng J, Li F, Wu L, Zhang B, Lv M, Zhang J, Gong Q, Zhang R, Zuo X, Zhang Z, Wu J, Tang Y, Shi Y. Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions. Structure (London, England : 1993). PMID 29107486 DOI: 10.1016/J.Str.2017.09.013 |
0.752 |
|
| 2017 |
Bao X, Liu H, Liu X, Ruan K, Zhang Y, Zhang Z, Hu Q, Liu Y, Akram S, Zhang J, Gong Q, Wang W, Yuan X, Li J, Zhao L, ... ... Shi Y, et al. Mitosis-specific acetylation tunes Ran effector binding for chromosome segregation. Journal of Molecular Cell Biology. PMID 29040603 DOI: 10.1093/Jmcb/Mjx045 |
0.489 |
|
| 2017 |
Bao H, Wang N, Wang C, Jiang Y, Liu J, Xu L, Wu J, Shi Y. Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Research. PMID 29036323 DOI: 10.1093/Nar/Gkx872 |
0.401 |
|
| 2017 |
Jiang Y, Li F, Wu J, Shi Y, Gong Q. Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD. Plos One. 12: e0185226. PMID 28949991 DOI: 10.1371/Journal.Pone.0185226 |
0.429 |
|
| 2017 |
Wu P, Liu X, Yang L, Sun Y, Gong Q, Wu J, Shi Y. The important conformational plasticity of DsrA sRNA for adapting multiple target regulation. Nucleic Acids Research. 45: 9625-9639. PMID 28934467 DOI: 10.1093/Nar/Gkx570 |
0.355 |
|
| 2017 |
Yang L, Wang C, Li F, Zhang J, Nayab A, Wu J, Shi Y, Gong Q. The human RNA-binding protein and E3 ligase MEX-3C binds the MEX-3-recognition element (MRE) motif with high affinity. The Journal of Biological Chemistry. PMID 28808060 DOI: 10.1074/Jbc.M117.797746 |
0.431 |
|
| 2017 |
Wen B, Wang W, Zhang J, Gong Q, Shi Y, Wu J, Zhang Z. Structural and dynamic properties of the C-terminal region of the Escherichia coli RNA chaperone Hfq: integrative experimental and computational studies. Physical Chemistry Chemical Physics : Pccp. PMID 28752165 DOI: 10.1039/C7Cp01044C |
0.516 |
|
| 2017 |
Wu P, Wu J, Shi Y. Solution Structure of the first stem-loop of Escherichia coli DsrA RNA Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5Wq1/Pdb |
0.316 |
|
| 2016 |
Lv M, Wang C, Li F, Peng J, Wen B, Gong Q, Shi Y, Tang Y. Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy. Protein & Cell. PMID 27757847 DOI: 10.1007/S13238-016-0328-8 |
0.728 |
|
| 2016 |
Bao H, Li F, Wang C, Wang N, Jiang Y, Tang Y, Wu J, Shi Y. Structural Basis for the Specific Recognition of RhoA by the Dual GTPase-activating Protein ARAP3. The Journal of Biological Chemistry. PMID 27311713 DOI: 10.1074/Jbc.M116.736140 |
0.48 |
|
| 2015 |
Zhang W, Zeng F, Liu Y, Shao C, Li S, Lv H, Shi Y, Niu L, Teng M, Li X. Crystal Structure of Human SSRP1 Middle Domain Reveals a Role in DNA Binding. Scientific Reports. 5: 18688. PMID 26687053 DOI: 10.1038/Srep18688 |
0.497 |
|
| 2015 |
Wang C, Zhu Y, Bao H, Jiang Y, Xu C, Wu J, Shi Y. A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1. Nucleic Acids Research. PMID 26673708 DOI: 10.1093/Nar/Gkv1382 |
0.457 |
|
| 2015 |
He C, Huang X, Liu Y, Li F, Yang Y, Tao H, Han C, Zhao C, Xiao Y, Shi Y. Structural insights on mouse L-threonine dehydrogenase: A regulatory role of Arg180 in catalysis. Journal of Structural Biology. PMID 26492815 DOI: 10.1016/J.Jsb.2015.10.014 |
0.562 |
|
| 2015 |
Bao Y, Liu Z, Zhang J, Wu J, Shi Y. (1)H, (13)C and (15)N resonance assignments and secondary structure of the human PHF6-ePHD1 domain. Biomolecular Nmr Assignments. PMID 26286319 DOI: 10.1007/S12104-015-9627-X |
0.481 |
|
| 2015 |
Wang L, Wang W, Li F, Zhang J, Wu J, Gong Q, Shi Y. Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq. Nucleic Acids Research. 43: 2400-11. PMID 25670676 DOI: 10.1093/Nar/Gkv072 |
0.388 |
|
| 2015 |
Liu Z, Li F, Zhang B, Li S, Wu J, Shi Y. Structural basis of plant homeodomain finger 6 (PHF6) recognition by the retinoblastoma binding protein 4 (RBBP4) component of the nucleosome remodeling and deacetylase (NuRD) complex. The Journal of Biological Chemistry. 290: 6630-8. PMID 25601084 DOI: 10.1074/Jbc.M114.610196 |
0.467 |
|
| 2015 |
Wan C, Wu B, Song Z, Zhang J, Chu H, Wang A, Liu Q, Shi Y, Li G, Wang J. Insights into the molecular recognition of the granuphilin C2A domain with PI(4,5)P2. Chemistry and Physics of Lipids. 186: 61-7. PMID 25595293 DOI: 10.1016/J.Chemphyslip.2015.01.003 |
0.361 |
|
| 2014 |
Li F, Zhao D, Wu J, Shi Y. Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition. Cell Research. 24: 1490-2. PMID 25412658 DOI: 10.1038/Cr.2014.153 |
0.349 |
|
| 2014 |
Zou Y, Shao Z, Peng J, Li F, Gong D, Wang C, Zuo X, Zhang Z, Wu J, Shi Y, Gong Q. Crystal structure of triple-BRCT-domain of ECT2 and insights into the binding characteristics to CYK-4. Febs Letters. 588: 2911-20. PMID 25068414 DOI: 10.1016/J.Febslet.2014.07.019 |
0.76 |
|
| 2014 |
Liu X, Song Z, Huo Y, Zhang J, Zhu T, Wang J, Zhao X, Aikhionbare F, Zhang J, Duan H, Wu J, Dou Z, Shi Y, Yao X. Chromatin protein HP1 interacts with the mitotic regulator borealin protein and specifies the centromere localization of the chromosomal passenger complex. The Journal of Biological Chemistry. 289: 20638-49. PMID 24917673 DOI: 10.1074/Jbc.M114.572842 |
0.359 |
|
| 2014 |
Zhao D, Wang X, Peng J, Wang C, Li F, Sun Q, Zhang Y, Zhang J, Cai G, Zuo X, Wu J, Shi Y, Zhang Z, Gong Q. Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin. Journal of Structural Biology. 187: 194-205. PMID 24878663 DOI: 10.1016/J.Jsb.2014.05.009 |
0.776 |
|
| 2014 |
Wang C, Zhu Y, Caceres TB, Liu L, Peng J, Wang J, Chen J, Chen X, Zhang Z, Zuo X, Gong Q, Teng M, Hevel JM, Wu J, Shi Y. Structural determinants for the strict monomethylation activity by trypanosoma brucei protein arginine methyltransferase 7. Structure (London, England : 1993). 22: 756-68. PMID 24726341 DOI: 10.1016/J.Str.2014.03.003 |
0.73 |
|
| 2014 |
Wang J, Qin S, Li F, Li S, Zhang W, Peng J, Zhang Z, Gong Q, Wu J, Shi Y. Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding. Cell Research. 24: 890-3. PMID 24675531 DOI: 10.1038/Cr.2014.38 |
0.727 |
|
| 2014 |
Tang Y, Zhang J, Yu J, Xu L, Wu J, Zhou CZ, Shi Y. Structure-guided activity enhancement and catalytic mechanism of yeast grx8. Biochemistry. 53: 2185-96. PMID 24611845 DOI: 10.1021/Bi401293S |
0.408 |
|
| 2014 |
Liu Z, Li F, Ruan K, Zhang J, Mei Y, Wu J, Shi Y. Structural and functional insights into the human Börjeson-Forssman-Lehmann syndrome-associated protein PHF6. The Journal of Biological Chemistry. 289: 10069-83. PMID 24554700 DOI: 10.1074/Jbc.M113.535351 |
0.443 |
|
| 2014 |
Wang C, Zhu Y, Chen J, Li X, Peng J, Chen J, Zou Y, Zhang Z, Jin H, Yang P, Wu J, Niu L, Gong Q, Teng M, Shi Y. Crystal structure of arginine methyltransferase 6 from Trypanosoma brucei. Plos One. 9: e87267. PMID 24498306 DOI: 10.1371/Journal.Pone.0087267 |
0.746 |
|
| 2014 |
Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q. Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. Nucleic Acids Research. 42: 509-25. PMID 24081582 DOI: 10.1093/Nar/Gkt869 |
0.733 |
|
| 2014 |
Zhao D, Wang C, Zhang J, Wu J, Shi Y, Zhang Z, Gong Q. solution structure of tandem SH3 domain of Sorbin and SH3 domain-containing protein 1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mox/Pdb |
0.536 |
|
| 2013 |
He C, Pillai SS, Taglini F, Li F, Ruan K, Zhang J, Wu J, Shi Y, Bayne EH. Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification. Proceedings of the National Academy of Sciences of the United States of America. 110: E1879-88. PMID 23613586 DOI: 10.1073/Pnas.1212155110 |
0.464 |
|
| 2013 |
Wang W, Wang L, Wu J, Gong Q, Shi Y. Hfq-bridged ternary complex is important for translation activation of rpoS by DsrA. Nucleic Acids Research. 41: 5938-48. PMID 23605038 DOI: 10.1093/Nar/Gkt276 |
0.373 |
|
| 2013 |
Li S, Wandel MP, Li F, Liu Z, He C, Wu J, Shi Y, Randow F. Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy. Science Signaling. 6: ra9. PMID 23386746 DOI: 10.1126/Scisignal.2003730 |
0.333 |
|
| 2013 |
He C, Li F, Zhang J, Wu J, Shi Y. The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition. The Journal of Biological Chemistry. 288: 4692-703. PMID 23269674 DOI: 10.1074/Jbc.M112.426148 |
0.484 |
|
| 2013 |
Gong D, Yang F, Li F, Qian D, Wu M, Shao Z, Wu M, Wu J, Shi Y. Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region. The Biochemical Journal. 450: 85-94. PMID 23190262 DOI: 10.1042/Bj20121382 |
0.499 |
|
| 2013 |
Wen B, Shi Y, Zhang Z. Clustering multi-domain protein structures in the essential dynamics subspace Journal of Theoretical and Computational Chemistry. 12. DOI: 10.1142/S0219633613410083 |
0.514 |
|
| 2012 |
Xia P, Wang Z, Liu X, Wu B, Wang J, Ward T, Zhang L, Ding X, Gibbons G, Shi Y, Yao X. EB1 acetylation by P300/CBP-associated factor (PCAF) ensures accurate kinetochore-microtubule interactions in mitosis. Proceedings of the National Academy of Sciences of the United States of America. 109: 16564-9. PMID 23001180 DOI: 10.1073/Pnas.1202639109 |
0.331 |
|
| 2012 |
Song Z, Wu P, Ji P, Zhang J, Gong Q, Wu J, Shi Y. Solution structure of the second RRM domain of RBM5 and its unusual binding characters for different RNA targets. Biochemistry. 51: 6667-78. PMID 22839758 DOI: 10.1021/Bi300539T |
0.441 |
|
| 2012 |
Liu L, Qin S, Zhang J, Ji P, Shi Y, Wu J. Solution structure of an atypical PHD finger in BRPF2 and its interaction with DNA. Journal of Structural Biology. 180: 165-73. PMID 22820306 DOI: 10.1016/J.Jsb.2012.06.014 |
0.446 |
|
| 2012 |
Wu B, Wang F, Zhang J, Zhang Z, Qin L, Peng J, Li F, Liu J, Lu G, Gong Q, Yao X, Wu J, Shi Y. Identification and structural basis for a novel interaction between Vav2 and Arap3. Journal of Structural Biology. 180: 84-95. PMID 22750419 DOI: 10.1016/J.Jsb.2012.06.011 |
0.768 |
|
| 2012 |
Qiu Y, Liu L, Zhao C, Han C, Li F, Zhang J, Wang Y, Li G, Mei Y, Wu M, Wu J, Shi Y. Combinatorial readout of unmodified H3R2 and acetylated H3K14 by the tandem PHD finger of MOZ reveals a regulatory mechanism for HOXA9 transcription. Genes & Development. 26: 1376-91. PMID 22713874 DOI: 10.1101/Gad.188359.112 |
0.389 |
|
| 2012 |
Li X, Liu K, Li F, Wang J, Huang H, Wu J, Shi Y. Structure of C-terminal tandem BRCT repeats of Rtt107 protein reveals critical role in interaction with phosphorylated histone H2A during DNA damage repair. The Journal of Biological Chemistry. 287: 9137-46. PMID 22262834 DOI: 10.1074/Jbc.M111.311860 |
0.426 |
|
| 2012 |
Shao Z, Li F, Sy SM, Yan W, Zhang Z, Gong D, Wen B, Huen MS, Gong Q, Wu J, Shi Y. Specific recognition of phosphorylated tail of H2AX by the tandem BRCT domains of MCPH1 revealed by complex structure. Journal of Structural Biology. 177: 459-68. PMID 22154951 DOI: 10.1016/J.Jsb.2011.11.022 |
0.586 |
|
| 2012 |
Qiu Y, Zhang W, Zhao C, Wang Y, Wang W, Zhang J, Zhang Z, Li G, Shi Y, Tu X, Wu J. Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA. The Biochemical Journal. 442: 527-38. PMID 22150589 DOI: 10.1042/Bj20111885 |
0.572 |
|
| 2011 |
Yan W, Shao Z, Li F, Niu L, Shi Y, Teng M, Li X. Structural basis of γH2AX recognition by human PTIP BRCT5-BRCT6 domains in the DNA damage response pathway. Febs Letters. 585: 3874-9. PMID 22064073 DOI: 10.1016/J.Febslet.2011.10.045 |
0.493 |
|
| 2011 |
Wang W, Wang L, Zou Y, Zhang J, Gong Q, Wu J, Shi Y. Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes & Development. 25: 2106-17. PMID 21979921 DOI: 10.1101/Gad.16746011 |
0.452 |
|
| 2011 |
Qin S, Jin L, Zhang J, Liu L, Ji P, Wu M, Wu J, Shi Y. Recognition of unmodified histone H3 by the first PHD finger of bromodomain-PHD finger protein 2 provides insights into the regulation of histone acetyltransferases monocytic leukemic zinc-finger protein (MOZ) and MOZ-related factor (MORF). The Journal of Biological Chemistry. 286: 36944-55. PMID 21880731 DOI: 10.1074/Jbc.M111.244400 |
0.44 |
|
| 2011 |
Liu J, Zhang J, Gong Q, Xiong P, Huang H, Wu B, Lu G, Wu J, Shi Y. Solution structure of tandem SH2 domains from Spt6 protein and their binding to the phosphorylated RNA polymerase II C-terminal domain. The Journal of Biological Chemistry. 286: 29218-26. PMID 21676864 DOI: 10.1074/Jbc.M111.252130 |
0.504 |
|
| 2011 |
Hu H, Liu Y, Wang M, Fang J, Huang H, Yang N, Li Y, Wang J, Yao X, Shi Y, Li G, Xu RM. Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP. Genes & Development. 25: 901-6. PMID 21478274 DOI: 10.1101/Gad.2045111 |
0.414 |
|
| 2011 |
Ji P, Yang G, Zhang J, Wu J, Chen Z, Gong Q, Wu J, Shi Y. Solution structure of the second PDZ domain of Zonula Occludens 1. Proteins. 79: 1342-6. PMID 21387411 DOI: 10.1002/Prot.22955 |
0.42 |
|
| 2011 |
Wu F, Liu Y, Zhu Z, Huang H, Ding B, Wu J, Shi Y. The 1.9Å crystal structure of Prp20p from Saccharomyces cerevisiae and its binding properties to Gsp1p and histones. Journal of Structural Biology. 174: 213-22. PMID 21093592 DOI: 10.1016/J.Jsb.2010.11.016 |
0.486 |
|
| 2011 |
Liu J, Zhang J, Wu J, Shi Y. Solution structure of tandem SH2 domain from Spt6 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2L3T/Pdb |
0.423 |
|
| 2010 |
Liu Y, Huang H, Zhou BO, Wang SS, Hu Y, Li X, Liu J, Zang J, Niu L, Wu J, Zhou JQ, Teng M, Shi Y. Structural analysis of Rtt106p reveals a DNA binding role required for heterochromatin silencing. The Journal of Biological Chemistry. 285: 4251-62. PMID 20007951 DOI: 10.1074/Jbc.M109.055996 |
0.486 |
|
| 2010 |
Wang X, Zhang S, Zhang J, Huang X, Xu C, Wang W, Liu Z, Wu J, Shi Y. A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR. The Journal of Biological Chemistry. 285: 4951-63. PMID 20007319 DOI: 10.1074/Jbc.M109.087528 |
0.437 |
|
| 2009 |
Huang X, Beullens M, Zhang J, Zhou Y, Nicolaescu E, Lesage B, Hu Q, Wu J, Bollen M, Shi Y. Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21). The Journal of Biological Chemistry. 284: 25375-87. PMID 19592703 DOI: 10.1074/Jbc.M109.024828 |
0.49 |
|
| 2009 |
Hong J, Zhang J, Liu Z, Qin S, Wu J, Shi Y. Solution structure of S. cerevisiae PDCD5-like protein and its promoting role in H(2)O(2)-induced apoptosis in yeast. Biochemistry. 48: 6824-34. PMID 19469552 DOI: 10.1021/Bi900488N |
0.442 |
|
| 2009 |
Liu Z, Zhang J, Wang X, Ding Y, Wu J, Shi Y. Temperature-induced partially unfolded state of hUBF HMG Box-5: conformational and dynamic investigations of the Box-5 thermal intermediate ensemble. Proteins. 77: 432-47. PMID 19452555 DOI: 10.1002/Prot.22454 |
0.434 |
|
| 2009 |
Gong Q, Wu J, Liu Q, Shi Y, Cui D, Xu L, Zhang Y. Solution structure of N-terminal segment of hepatitis B virus surface antigen Pre-S1. Science in China. Series C, Life Sciences. 41: 530-41. PMID 18726236 DOI: 10.1007/Bf02882892 |
0.373 |
|
| 2009 |
Wang X, Wu J, Shi Y. Solution structure of the PPIL1 bound to a fragment of SKIP Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2K7N/Pdb |
0.347 |
|
| 2008 |
Yu M, Yang F, Chu W, Wang Y, Zhao H, Gao B, Zhao W, Sun J, Wu F, Zhang X, Shi Y, Wu Z. 3D local structure around Zn in Kti11p as a representative Zn-(Cys)4 motif as obtained by MXAN. Biochemical and Biophysical Research Communications. 374: 28-32. PMID 18606152 DOI: 10.1016/J.Bbrc.2008.06.116 |
0.429 |
|
| 2008 |
Liu Y, Wang X, Zhang J, Huang H, Ding B, Wu J, Shi Y. Structural basis and binding properties of the second bromodomain of Brd4 with acetylated histone tails. Biochemistry. 47: 6403-17. PMID 18500820 DOI: 10.1021/Bi8001659 |
0.44 |
|
| 2008 |
Liu J, Zhang J, Yang Y, Huang H, Shen W, Hu Q, Wang X, Wu J, Shi Y. Conformational change upon ligand binding and dynamics of the PDZ domain from leukemia-associated Rho guanine nucleotide exchange factor. Protein Science : a Publication of the Protein Society. 17: 1003-14. PMID 18411422 DOI: 10.1110/Ps.073416508 |
0.466 |
|
| 2008 |
Wu F, Zhang J, Sun J, Huang H, Ji P, Chu W, Yu M, Yang F, Wu Z, Wu J, Shi Y. Solution structure of human DESR1, a CSL zinc-binding protein. Proteins. 71: 514-8. PMID 18214955 DOI: 10.1002/Prot.21915 |
0.333 |
|
| 2008 |
Hong J, Zhang J, Liu Z, Shi Y, Wu J. Solution Structure of S. cerevisiae PDCD5-like Protein Ymr074cp Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15562 |
0.355 |
|
| 2008 |
Wu F, Wu J, Shi Y. Solution structure of human DESR1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15377 |
0.322 |
|
| 2007 |
Niu X, Chen Q, Zhang J, Shen W, Shi Y, Wu J. Interesting structural and dynamical behaviors exhibited by the AF-6 PDZ domain upon Bcr peptide binding. Biochemistry. 46: 15042-53. PMID 18052198 DOI: 10.1021/Bi701303P |
0.468 |
|
| 2007 |
Hu Q, Shen W, Huang H, Liu J, Zhang J, Huang X, Wu J, Shi Y. Insight into the binding properties of MEKK3 PB1 to MEK5 PB1 from its solution structure. Biochemistry. 46: 13478-89. PMID 17985933 DOI: 10.1021/Bi701341N |
0.433 |
|
| 2007 |
Shi Z, Tabassum S, Jiang W, Zhang J, Mathur S, Wu J, Shi Y. Identification of a potent inhibitor of human dual-specific phosphatase, VHR, from computer-aided and NMR-based screening to cellular effects. Chembiochem : a European Journal of Chemical Biology. 8: 2092-9. PMID 17933004 DOI: 10.1002/Cbic.200700397 |
0.384 |
|
| 2007 |
Wu J, Yang Y, Zhang J, Ji P, Du W, Jiang P, Xie D, Huang H, Wu M, Zhang G, Wu J, Shi Y. Domain-swapped dimerization of the second PDZ domain of ZO2 may provide a structural basis for the polymerization of claudins. The Journal of Biological Chemistry. 282: 35988-99. PMID 17897942 DOI: 10.1074/Jbc.M703826200 |
0.471 |
|
| 2007 |
Huang H, Zhang J, Shen W, Wang X, Wu J, Wu J, Shi Y. Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails. Bmc Structural Biology. 7: 57. PMID 17848202 DOI: 10.1186/1472-6807-7-57 |
0.464 |
|
| 2007 |
Shi Y, Wu J. Structural basis of protein-protein interaction studied by NMR. Journal of Structural and Functional Genomics. 8: 67-72. PMID 17763922 DOI: 10.1007/S10969-007-9021-8 |
0.384 |
|
| 2007 |
Jin X, Zhang J, Dai H, Sun H, Wang D, Wu J, Shi Y. Investigation of the four cooperative unfolding units existing in the MICAL-1 CH domain. Biophysical Chemistry. 129: 269-78. PMID 17662518 DOI: 10.1016/J.Bpc.2007.06.008 |
0.379 |
|
| 2007 |
Sun H, Liu J, Zhang J, Shen W, Huang H, Xu C, Dai H, Wu J, Shi Y. Solution structure of BRD7 bromodomain and its interaction with acetylated peptides from histone H3 and H4. Biochemical and Biophysical Research Communications. 358: 435-41. PMID 17498659 DOI: 10.1016/J.Bbrc.2007.04.139 |
0.39 |
|
| 2007 |
Chen Q, Niu X, Xu Y, Wu J, Shi Y. Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex. Protein Science : a Publication of the Protein Society. 16: 1053-62. PMID 17473018 DOI: 10.1110/Ps.062440607 |
0.466 |
|
| 2007 |
Zhang J, Li X, Yao B, Shen W, Sun H, Xu C, Wu J, Shi Y. Solution structure of the first SH3 domain of human vinexin and its interaction with vinculin peptides. Biochemical and Biophysical Research Communications. 357: 931-7. PMID 17467669 DOI: 10.1016/J.Bbrc.2007.04.029 |
0.438 |
|
| 2007 |
Shen W, Xu C, Huang W, Zhang J, Carlson JE, Tu X, Wu J, Shi Y. Solution structure of human Brg1 bromodomain and its specific binding to acetylated histone tails. Biochemistry. 46: 2100-10. PMID 17274598 DOI: 10.1021/Bi0611208 |
0.457 |
|
| 2007 |
Wang D, Zhang J, Jin X, Wu J, Shi Y. Investigation of the structural stability of hUBF HMG box 5 by native-state hydrogen exchange. Biochemistry. 46: 1293-302. PMID 17260958 DOI: 10.1021/Bi061682R |
0.372 |
|
| 2007 |
Yao B, Zhang J, Dai H, Sun J, Jiao Y, Tang Y, Wu J, Shi Y. Solution structure of the second SH3 domain of human CMS and a newly identified binding site at the C-terminus of c-Cbl. Biochimica Et Biophysica Acta. 1774: 35-43. PMID 17188587 DOI: 10.1016/J.Bbapap.2006.09.018 |
0.422 |
|
| 2006 |
Dai H, Huang W, Xu J, Yao B, Xiong S, Ding H, Tang Y, Liu H, Wu J, Shi Y. Binding model of human coactosin-like protein with filament actin revealed by mutagenesis. Biochimica Et Biophysica Acta. 1764: 1688-700. PMID 17070122 DOI: 10.1016/J.Bbapap.2006.06.017 |
0.42 |
|
| 2006 |
Sun H, Dai H, Zhang J, Jin X, Xiong S, Xu J, Wu J, Shi Y. Solution structure of calponin homology domain of Human MICAL-1. Journal of Biomolecular Nmr. 36: 295-300. PMID 17043746 DOI: 10.1007/S10858-006-9062-5 |
0.391 |
|
| 2006 |
Li X, Zhang J, Cao Z, Wu J, Shi Y. Solution structure of GOPC PDZ domain and its interaction with the C-terminal motif of neuroligin. Protein Science : a Publication of the Protein Society. 15: 2149-58. PMID 16882988 DOI: 10.1110/Ps.062087506 |
0.502 |
|
| 2006 |
Xu J, Zhang J, Wang L, Zhou J, Huang H, Wu J, Zhong Y, Shi Y. Solution structure of Urm1 and its implications for the origin of protein modifiers. Proceedings of the National Academy of Sciences of the United States of America. 103: 11625-30. PMID 16864801 DOI: 10.1073/Pnas.0604876103 |
0.412 |
|
| 2006 |
Zhou D, Sun J, Zhao W, Zhang X, Shi Y, Teng M, Niu L, Dong Y, Liu P. Expression, purification, crystallization and preliminary X-ray characterization of the GRP carbohydrate-recognition domain from Homo sapiens. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 474-6. PMID 16682780 DOI: 10.1107/S1744309106012875 |
0.395 |
|
| 2006 |
Xu C, Zhang J, Huang X, Sun J, Xu Y, Tang Y, Wu J, Shi Y, Huang Q, Zhang Q. Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIP. The Journal of Biological Chemistry. 281: 15900-8. PMID 16595688 DOI: 10.1074/Jbc.M511155200 |
0.445 |
|
| 2005 |
Ding H, Yang Y, Zhang J, Wu J, Liu H, Shi Y. Structural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data. Proteins. 61: 1050-8. PMID 16224784 DOI: 10.1002/Prot.20695 |
0.432 |
|
| 2005 |
Sun J, Zhang J, Wu F, Xu C, Li S, Zhao W, Wu Z, Wu J, Zhou CZ, Shi Y. Solution structure of Kti11p from Saccharomyces cerevisiae reveals a novel zinc-binding module. Biochemistry. 44: 8801-9. PMID 15952786 DOI: 10.1021/Bi0504714 |
0.482 |
|
| 2005 |
Fu C, Ahmed K, Ding H, Ding X, Lan J, Yang Z, Miao Y, Zhu Y, Shi Y, Zhu J, Huang H, Yao X. Stabilization of PML nuclear localization by conjugation and oligomerization of SUMO-3. Oncogene. 24: 5401-13. PMID 15940266 DOI: 10.1038/Sj.Onc.1208714 |
0.313 |
|
| 2005 |
Zhang X, Xu Y, Zhang J, Wu J, Shi Y. Structural and dynamic characterization of the acid-unfolded state of hUBF HMG box 1 provides clues for the early events in protein folding. Biochemistry. 44: 8117-25. PMID 15924431 DOI: 10.1021/Bi0501939 |
0.407 |
|
| 2005 |
Xu C, Zheng P, Shen S, Xu Y, Wei L, Gao H, Wang S, Zhu C, Tang Y, Wu J, Zhang Q, Shi Y. NMR structure and regulated expression in APL cell of human SH3BGRL3. Febs Letters. 579: 2788-94. PMID 15907482 DOI: 10.1016/J.Febslet.2005.04.011 |
0.404 |
|
| 2005 |
Ding H, Xu Y, Chen Q, Dai H, Tang Y, Wu J, Shi Y. Solution structure of human SUMO-3 C47S and its binding surface for Ubc9. Biochemistry. 44: 2790-9. PMID 15723523 DOI: 10.1021/Bi0477586 |
0.416 |
|
| 2005 |
Zhou H, Xu Y, Yang Y, Huang A, Wu J, Shi Y. Solution structure of AF-6 PDZ domain and its interaction with the C-terminal peptides from Neurexin and Bcr. The Journal of Biological Chemistry. 280: 13841-7. PMID 15684424 DOI: 10.1074/Jbc.M411065200 |
0.461 |
|
| 2005 |
Wang CG, Cai Z, Lu W, Wu J, Xu Y, Shi Y, Chi CW. A novel short-chain peptide BmKX from the Chinese scorpion Buthus martensi Karsch, sequencing, gene cloning and structure determination. Toxicon : Official Journal of the International Society On Toxinology. 45: 309-19. PMID 15683869 DOI: 10.1016/J.Toxicon.2004.11.014 |
0.332 |
|
| 2004 |
Lou Y, Xie W, Zhang DF, Yao JH, Luo ZF, Wang YZ, Shi YY, Yao XB. Nek2A specifies the centrosomal localization of Erk2. Biochemical and Biophysical Research Communications. 321: 495-501. PMID 15358203 DOI: 10.1016/J.Bbrc.2004.06.171 |
0.302 |
|
| 2004 |
Dai H, Wu J, Xu Y, Yajun T, Husheng D, Shi Y. 1H, 13C and 15N resonance assignments and the secondary structures of human coactosin like protein (hCLP) D123N. Journal of Biomolecular Nmr. 29: 455-6. PMID 15213466 DOI: 10.1023/B:Jnmr.0000032550.18424.Aa |
0.343 |
|
| 2004 |
Cai Z, Xu C, Xu Y, Lu W, Chi CW, Shi Y, Wu J. Solution structure of BmBKTx1, a new BKCa1 channel blocker from the Chinese scorpion Buthus martensi Karsch. Biochemistry. 43: 3764-71. PMID 15049683 DOI: 10.1021/Bi035412+ |
0.333 |
|
| 2003 |
Wang J, Zhang Z, Liu H, Shi Y. Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 061903. PMID 16241257 DOI: 10.1103/Physreve.67.061903 |
0.425 |
|
| 2003 |
Zhu J, Zhu Q, Shi Y, Liu H. How well can we predict native contacts in proteins based on decoy structures and their energies? Proteins. 52: 598-608. PMID 12910459 DOI: 10.1002/Prot.10444 |
0.357 |
|
| 2003 |
Gu W, Wang T, Zhu J, Shi Y, Liu H. Molecular dynamics simulation of the unfolding of the human prion protein domain under low pH and high temperature conditions. Biophysical Chemistry. 104: 79-94. PMID 12834829 DOI: 10.1016/S0301-4622(02)00340-X |
0.361 |
|
| 2003 |
Zhang Z, Shi Y, Liu H. Molecular dynamics simulations of peptides and proteins with amplified collective motions Biophysical Journal. 84: 3583-3593. PMID 12770868 DOI: 10.1016/S0006-3495(03)75090-5 |
0.438 |
|
| 2003 |
Yang W, Xu Y, Wu J, Zeng W, Shi Y. Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor. Biochemistry. 42: 1930-8. PMID 12590579 DOI: 10.1021/Bi026372X |
0.487 |
|
| 2003 |
He J, Zhang Z, Shi Y, Liu H. Efficiently explore the energy landscape of proteins in molecular dynamics simulations by amplifying collective motions Journal of Chemical Physics. 119: 4005-4017. DOI: 10.1063/1.1591717 |
0.411 |
|
| 2002 |
Yang W, Zeng W, Zhou D, Shi Y. Cloning, expression, secondary structure characterization of HMG box 1 of hUBF from E. coli and its binding to DNA. Biochimica Et Biophysica Acta. 1598: 147-55. PMID 12147355 DOI: 10.1016/S0167-4838(02)00367-9 |
0.458 |
|
| 2002 |
Xu Y, Yang W, Wu J, Shi Y. Solution structure of the first HMG box domain in human upstream binding factor. Biochemistry. 41: 5415-20. PMID 11969401 DOI: 10.1021/Bi015977A |
0.523 |
|
| 2002 |
Tu X, Wu J, Xu Y, Shi Y. 1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain. Journal of Biomolecular Nmr. 21: 187-8. PMID 11727987 DOI: 10.1023/A:1012434510376 |
0.426 |
|
| 2001 |
Zhu J, Fan H, Liu H, Shi Y. Structure-based ligand design for flexible proteins: Application of new F-DycoBlock Journal of Computer-Aided Molecular Design. 15: 979-996. PMID 11989626 DOI: 10.1023/A:1014817911249 |
0.347 |
|
| 2001 |
Zhu J, Yu H, Fan H, Liu H, Shi Y. Design of new selective inhibitors of cyclooxygenase-2 by dynamic assembly of molecular building blocks Journal of Computer-Aided Molecular Design. 15: 447-463. PMID 11394738 DOI: 10.1023/A:1011114307711 |
0.468 |
|
| 2001 |
Zhang Z, Zhu Y, Shi Y. Molecular dynamics simulations of urea and thermal-induced denaturation of S-peptide analogue Biophysical Chemistry. 89: 145-162. PMID 11254208 DOI: 10.1016/S0301-4622(00)00227-1 |
0.423 |
|
| 2001 |
Zeng W, Zhang X, Tu X, Guang S, Xiao Y, Shi Y. Expression and purification of the DNA-binding domain of the human transcription factor E2F1. Protein Expression and Purification. 21: 99-104. PMID 11162393 DOI: 10.1006/Prep.2000.1346 |
0.433 |
|
| 2000 |
Xu Y, Wu J, Pei J, Shi Y, Ji Y, Tong Q. Solution structure of BmP02, a new potassium channel blocker from the venom of the Chinese scorpion Buthus martensi Karsch. Biochemistry. 39: 13669-75. PMID 11076505 DOI: 10.1021/Bi000860S |
0.34 |
|
| 2000 |
Tu X, Xiao Y, Zeng W, Shi Y. Expression and purification of a recombinant DNA-binding domain of ADR6 protein from Escherichia coli and its secondary structure characterization. Biochimica Et Biophysica Acta. 1481: 167-74. PMID 10962104 DOI: 10.1016/S0167-4838(00)00095-9 |
0.426 |
|
| 1999 |
Liu H, Duan Z, Luo Q, Shi Y. Structure-based ligand design by dynamically assembling molecular building blocks at binding site. Proteins. 36: 462-470. PMID 10450088 DOI: 10.1002/(Sici)1097-0134(19990901)36:4<462::Aid-Prot10>3.0.Co;2-7 |
0.361 |
|
| 1998 |
Guang S, Wu J, Yu T, Xia Y, Shi Y. Solution structure of a fragment of the dimerization domain of DP-1 determined by 1H-nuclear magnetic resonance and distance geometry. Biochimica Et Biophysica Acta. 1429: 18-28. PMID 9920380 DOI: 10.1016/S0167-4838(98)00208-8 |
0.386 |
|
| 1998 |
Guang S, Wu J, Tao L, Xia Y, Shi Y. Solution structure of a fragment of the dimerization domain of E2F-1 determined by circular dichroism, 1H nuclear magnetic resonance and distance geometry. Biochimica Et Biophysica Acta. 1388: 111-22. PMID 9774713 DOI: 10.1016/S0167-4838(98)00171-X |
0.39 |
|
| 1998 |
Xia W, Liu Q, Wu J, Xia Y, Shi Y, Qu X. Secondary structure of an antibacterial peptide Abp3 studied by two-dimensional proton-NMR. Biochimica Et Biophysica Acta. 1384: 299-305. PMID 9659391 DOI: 10.1016/S0167-4838(98)00021-1 |
0.378 |
|
| Show low-probability matches. |