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John B. Hogenesch, PhD - Related publications

Affiliations: 
Pharmacology Cincinnati Children's Hospital and Medical Center, USA 
Area:
genomics, computational biology, drug discovery, circadian rhythms
Website:
hogeneschlab.org
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Ma D, Przybylski D, Abruzzi KC, Schlichting M, Li Q, Long X, Rosbash M. A transcriptomic taxonomy of circadian neurons around the clock. Elife. 10. PMID 33438579 DOI: 10.7554/eLife.63056   
2021 Annamneedi VP, Park JW, Lee GS, Kang TJ. Cell Autonomous Circadian Systems and Their Relation to Inflammation. Biomolecules & Therapeutics. 29: 31-40. PMID 33372167 DOI: 10.4062/biomolther.2020.215   
2021 Wang Z, Su G, Dai Z, Meng M, Zhang H, Fan F, Liu Z, Zhang L, Weygant N, He F, Fang N, Zhang L, Cheng Q. Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation. Cell Proliferation. e12988. PMID 33442944 DOI: 10.1111/cpr.12988   
2021 Dannerfjord AA, Brown LA, Foster RG, Peirson SN. Light Input to the Mammalian Circadian Clock. Methods in Molecular Biology (Clifton, N.J.). 2130: 233-247. PMID 33284449 DOI: 10.1007/978-1-0716-0381-9_18   
2021 Collins EJ, Cervantes-Silva MP, Timmons GA, O'Siorain JR, Curtis AM, Hurley JM. Post-transcriptional circadian regulation in macrophages organizes temporally distinct immunometabolic states. Genome Research. PMID 33436377 DOI: 10.1101/gr.263814.120   
2021 Putker M, Wong DCS, Seinkmane E, Rzechorzek NM, Zeng A, Hoyle NP, Chesham JE, Edwards MD, Feeney KA, Fischer R, Peschel N, Chen KF, Vanden Oever M, Edgar RS, Selby CP, et al. CRYPTOCHROMES confer robustness, not rhythmicity, to circadian timekeeping. The Embo Journal. e106745. PMID 33491228 DOI: 10.15252/embj.2020106745   
2021 Ch R, Rey G, Ray S, Jha PK, Driscoll PC, Dos Santos MS, Malik DM, Lach R, Weljie AM, MacRae JI, Valekunja UK, Reddy AB. Rhythmic glucose metabolism regulates the redox circadian clockwork in human red blood cells. Nature Communications. 12: 377. PMID 33452240 DOI: 10.1038/s41467-020-20479-4   
2021 Weger BD, Gobet C, David FPA, Atger F, Martin E, Phillips NE, Charpagne A, Weger M, Naef F, Gachon F. Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33452134 DOI: 10.1073/pnas.2015803118   
2021 Chan F, Liu J. Molecular regulation of brain metabolism underlying circadian epilepsy. Epilepsia. PMID 33395505 DOI: 10.1111/epi.16796   
2021 Fang B, Guan D, Lazar MA. Using GRO-Seq to Measure Circadian Transcription and Discover Circadian Enhancers. Methods in Molecular Biology (Clifton, N.J.). 2130: 127-148. PMID 33284441 DOI: 10.1007/978-1-0716-0381-9_10   
2021 Fang B, Guan D, Lazar MA. Using GRO-Seq to Measure Circadian Transcription and Discover Circadian Enhancers. Methods in Molecular Biology (Clifton, N.J.). 2130: 127-148. PMID 33284441 DOI: 10.1007/978-1-0716-0381-9_10   
2021 Tinarelli F, Ivanova E, Colombi I, Barini E, Balzani E, Garcia CG, Gasparini L, Chiappalone M, Kelsey G, Tucci V. Cell-cell coupling and DNA methylation abnormal phenotypes in the after-hours mice. Epigenetics & Chromatin. 14: 1. PMID 33407878 DOI: 10.1186/s13072-020-00373-5   
2021 Ahn HR, Kim YJ, Lim YJ, Duan S, Eom SH, Jung KH. Key Genes in the Melatonin Biosynthesis Pathway with Circadian Rhythm Are Associated with Various Abiotic Stresses. Plants (Basel, Switzerland). 10. PMID 33435489 DOI: 10.3390/plants10010129   
2021 Sato T, Greco CM. Expanding the link between circadian rhythms and redox metabolism of epigenetic control. Free Radical Biology & Medicine. PMID 33450380 DOI: 10.1016/j.freeradbiomed.2021.01.009   
2021 Sancar A, Van Gelder RN. Clocks, cancer, and chronochemotherapy. Science (New York, N.Y.). 371. PMID 33384351 DOI: 10.1126/science.abb0738   
2021 Du NH, Brown SA. Measuring Circadian Rhythms in Human Cells. Methods in Molecular Biology (Clifton, N.J.). 2130: 53-67. PMID 33284435 DOI: 10.1007/978-1-0716-0381-9_4   
2021 Sládek M, Liška K, Houdek P, Sumová A. Modulation of single cell circadian response to NMDA by diacylglycerol lipase inhibition reveals a role of endocannabinoids in light entrainment of the suprachiasmatic nucleus. Neuropharmacology. 108455. PMID 33444638 DOI: 10.1016/j.neuropharm.2021.108455   
2021 Brown SA, Sinues P. Circadian Metabolomics from Breath. Methods in Molecular Biology (Clifton, N.J.). 2130: 149-156. PMID 33284442 DOI: 10.1007/978-1-0716-0381-9_11   
2021 Michel S, Nakamura TJ, Meijer JH, Colwell CS. Electrophysiological Approaches to Studying the Suprachiasmatic Nucleus. Methods in Molecular Biology (Clifton, N.J.). 2130: 303-324. PMID 33284454 DOI: 10.1007/978-1-0716-0381-9_23   
2021 Sengupta S, Ince L, Sartor F, Borrmann H, Zhuang X, Naik A, Curtis A, McKeating JA. Clocks, Viruses, and Immunity: Lessons for the COVID-19 Pandemic. Journal of Biological Rhythms. 748730420987669. PMID 33480287 DOI: 10.1177/0748730420987669   
2021 Jones JR, Tackenberg MC, McMahon DG. Optogenetic Methods for the Study of Circadian Rhythms. Methods in Molecular Biology (Clifton, N.J.). 2130: 325-336. PMID 33284455 DOI: 10.1007/978-1-0716-0381-9_24   
2021 Jha PK, Bouâouda H, Kalsbeek A, Challet E. Distinct feedback actions of behavioural arousal to the master circadian clock in nocturnal and diurnal mammals. Neuroscience and Biobehavioral Reviews. PMID 33440199 DOI: 10.1016/j.neubiorev.2020.12.011   
2021 Zhou L, Miller C, Miraglia LJ, Romero A, Mure LS, Panda S, Kay SA. A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33443164 DOI: 10.1073/pnas.2020454118   
2021 Evans JA, Welsh DK, Davidson AJ. Collection of Mouse Brain Slices for Bioluminescence Imaging of Circadian Clock Networks. Methods in Molecular Biology (Clifton, N.J.). 2130: 287-294. PMID 33284452 DOI: 10.1007/978-1-0716-0381-9_21   
2021 Wang M, Yu D, Zheng L, Hong B, Li H, Hu X, Zhang K, Mou Y. Mechanical Stress Affects Circadian Rhythm in Skeletal Muscle (C2C12 Myoblasts) by Reducing Per/Cry Gene Expression and Increasing Bmal1 Gene Expression. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 27: e928359. PMID 33444293 DOI: 10.12659/MSM.928359   
2021 Chen YL, Chuang JH, Wang HT, Chen HC, Liu WH, Yang MY. Altered Expression of Circadian Clock Genes in Patients with Atrial Fibrillation Is Associated with Atrial High-Rate Episodes and Left Atrial Remodeling. Diagnostics (Basel, Switzerland). 11. PMID 33430447 DOI: 10.3390/diagnostics11010090   
2021 Nam YH, Jeong SY, Kim YH, Rodriguez I, Nuankaew W, Bhawal UK, Hong BN, Kang TH. Anti-aging effects of Korean Red Ginseng (KRG) in differentiated embryo chondrocyte (DEC) knockout mice. Journal of Ginseng Research. 45: 183-190. PMID 33437170 DOI: 10.1016/j.jgr.2020.09.003   
2021 Droin C, Kholtei JE, Bahar Halpern K, Hurni C, Rozenberg M, Muvkadi S, Itzkovitz S, Naef F. Space-time logic of liver gene expression at sub-lobular scale. Nature Metabolism. PMID 33432202 DOI: 10.1038/s42255-020-00323-1   
2021 Soni SK, Basu P, Singaravel M, Sharma R, Pandi-Perumal SR, Cardinali DP, Reiter RJ. Sirtuins and the circadian clock interplay in cardioprotection: focus on sirtuin 1. Cellular and Molecular Life Sciences : Cmls. PMID 33388853 DOI: 10.1007/s00018-020-03713-6   
2021 Chen Z, Xiong ZF, Liu X. Research progress on the interaction between circadian clock and early vascular aging. Experimental Gerontology. 111241. PMID 33453324 DOI: 10.1016/j.exger.2021.111241   
2021 Barnadas Solé C, Zerón Rugerio MF, Foncillas Corvinos J, Díez-Noguera A, Cambras T, Izquierdo-Pulido M. Sleeve gastrectomy in patients with severe obesity restores circadian rhythms and their relationship with sleep pattern. Chronobiology International. 1-11. PMID 33435751 DOI: 10.1080/07420528.2020.1866003   
2021 Kim JH, Bell LJ, Wang X, Wimalasekera R, Bastos HP, Kelly KA, Hannah MA, Webb AAR. Arabidopsis sirtuins and poly(ADP-ribose) polymerases regulate gene expression in the day but do not affect circadian rhythms. Plant, Cell & Environment. PMID 33464569 DOI: 10.1111/pce.13996   
2021 Lee S, Nam HG, Kim Y. The core circadian component, Bmal1, is maintained in the pineal gland of old killifish brain. Iscience. 24: 101905. PMID 33385110 DOI: 10.1016/j.isci.2020.101905   
2021 Douglas CM, Hesketh SJ, Esser KA. Time of Day and Muscle Strength: A Circadian Output? Physiology (Bethesda, Md.). 36: 44-51. PMID 33325817 DOI: 10.1152/physiol.00030.2020   
2021 Bartman CM, Matveyenko A, Pabelick CM, Prakash YS. Cellular Clocks in Hyperoxia Effects on [Ca] Regulation in Developing Human Airway Smooth Muscle. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 33404366 DOI: 10.1152/ajplung.00406.2020   
2021 Pett JP, Westermark PO, Herzel H. Simple Kinetic Models in Molecular Chronobiology. Methods in Molecular Biology (Clifton, N.J.). 2130: 87-100. PMID 33284438 DOI: 10.1007/978-1-0716-0381-9_7   
2021 Zhong J, Wang B, Wu B, Shang J, Jiang N, Cui A, Chen Y, Xu X, Lu H. Clock knockdown attenuated reactive oxygen species-mediated senescence of chondrocytes through restoring autophagic flux. Life Sciences. 119036. PMID 33450259 DOI: 10.1016/j.lfs.2021.119036   
2021 Ketchesin KD, Zong W, Hildebrand MA, Seney ML, Cahill KM, Scott MR, Shankar VG, Glausier JR, Lewis DA, Tseng GC, McClung CA. Diurnal rhythms across the human dorsal and ventral striatum. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33372142 DOI: 10.1073/pnas.2016150118   
2021 Steckler R, Tamir S, Gutman R. Mice held at an environmental photic cycle oscillating at their -like period length do not show the high-fat diet-induced obesity that develops under the 24-hour photic cycle. Chronobiology International. 1-15. PMID 33455455 DOI: 10.1080/07420528.2020.1869029   
2021 Vetter C, Winnebeck EC, Roenneberg T. Asking the Clock: How to Use Information from Questionnaires for Circadian Phenotyping. Methods in Molecular Biology (Clifton, N.J.). 2130: 79-85. PMID 33284437 DOI: 10.1007/978-1-0716-0381-9_6   
2021 Li C, Zhang L, Ma T, Gao L, Yang L, Wu M, Pang Z, Wang X, Yao Q, Xiao Y, Zhao L, Liu W, Zhao H, Wang C, Wang A, et al. Bisphenol A attenuates testosterone production in Leydig cells via the inhibition of NR1D1 signaling. Chemosphere. 263: 128020. PMID 33297044 DOI: 10.1016/j.chemosphere.2020.128020   
2021 Cao X, Yang Y, Selby CP, Liu Z, Sancar A. Molecular mechanism of the repressive phase of the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33443219 DOI: 10.1073/pnas.2021174118   
2021 Zhang S, Liu H, Yuan L, Li X, Wang L, Xu X, Xie Q. Recognition of CCA1 alternative protein isoforms during temperature acclimation. Plant Cell Reports. PMID 33398474 DOI: 10.1007/s00299-020-02644-7   
2021 Sun Q, Zeng C, Du L, Dong C. Mechanism of circadian regulation of the NRF2/ARE pathway in renal ischemia-reperfusion. Experimental and Therapeutic Medicine. 21: 190. PMID 33488799 DOI: 10.3892/etm.2021.9622   
2021 Zhao H, Xu D, Tian T, Kong F, Lin K, Gan S, Zhang H, Li G. Molecular and functional dissection of EARLY-FLOWERING 3 (ELF3) and ELF4 in Arabidopsis. Plant Science : An International Journal of Experimental Plant Biology. 303: 110786. PMID 33487361 DOI: 10.1016/j.plantsci.2020.110786   
2021 Luo H, Cheng S, Jiang Z, Hou W, Wang Z. Economical bluetooth low energy-based telemetry system with combined data processing method for long-term laboratory animal monitoring for biological rhythm research. Chronobiology International. 1-15. PMID 33435737 DOI: 10.1080/07420528.2020.1868489   
2021 Mouland J, Walmsley L, Brown TM, Lucas RJ. Acute In Vivo Multielectrode Recordings from the Mouse Suprachiasmatic Nucleus. Methods in Molecular Biology (Clifton, N.J.). 2130: 249-262. PMID 33284450 DOI: 10.1007/978-1-0716-0381-9_19   
2021 Delorme TC, Srivastava LK, Cermakian N. Altered Circadian Rhythms in a Mouse Model of Neurodevelopmental Disorders Based on Prenatal Maternal Immune Activation. Brain, Behavior, and Immunity. PMID 33412254 DOI: 10.1016/j.bbi.2020.12.030   
2021 Douma LG, Barral D, Gumz ML. Interplay of the Circadian Clock and Endothelin System. Physiology (Bethesda, Md.). 36: 35-43. PMID 33325818 DOI: 10.1152/physiol.00021.2020   
2021 Figueiro MG, Goo YH, Hogan R, Plitnick B, Lee JK, Jahangir K, Moulik M, Yechoor VK, Paul A. Light-Dark Patterns Mirroring Shift Work Accelerate Atherosclerosis and Promote Vulnerable Lesion Phenotypes. Journal of the American Heart Association. e018151. PMID 33401929 DOI: 10.1161/JAHA.120.018151