Xulun Zhang, PhD - Related publications

University of Chicago, Chicago, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Su D, Yuan B, Su C, Zhang Y. A 54-kDa short variant of DHX33 functions in regulating mRNA translation. Journal of Cellular Physiology. PMID 30684270 DOI: 10.1002/jcp.28178   
2019 Lopes GS, Lico DTP, Silva-Rocha R, de Oliveira RR, Sebollela A, Paçó-Larson ML, Larson RE. A phylogenetically conserved hnRNP type A/B protein from squid brain. Neuroscience Letters. 696: 219-224. PMID 30610890 DOI: 10.1016/j.neulet.2019.01.002   
2019 Mitsuhashi H, Homma S, Beermann ML, Ishimaru S, Takeda H, Yu BK, Liu K, Duraiswamy S, Boyce FM, Miller JB. Efficient system for upstream mRNA trans-splicing to generate covalent, head-to-tail, protein multimers. Scientific Reports. 9: 2274. PMID 30783185 DOI: 10.1038/s41598-018-36684-7   
2019 Mitsuhashi H, Homma S, Beermann ML, Ishimaru S, Takeda H, Yu BK, Liu K, Duraiswamy S, Boyce FM, Miller JB. Efficient system for upstream mRNA trans-splicing to generate covalent, head-to-tail, protein multimers. Scientific Reports. 9: 2274. PMID 30783185 DOI: 10.1038/s41598-018-36684-7   
2019 Surkova S, Sokolkova A, Kozlov K, Nuzhdin SV, Samsonova M. Quantitative analysis reveals genotype- and domain- specific differences between mRNA and protein expression of segmentation genes in Drosophila. Developmental Biology. PMID 30629954 DOI: 10.1016/j.ydbio.2019.01.006   
2019 Hoernes TP, Heimdörfer D, Köstner D, Faserl K, Nußbaumer F, Plangger R, Kreutz C, Lindner H, Erlacher MD. Eukaryotic Translation Elongation is Modulated by Single Natural Nucleotide Derivatives in the Coding Sequences of mRNAs. Genes. 10. PMID 30691071 DOI: 10.3390/genes10020084   
2019 Valdivia AO, Farr V, Bhattacharya SK. A novel myelin basic protein transcript variant in the murine central nervous system. Molecular Biology Reports. PMID 30747386 DOI: 10.1007/s11033-019-04635-8   
2019 Xiong F, Ren JJ, Yu Q, Wang YY, Kong LJ, Otegui MS, Wang XL. AtBUD13 affects pre-mRNA splicing and is essential for embryo development in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 30720904 DOI: 10.1111/tpj.14268   
2019 Ma Q, Tatsuno T, Nakamura Y, Izumi SI, Tomosugi N, Ishigaki Y. Immuno-detection of mRNA-binding protein complex in human cells under transmission electron microscopy. Microscopy Research and Technique. PMID 30637830 DOI: 10.1002/jemt.23214   
2019 Delaidelli A, Jan A, Herms J, Sorensen PH. Translational control in brain pathologies: biological significance and therapeutic opportunities. Acta Neuropathologica. PMID 30739199 DOI: 10.1007/s00401-019-01971-8   
2019 Goyama S, Schibler J, Mulloy JC. Alternative translation initiation generates the N-terminal truncated form of RUNX1 that retains hematopoietic activity. Experimental Hematology. PMID 30690039 DOI: 10.1016/j.exphem.2019.01.008   
2019 Bo S, Li H, Zhang Q, Lu Z, Bao T, Zhao X. Potential relations between post-spliced introns and mature mRNAs in the Caenorhabditis elegans genome. Journal of Theoretical Biology. PMID 30710554 DOI: 10.1016/j.jtbi.2019.01.031   
2019 Cifuentes-Goches JC, Hernández-Ancheyta L, Guarneros G, Oviedo N, Hernández-Sánchez J. Domains two and three of Escherichia coli ribosomal S1 protein confers 30S subunits a high affinity for downstream A/U-rich mRNAs. Journal of Biochemistry. PMID 30668774 DOI: 10.1093/jb/mvz006   
2019 Ross JA, Thorsing M, Lillebæk EMS, Teixeira Dos Santos P, Kallipolitis BH. The LhrC sRNAs control expression of T cell-stimulating antigen TcsA in Listeria monocytogenes by decreasing tcsA mRNA stability. Rna Biology. 1-12. PMID 30706751 DOI: 10.1080/15476286.2019.1572423   
2019 Ehrmann I, Crichton JH, Gazzara MR, James K, Liu Y, Grellscheid SN, Curk T, de Rooij D, Steyn JS, Cockell S, Adams IR, Barash Y, Elliott DJ. An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning. Elife. 8. PMID 30674417 DOI: 10.7554/eLife.39304   
2019 Chassé H, Boulben S, Cormier P, Morales J. Translational Control of Canonical and Non-Canonical Translation Initiation Factors at the Sea Urchin Egg to Embryo Transition. International Journal of Molecular Sciences. 20. PMID 30717141 DOI: 10.3390/ijms20030626   
2019 Huertas R, Catalá R, Jimenez-Gomez J, Castellano MM, Crevillén P, Piñeiro M, Jarillo JA, Salinas J. Arabidopsis SME1 regulates plant development and response to abiotic stress by determining spliceosome activity specificity. The Plant Cell. PMID 30696706 DOI: 10.1105/tpc.18.00689   
2019 Parenteau J, Maignon L, Berthoumieux M, Catala M, Gagnon V, Abou Elela S. Introns are mediators of cell response to starvation. Nature. PMID 30651641 DOI: 10.1038/s41586-018-0859-7   
2019 Stewart M. Polyadenylation and nuclear export of mRNAs. The Journal of Biological Chemistry. PMID 30683695 DOI: 10.1074/jbc.REV118.005594   
2019 Costello A, Lao NT, Barron N, Clynes M. Improved yield of rhEPO in CHO cells with synthetic 5' UTR. Biotechnology Letters. 41: 231-239. PMID 30506229 DOI: 10.1007/s10529-018-2632-2   
2019 Pedersen S, Terkelsen TB, Eriksen M, Hauge MK, Lund CC, Sneppen K, Mitarai N. Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli. Journal of Molecular Biology. PMID 30690030 DOI: 10.1016/j.jmb.2019.01.026   
2019 Sapkota D, Lake AM, Yang W, Yang C, Wesseling H, Guise A, Uncu C, Dalal JS, Kraft AW, Lee JM, Sands MS, Steen JA, Dougherty JD. Cell-Type-Specific Profiling of Alternative Translation Identifies Regulated Protein Isoform Variation in the Mouse Brain. Cell Reports. 26: 594-607.e7. PMID 30650354 DOI: 10.1016/j.celrep.2018.12.077   
2019 Wan ZC, Li D, Li XJ, Zhu YT, Gao TH, Li WW, Wang Q. B52 promotes alternative splicing of Dscam in Chinese mitten crab, Eriocheir sinensis. Fish & Shellfish Immunology. PMID 30685464 DOI: 10.1016/j.fsi.2019.01.027   
2019 Sen R, Barman P, Kaja A, Ferdoush J, Lahudkar S, Roy A, Bhaumik SR. Distinct functions of the cap-binding complex in stimulation of nuclear mRNA export. Molecular and Cellular Biology. PMID 30745412 DOI: 10.1128/MCB.00540-18   
2019 Deforges J, Reis RS, Jacquet P, Sheppard S, Gadekar VP, Hart-Smith G, Tanzer A, Hofacker IL, Iseli C, Xenarios I, Poirier Y. Control of cognate sense mRNA translation by cis-natural antisense RNAs. Plant Physiology. PMID 30760640 DOI: 10.1104/pp.19.00043   
2019 Macnamara CK, Mitchell EI, Chaplain MAJ. Spatial-Stochastic Modelling of Synthetic Gene Regulatory Networks. Journal of Theoretical Biology. PMID 30753839 DOI: 10.1016/j.jtbi.2019.02.003   
2019 Godet AC, David F, Hantelys F, Tatin F, Lacazette E, Garmy-Susini B, Prats AC. IRES Trans-Acting Factors, Key Actors of the Stress Response. International Journal of Molecular Sciences. 20. PMID 30791615 DOI: 10.3390/ijms20040924   
2019 Hollerer I, Barker JC, Jorgensen V, Tresenrider A, Dugast-Darzacq C, Chan LY, Darzacq X, Tjian R, Ünal E, Brar GA. Evidence for an Integrated Gene Repression Mechanism Based on mRNA Isoform Toggling in Human Cells. G3 (Bethesda, Md.). PMID 30723103 DOI: 10.1534/g3.118.200802   
2019 Leandro J, Violante S, Argmann CA, Hagen J, Dodatko T, Bender A, Zhang W, Williams EG, Bachmann AM, Auwerx J, Yu C, Houten SM. Mild inborn errors of metabolism in commonly used inbred mouse strains. Molecular Genetics and Metabolism. PMID 30709776 DOI: 10.1016/j.ymgme.2019.01.021   
2019 Wilbertz JH, Voigt F, Horvathova I, Roth G, Zhan Y, Chao JA. Single-Molecule Imaging of mRNA Localization and Regulation during the Integrated Stress Response. Molecular Cell. PMID 30661979 DOI: 10.1016/j.molcel.2018.12.006   
2019 Kim YK, Maquat LE. UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond. Rna (New York, N.Y.). PMID 30655309 DOI: 10.1261/rna.070136.118   
2019 Kim YK, Maquat LE. UPFront and center in RNA decay: UPF1 in nonsense-mediated mRNA decay and beyond. Rna (New York, N.Y.). PMID 30655309 DOI: 10.1261/rna.070136.118   
2019 Wen J, Wang L, Wang J, Zeng Y, Xu Y, Li S. The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of TMS5. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 30778635 DOI: 10.1007/s00122-019-03310-7   
2019 Mayya VK, Duchaine TF. Ciphers and Executioners: How 3'-Untranslated Regions Determine the Fate of Messenger RNAs. Frontiers in Genetics. 10: 6. PMID 30740123 DOI: 10.3389/fgene.2019.00006   
2019 Wang M, Liu C, Wang W, Dong M, Zhang P, Liu Y, Wang L, Song L. A SPRY domain-containing SOCS box protein 3 (SPSB3) involved in the regulation of cytokine production in granulocytes of Crassostrea gigas. Developmental and Comparative Immunology. PMID 30711451 DOI: 10.1016/j.dci.2019.01.013   
2019 Idris M, Butcher NJ, Minchin RF. The MBNL/CELF Splicing Factors Regulate Cytosolic Sulfotransferase 4A1 protein expression During Cell Differentiation. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 30606728 DOI: 10.1124/dmd.118.085290   
2019 Moon SL, Morisaki T, Khong A, Lyon K, Parker R, Stasevich TJ. Multicolour single-molecule tracking of mRNA interactions with RNP granules. Nature Cell Biology. PMID 30664789 DOI: 10.1038/s41556-018-0263-4   
2019 Kiuchi T, Sugano Y, Shimada T, Katsuma S. Two CCCH-type zinc finger domains in the Masc protein are dispensable for masculinization and dosage compensation in Bombyx mori. Insect Biochemistry and Molecular Biology. 104: 30-38. PMID 30529581 DOI: 10.1016/j.ibmb.2018.12.003   
2019 Dierschke SK, Miller WP, Favate JS, Shah P, Imamura Kawasawa Y, Salzberg AC, Kimball SR, Jefferson LS, Dennis MD. O-GlcNAcylation alters the selection of mRNAs for translation and promotes 4E-BP1-dependent mitochondrial dysfunction in retina. The Journal of Biological Chemistry. PMID 30733333 DOI: 10.1074/jbc.RA119.007494   
2019 Lipscombe D, Lopez Soto EJ. Alternative splicing of neuronal genes: new mechanisms and new therapies. Current Opinion in Neurobiology. 57: 26-31. PMID 30703685 DOI: 10.1016/j.conb.2018.12.013   
2019 Balasingam N, Brandon H, Ross JA, Wieden HJ, Thakor N. Cellular roles of the human Obg-like ATPase 1 (hOLA1) and its bacterial homologue, YchF. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. PMID 30742486 DOI: 10.1139/bcb-2018-0353   
2019 Rajesh M, Kamalam BS, Ciji A, Akhtar MS, Pandey N, Gupta S, Sarma D, Sahu NP, Singh AK. Molecular characterisation and transcriptional regulation of muscle growth regulatory factors myogenin and myogenic factor 6 in the trans-Himalayan cyprinid fish Schizothorax richardsonii. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. PMID 30769163 DOI: 10.1016/j.cbpa.2019.02.007   
2019 Li P, Zhang J, Li X, Gao H. Tristetraprolin attenuates brain edema in a rat model of cerebral hemorrhage. Brain and Behavior. e01187. PMID 30729695 DOI: 10.1002/brb3.1187   
2019 Sheets MD. Assaying NanoLuc Luciferase Activity from mRNA-Injected Xenopus Embryos. Methods in Molecular Biology (Clifton, N.J.). 1920: 33-39. PMID 30737684 DOI: 10.1007/978-1-4939-9009-2_3   
2019 Tsang B, Arsenault J, Vernon RM, Lin H, Sonenberg N, Wang LY, Bah A, Forman-Kay JD. Phosphoregulated FMRP phase separation models activity-dependent translation through bidirectional control of mRNA granule formation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30765518 DOI: 10.1073/pnas.1814385116   
2019 Domokos D, Ducza E, Gáspár R. RhoA and Rho-kinase inhibitors modulate cervical resistance: The possible role of RhoA/Rho-kinase signalling pathway in cervical ripening and contractility. European Journal of Pharmacology. 843: 27-33. PMID 30445018 DOI: 10.1016/j.ejphar.2018.11.017   
2019 Mesitov MV, Yu T, Suematsu T, Sement FM, Zhang L, Yu C, Huang L, Aphasizheva I. Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in Trypanosoma brucei. Nature Communications. 10: 146. PMID 30635574 DOI: 10.1038/s41467-018-08137-2   
2019 Dixit R, Kumar A, Mohapatra B. Implication of GATA4 synonymous variants in congenital heart disease: A comprehensive in-silico approach. Mutation Research. 813: 31-38. PMID 30590232 DOI: 10.1016/j.mrfmmm.2018.12.002   
2019 O'Connell AE, Gerashchenko MV, O'Donohue MF, Rosen SM, Huntzinger E, Gleeson D, Galli A, Ryder E, Cao S, Murphy Q, Kazerounian S, Morton SU, Schmitz-Abe K, Gladyshev VN, Gleizes PE, et al. Mammalian Hbs1L deficiency causes congenital anomalies and developmental delay associated with Pelota depletion and 80S monosome accumulation. Plos Genetics. 15: e1007917. PMID 30707697 DOI: 10.1371/journal.pgen.1007917   
2019 Lorenzo-Orts L, Witthoeft J, Deforges J, Martinez J, Loubéry S, Placzek A, Poirier Y, Hothorn LA, Jaillais Y, Hothorn M. Concerted expression of a cell cycle regulator and a metabolic enzyme from a bicistronic transcript in plants. Nature Plants. 5: 184-193. PMID 30737513 DOI: 10.1038/s41477-019-0358-3