Jeffrey C. Smith - Publications

National Institute of Neurological Disorders and Stroke, Bethesda, MD, United States 
neural control of respiration

390 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Forn-Cuní G, Fulton KM, Smith JC, Twine SM, Mendoza-Barberà E, Tomás JM, Merino S. Polar Flagella Glycosylation in : Genomic Characterization and Involvement of a Specific Glycosyltransferase (Fgi-1) in Heterogeneous Flagella Glycosylation. Frontiers in Microbiology. 11: 595697. PMID 33584564 DOI: 10.3389/fmicb.2020.595697  0.01
2020 Shields SWJ, Rosales CA, Roberts JA, Pallister PJ, Wasslen KV, Manthorpe JM, Smith JC. iTrEnDi: In Situ Trimethylation Enhancement Using Diazomethane: Improved and Expanded Glycerophospholipid and Sphingolipid Analyses via a Microscale Autonomous Derivatization Platform. Analytical Chemistry. PMID 33300778 DOI: 10.1021/acs.analchem.0c04088  0.01
2020 Vanderburg A, Rappaport SA, Xu S, Crossfield IJM, Becker JC, Gary B, Murgas F, Blouin S, Kaye TG, Palle E, Melis C, Morris BM, Kreidberg L, Gorjian V, Morley CV, ... Smith JC, et al. A giant planet candidate transiting a white dwarf. Nature. 585: 363-367. PMID 32939071 DOI: 10.1038/s41586-020-2713-y  0.01
2020 Hosford PS, Ninkina N, Buchman VL, Smith JC, Marina N, SheikhBahaei S. Synuclein Deficiency Results in Age-Related Respiratory and Cardiovascular Dysfunctions in Mice. Brain Sciences. 10. PMID 32846874 DOI: 10.3390/Brainsci10090583  0.92
2020 Franklin ET, Shields SWJ, Manthorpe JM, Smith JC, Xia Y, McLuckey SA. Coupling Headgroup and Alkene Specific Solution Modifications with Gas-Phase Ion/Ion Reactions for Sensitive Glycerophospholipid Identification and Characterization. Journal of the American Society For Mass Spectrometry. 31: 938-945. PMID 32233382 DOI: 10.1021/Jasms.0C00001  0.01
2019 Rubin JE, Smith JC. Robustness of respiratory rhythm generation across dynamic regimes. Plos Computational Biology. 15: e1006860. PMID 31361738 DOI: 10.1371/Journal.Pcbi.1006860  1
2019 Phillips RS, John TT, Koizumi H, Molkov YI, Smith JC. Biophysical mechanisms in the mammalian respiratory oscillator re-examined with a new data-driven computational model. Elife. 8. PMID 30907727 DOI: 10.7554/Elife.41555  1
2019 Phillips RS, John TT, Koizumi H, Molkov YI, Smith JC. Author response: Biophysical mechanisms in the mammalian respiratory oscillator re-examined with a new data-driven computational model Elife. DOI: 10.7554/Elife.41555.018  1
2018 Thompson SE, Coughlin JL, Hoffman K, Mullally F, Christiansen JL, Burke CJ, Bryson S, Batalha N, Haas MR, Catanzarite J, Rowe JF, Barentsen G, Caldwell DA, Clarke BD, Jenkins JM, ... Smith JC, et al. PLANETARY CANDIDATES OBSERVED BY . VIII. A FULLY AUTOMATED CATALOG WITH MEASURED COMPLETENESS AND RELIABILITY BASED ON DATA RELEASE 25. The Astrophysical Journal. Supplement Series. 235. PMID 32908325 DOI: 10.3847/1538-4365/Aab4F9  0.01
2018 Huang CX, Burt J, Vanderburg A, Günther MN, Shporer A, Dittmann JA, Winn JN, Wittenmyer R, Sha L, Kane SR, Ricker GR, Vanderspek RK, Latham DW, Seager S, Jenkins JM, ... Smith JC, et al. TESS DISCOVERY OF A TRANSITING SUPER-EARTH IN THE MENSAE SYSTEM. The Astrophysical Journal. Letters. 868. PMID 31360431 DOI: 10.3847/2041-8213/Aaef91  0.01
2018 Dutta DJ, Woo DH, Lee PR, Pajevic S, Bukalo O, Huffman WC, Wake H, Basser PJ, SheikhBahaei S, Lazarevic V, Smith JC, Fields RD. Regulation of myelin structure and conduction velocity by perinodal astrocytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30373833 DOI: 10.1073/Pnas.1811013115  0.92
2018 Yamanishi T, Koizumi H, Navarro MA, Milescu LS, Smith JC. Kinetic properties of persistent Na current orchestrate oscillatory bursting in respiratory neurons. The Journal of General Physiology. PMID 30301870 DOI: 10.1085/Jgp.201812100  1
2018 Sheikhbahaei S, Morris B, Collina J, Anjum S, Znati S, Gamarra J, Zhang R, Gourine AV, Smith JC. Morphometric analysis of astrocytes in brainstem respiratory regions. The Journal of Comparative Neurology. PMID 29888789 DOI: 10.1002/Cne.24472  0.92
2018 Fulcher LJ, Bozatzi P, Tachie-Menson T, Wu KZL, Cummins TD, Bufton JC, Pinkas DM, Dunbar K, Shrestha S, Wood NT, Weidlich S, Macartney TJ, Varghese J, Gourlay R, Campbell DG, ... Smith JC, et al. The DUF1669 domain of FAM83 family proteins anchor casein kinase 1 isoforms. Science Signaling. 11. PMID 29789297 DOI: 10.1126/Scisignal.Aao2341  0.01
2018 Ausborn J, Koizumi H, Barnett WH, John TT, Zhang R, Molkov YI, Smith JC, Rybak IA. Organization of the core respiratory network: Insights from optogenetic and modeling studies. Plos Computational Biology. 14: e1006148. PMID 29698394 DOI: 10.1371/Journal.Pcbi.1006148  1
2018 Koizumi H, John TT, Chia JX, Tariq MF, Phillips RS, Mosher B, Chen Y, Thompson R, Zhang R, Koshiya N, Smith JC. Transient Receptor Potential Channels TRPM4 and TRPC3 Critically Contribute to Respiratory Motor Pattern Formation but not Rhythmogenesis in Rodent Brainstem Circuits. Eneuro. 5. PMID 29435486 DOI: 10.1523/ENEURO.0332-17.2018  0.84
2018 Fulton KM, Li J, Tomas JM, Smith JC, Twine SM. Characterizing bacterial glycoproteins with LC-MS. Expert Review of Proteomics. PMID 29400572 DOI: 10.1080/14789450.2018.1435276  0.01
2018 Sheikhbahaei S, Turovsky EA, Hosford PS, Hadjihambi A, Theparambil SM, Liu B, Marina N, Teschemacher AG, Kasparov S, Smith JC, Gourine AV. Astrocytes modulate brainstem respiratory rhythm-generating circuits and determine exercise capacity. Nature Communications. 9: 370. PMID 29371650 DOI: 10.1038/S41467-017-02723-6  0.92
2017 Sheikhbahaei S, Gourine AV, Smith JC. Respiratory rhythm irregularity after carotid body denervation in rats. Respiratory Physiology & Neurobiology. PMID 28782663 DOI: 10.1016/J.Resp.2017.08.001  0.92
2017 Betancourt SK, Canez CR, Shields SWJ, Manthorpe JM, Smith JC, McLuckey SA. Trimethylation Enhancement Using 13C Diazomethane (13C-TrEnDi): Gas-Phase Charge Inversion of Modified Phospholipid Cations for Enhanced Structural Characterization. Analytical Chemistry. PMID 28764333 DOI: 10.1021/Acs.Analchem.7B02271  0.01
2017 Sharpe MJ, Marchant NJ, Whitaker LR, Richie CT, Zhang YJ, Campbell EJ, Koivula PP, Necarsulmer JC, Mejias-Aponte C, Morales M, Pickel J, Smith JC, Niv Y, Shaham Y, Harvey BK, et al. Lateral Hypothalamic GABAergic Neurons Encode Reward Predictions that Are Relayed to the Ventral Tegmental Area to Regulate Learning. Current Biology : Cb. PMID 28690111 DOI: 10.1016/J.Cub.2017.06.024  0.01
2017 Richie CT, Whitaker LR, Whitaker KW, Necarsulmer J, Baldwin HA, Zhang Y, Fortuno L, Hinkle JJ, Koivula P, Henderson MJ, Sun W, Wang K, Smith JC, Pickel J, Ji N, et al. Near-infrared fluorescent protein iRFP713 as a reporter protein for optogenetic vectors, a transgenic Cre-reporter rat, and other neuronal studies. Journal of Neuroscience Methods. PMID 28380331 DOI: 10.1016/J.Jneumeth.2017.03.020  0.01
2017 Sheikhbahaei S, Smith JC. Breathing to inspire and arouse. Science (New York, N.Y.). 355: 1370-1371. PMID 28360280 DOI: 10.1126/Science.Aan1466  0.92
2017 Tessier SN, Luu BE, Smith JC, Storey KB. The role of global histone post-translational modifications during mammalian hibernation. Cryobiology. PMID 28257856 DOI: 10.1016/j.cryobiol.2017.02.008  0.01
2016 Molkov YI, Rubin JE, Rybak IA, Smith JC. Computational models of the neural control of breathing. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 28009109 DOI: 10.1002/Wsbm.1371  1
2016 Sharpee TO, Destexhe A, Kawato M, Sekulić V, Skinner FK, Wójcik DK, Chintaluri C, Cserpán D, Somogyvári Z, Kim JK, Kilpatrick ZP, Bennett MR, Josić K, Elices I, Arroyo D, ... ... Smith J, et al. 25th Annual Computational Neuroscience Meeting: CNS-2016 Bmc Neuroscience. 17: 54. PMID 27534393 DOI: 10.1186/S12868-016-0283-6  1
2016 Canez CR, Shields SW, Bugno M, Wasslen K, Weinert H, Willmore WG, Manthorpe JM, Smith JC. Trimethylation enhancement using (13)C-diazomethane ((13)C-TrEnDi): Increased sensitivity and selectivity of phosphatidylethanolamine, phosphatidylcholine and phosphatidylserine lipids derived from complex biological samples. Analytical Chemistry. PMID 27275841 DOI: 10.1021/Acs.Analchem.5B04524  1
2016 Koizumi H, Mosher B, Tariq MF, Zhang R, Koshiya N, Smith JC. Voltage-Dependent Rhythmogenic Property of Respiratory Pre-Bötzinger Complex Glutamatergic, Dbx1-Derived, and Somatostatin-Expressing Neuron Populations Revealed by Graded Optogenetic Inhibition. Eneuro. 3. PMID 27275007 DOI: 10.1523/ENEURO.0081-16.2016  0.84
2016 Dornan MH, Krishnan R, Macklin AM, Selman M, El Sayes N, Son HH, Davis C, Chen A, Keillor K, Le PJ, Moi C, Ou P, Pardin C, Canez CR, Le Boeuf F, ... Smith JC, et al. First-in-class small molecule potentiators of cancer virotherapy. Scientific Reports. 6: 26786. PMID 27226390 DOI: 10.1038/Srep26786  1
2016 Marchenko V, Koizumi H, Mosher B, Koshiya N, Tariq MF, Bezdudnaya TG, Zhang R, Molkov YI, Rybak IA, Smith JC. Perturbations of Respiratory Rhythm and Pattern by Disrupting Synaptic Inhibition within Pre-Bötzinger and Bötzinger Complexes. Eneuro. 3. PMID 27200412 DOI: 10.1523/ENEURO.0011-16.2016  1
2016 Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA. Mixed-mode oscillations and population bursting in the pre-Bӧtzinger complex. Elife. 5. PMID 26974345 DOI: 10.7554/Elife.13403  1
2016 Fulton KM, Smith JC, Twine SM. Clinical applications of bacterial glycoproteins. Expert Review of Proteomics. PMID 26971465 DOI: 10.1586/14789450.2016.1166054  0.01
2016 Petridis L, Smith JC. Conformations of Low-Molecular-Weight Lignin Polymers in Water. Chemsuschem. PMID 26763657 DOI: 10.1002/Cssc.201501350  0.01
2016 Smith MD, Mostofian B, Petridis L, Cheng X, Smith JC. Molecular Driving Forces Behind the Tetrahydrofuran-Water Miscibility Gap. The Journal of Physical Chemistry. B. PMID 26734991 DOI: 10.1021/Acs.Jpcb.5B09770  0.04
2016 Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA. Author response: Mixed-mode oscillations and population bursting in the pre-Bötzinger complex Elife. DOI: 10.7554/Elife.13403.013  1
2016 Senigaglia V, Christiansen F, Bejder L, Gendron D, Lundquist D, Noren DP, Schaffar A, Smith JC, Williams R, Martinez E, Stockin K, Lusseau D. Meta-analyses of whale-watching impact studies: Comparisons of cetacean responses to disturbance Marine Ecology Progress Series. 542: 251-263. DOI: 10.3354/Meps11497  0.01
2015 Vermaas JV, Petridis L, Qi X, Schulz R, Lindner B, Smith JC. Mechanism of lignin inhibition of enzymatic biomass deconstruction. Biotechnology For Biofuels. 8: 217. PMID 26697106 DOI: 10.1186/S13068-015-0379-8  0.04
2015 Lotufo GR, Coleman JG, Harmon AR, Chappell MA, Bednar AJ, Russell AL, Smith JC, Brasfield SM. Accumulation of 2,4-dinitroanisole in the earthworm Eisenia fetida from chemically spiked and aged natural soils. Environmental Toxicology and Chemistry / Setac. PMID 26666709 DOI: 10.1002/etc.3338  0.01
2015 Bumpass DB, Fuhrhop SK, Schootman M, Smith JC, Luhmann SJ. Vertebral Body Stapling for Moderate Juvenile and Early Adolescent Idiopathic Scoliosis: Cautions and Patient Selection Criteria. Spine. 40: E1305-E1314. PMID 26655807 DOI: 10.1097/BRS.0000000000001135  0.01
2015 Salib CG, Smith JC, Siow N, Luhmann SJ. Delayed Wound Dehiscence of Anterior Knee Incisions in Patients Aged 20 Years and Younger: A Comparison of Subcutaneous Skin Closure. Journal of Pediatric Orthopedics. PMID 26650578 DOI: 10.1097/BPO.0000000000000706  0.01
2015 Rayner PJ, Smith JC, Denneval C, O'Brien P, Clarke PA, Horan RA. Mechanistic interrogation of the asymmetric lithiation-trapping of N-thiopivaloyl azetidine and pyrrolidine. Chemical Communications (Cambridge, England). PMID 26620913 DOI: 10.1039/C5Cc08690F  0.01
2015 Gopal Vandavasi V, Putnam DK, Zhang Q, Petridis L, Heller WT, Nixon BT, Haigler CH, Kalluri U, Coates L, Langan P, Smith JC, Meiler J, O'Neill H. A Structural Study of CESA1 catalytic domain of Arabidopsis thaliana Cellulose Synthesis Complex: Evidence for CESA trimers. Plant Physiology. PMID 26556795 DOI: 10.1104/Pp.15.01356  0.01
2015 Russell SB, Smith JC, Huang M, Trupin JS, Williams SM. Pleiotropic Effects of Immune Responses Explain Variation in the Prevalence of Fibroproliferative Diseases. Plos Genetics. 11: e1005568. PMID 26540410 DOI: 10.1371/Journal.Pgen.1005568  0.01
2015 Smith CA, Farmer K, Lee H, Holahan MR, Smith JC. Altered Hippocampal Lipid Profile Following Acute Postnatal Exposure to Di(2-Ethylhexyl) Phthalate in Rats. International Journal of Environmental Research and Public Health. 12: 13542-59. PMID 26516880 DOI: 10.3390/ijerph121013542  1
2015 Wejnert C, Hess KL, Rose CE, Balaji A, Smith JC, Paz-Bailey G. Age-specific race and ethnicity disparities in HIV infection and awareness among men who have sex with men-20 U.S. cities, 2008 to 2014. The Journal of Infectious Diseases. PMID 26486637 DOI: 10.1093/Infdis/Jiv500  0.08
2015 Pi M, Kapoor K, Wu Y, Ye R, Senogles SE, Nishimoto SK, Hwang DJ, Miller DD, Narayanan R, Smith JC, Baudry J, Quarles LD. Structural and Functional Evidence for Testosterone Activation of GPRC6A in Peripheral Tissues. Molecular Endocrinology (Baltimore, Md.). me20151161. PMID 26440882 DOI: 10.1210/Me.2015-1161  0.01
2015 Nickels JD, Cheng X, Mostofian B, Stanley C, Lindner B, Heberle FA, Perticaroli S, Feygenson M, Egami T, Standaert RF, Smith JC, Myles DA, Ohl M, Katsaras J. Mechanical properties of nanoscopic lipid domains. Journal of the American Chemical Society. PMID 26415030 DOI: 10.1021/Jacs.5B08894  0.04
2015 Carrascal DJ, Ferrer J, Smith JC, Burke K. The Hubbard dimer: a density functional case study of a many-body problem. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 393001. PMID 26380948 DOI: 10.1088/0953-8984/27/39/393001  0.01
2015 Lee RM, Rothstein JD, Gergen J, Zachary DA, Smith JC, Palmer AM, Gittelsohn J, Surkan PJ. Process Evaluation of a Comprehensive Supermarket Intervention in a Low-Income Baltimore Community. Health Promotion Practice. PMID 26296352 DOI: 10.1177/1524839915599359  0.01
2015 Smith JC, Lancaster MA, Nielson KA, Woodard JL, Seidenberg M, Durgerian S, Sakaie K, Rao SM. Interactive effects of physical activity and APOE-ε4 on white matter tract diffusivity in healthy elders. Neuroimage. PMID 26265157 DOI: 10.1016/J.Neuroimage.2015.08.007  0.01
2015 Nickels JD, Smith JC, Cheng X. Lateral organization, bilayer asymmetry, and inter-leaflet coupling of biological membranes. Chemistry and Physics of Lipids. PMID 26232661 DOI: 10.1016/J.Chemphyslip.2015.07.012  0.01
2015 Douglass K, Pousson A, Gidwani S, Smith J. Postgraduate Emergency Medicine Training in India: An Educational Partnership with the Private Sector. The Journal of Emergency Medicine. PMID 26095219 DOI: 10.1016/j.jemermed.2015.03.010  0.01
2015 Vural D, Hong L, Smith JC, Glyde HR. Motional displacements in proteins: The origin of wave-vector-dependent values. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 052705. PMID 26066197 DOI: 10.1103/Physreve.91.052705  0.04
2015 Cournia Z, Allen TW, Andricioaei I, Antonny B, Baum D, Brannigan G, Buchete NV, Deckman JT, Delemotte L, Del Val C, Friedman R, Gkeka P, Hege HC, Hénin J, Kasimova MA, ... Smith JC, et al. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. The Journal of Membrane Biology. 248: 611-40. PMID 26063070 DOI: 10.1007/S00232-015-9802-0  0.04
2015 Faial T, Bernardo AS, Mendjan S, Diamanti E, Ortmann D, Gentsch GE, Mascetti VL, Trotter MW, Smith JC, Pedersen RA. Brachyury and SMAD signalling collaboratively orchestrate distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells. Development (Cambridge, England). 142: 2121-35. PMID 26015544 DOI: 10.1242/Dev.117838  0.01
2015 Chung WM, Smith JC, Weil LM, Hughes SM, Joyner SN, Hall EM, Ritch J, Srinath D, Goodman E, Chevalier MS, Epstein L, Hunter JC, Kallen AJ, Karwowski MP, Kuhar DT, et al. Active Tracing and Monitoring of Contacts Associated With the First Cluster of Ebola in the United States. Annals of Internal Medicine. PMID 26005809 DOI: 10.7326/M15-0968  0.01
2015 Blackman AJ, Smith JC, Luhmann SJ. Arthroscopic Lateral Retinacular Release in Adolescents With Medial Patellofemoral Ligament-centered Knee Pain. Journal of Pediatric Orthopedics. PMID 25851673 DOI: 10.1097/BPO.0000000000000445  0.01
2015 Riccardi D, Parks JM, Johs A, Smith JC. HackaMol: An Object-Oriented Modern Perl Library for Molecular Hacking on Multiple Scales. Journal of Chemical Information and Modeling. 55: 721-6. PMID 25793330 DOI: 10.1021/Ci500359E  0.04
2015 Feldstein S, Funk T, Smith JC, Bruckner AL. Agminated flexural melanocytic nevi: a late sequela of langerhans cell histiocytosis? Pediatric Dermatology. 32: e89-91. PMID 25787131 DOI: 10.1111/pde.12563  0.01
2015 Daidone I, Thukral L, Smith JC, Amadei A. Monitoring the folding kinetics of a β-hairpin by time-resolved IR spectroscopy in silico. The Journal of Physical Chemistry. B. 119: 4849-56. PMID 25777154 DOI: 10.1021/Acs.Jpcb.5B01477  0.04
2015 Rush SW, Gerald AE, Smith JC, Rush JA, Rush RB. Prospective analysis of outcomes and economic factors of same-day bilateral cataract surgery in the United States. Journal of Cataract and Refractive Surgery. 41: 732-9. PMID 25754380 DOI: 10.1016/j.jcrs.2014.07.034  0.01
2015 Gentsch GE, Patrushev I, Smith JC. Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq. Journal of Visualized Experiments : Jove. PMID 25742027 DOI: 10.3791/52535  0.01
2015 Valentine MA, Perdue CL, Cummings JF, Smith JC, Gray GC. Evaluation of the certificate in emerging infectious disease research and the certificate in one health training programs, University of Florida. Journal of Epidemiology and Global Health. 5: 23-31. PMID 25700920 DOI: 10.1016/J.Jegh.2014.10.004  0.01
2015 Rao SM, Bonner-Jackson A, Nielson KA, Seidenberg M, Smith JC, Woodard JL, Durgerian S. Genetic risk for Alzheimer's disease alters the five-year trajectory of semantic memory activation in cognitively intact elders. Neuroimage. 111: 136-46. PMID 25687593 DOI: 10.1016/J.Neuroimage.2015.02.011  0.01
2015 Smith CL, Hughes SM, Karwowski MP, Chevalier MS, Hall E, Joyner SN, Ritch J, Smith JC, Weil LM, Chung WM, Schrag S, Santibañez S. Addressing needs of contacts of Ebola patients during an investigation of an Ebola cluster in the United States - Dallas, Texas, 2014. Mmwr. Morbidity and Mortality Weekly Report. 64: 121-3. PMID 25674993  0.01
2015 Prewitt T, Smith JC, Bell JP. The legendary Smiths and their Paris hospital. The Journal of the Arkansas Medical Society. 111: 158-61. PMID 25665254  0.01
2015 Dick TE, Dutschmann M, Feldman JL, Fong AY, Hülsmann S, Morris KM, Ramirez JM, Smith JC. Facts and challenges in respiratory neurobiology. Respiratory Physiology & Neurobiology. PMID 25644207 DOI: 10.1016/J.Resp.2015.01.014  1
2015 Topham CM, Smith JC. Tri-peptide reference structures for the calculation of relative solvent accessible surface area in protein amino acid residues. Computational Biology and Chemistry. 54: 33-43. PMID 25544680 DOI: 10.1016/J.Compbiolchem.2014.11.007  0.01
2015 Kauffman DC, Clark JF, Smith JC. The influence of sport goggles on visual target detection in female intercollegiate athletes. Journal of Sports Sciences. 33: 1117-23. PMID 25537065 DOI: 10.1080/02640414.2014.987156  0.01
2015 Torregrossa AM, Loney GC, Smith JC, Eckel LA. Examination of the perception of sweet- and bitter-like taste qualities in sucralose preferring and avoiding rats. Physiology & Behavior. 140: 96-103. PMID 25497078 DOI: 10.1016/j.physbeh.2014.12.023  0.01
2015 Carmona C, Langan P, Smith JC, Petridis L. Why genetic modification of lignin leads to low-recalcitrance biomass. Physical Chemistry Chemical Physics : Pccp. 17: 358-64. PMID 25384960 DOI: 10.1039/C4Cp05004E  0.01
2015 Abdala AP, Paton JF, Smith JC. Defining inhibitory neurone function in respiratory circuits: opportunities with optogenetics? The Journal of Physiology. 593: 3033-46. PMID 25384785 DOI: 10.1113/Jphysiol.2014.280610  1
2015 Lindner B, Petridis L, Langan P, Smith JC. Determination of cellulose crystallinity from powder diffraction diagrams. Biopolymers. 103: 67-73. PMID 25269646 DOI: 10.1002/Bip.22555  0.04
2015 Ellingson SR, Miao Y, Baudry J, Smith JC. Multi-conformer ensemble docking to difficult protein targets. The Journal of Physical Chemistry. B. 119: 1026-34. PMID 25198248 DOI: 10.1021/Jp506511P  0.04
2015 Wolter T, Elstner M, Fischer S, Smith JC, Bondar AN. Mechanism by which untwisting of retinal leads to productive bacteriorhodopsin photocycle states. The Journal of Physical Chemistry. B. 119: 2229-40. PMID 25196390 DOI: 10.1021/Jp505818R  0.04
2015 Smith JC, Walker SR. Surviving an abdominal aortic aneurysm type II endoleak rupture without surgical intervention. Vascular. 23: 201-3. PMID 24939919 DOI: 10.1177/1708538114540642  0.01
2015 Beckett CTS, Smith JC, Ciancio D, Augarde CE. Tensile strengths of flocculated compacted unsaturated soils Geotechnique Letters. 5: 254-260. DOI: 10.1680/jgele.15.00087  0.01
2015 Smith JC, Carriveau R, Ting DSK. Turbine power production sensitivity to coastal sheared and turbulent inflows Wind Engineering. 39: 183-192. DOI: 10.1260/0309-524X.39.2.183  0.01
2015 Smith JC. Pay Growth, Fairness, and Job Satisfaction: Implications for Nominal and Real Wage Rigidity Scandinavian Journal of Economics. 117: 852-877. DOI: 10.1111/sjoe.12091  0.01
2015 Acevedo MA, Sefair JA, Smith JC, Reichert B, Fletcher RJ. Conservation under uncertainty: Optimal network protection strategies for worst-case disturbance events Journal of Applied Ecology. 52: 1588-1597. DOI: 10.1111/1365-2664.12532  0.01
2015 Blumsack S, Poolla K, Smith JC. Introduction to distributed and renewable electric energy resources minitrack Proceedings of the Annual Hawaii International Conference On System Sciences. 2015: 2566. DOI: 10.1109/HICSS.2015.308  0.01
2015 Mullally F, Coughlin JL, Thompson SE, Rowe J, Burke C, Latham DW, Batalha NM, Bryson ST, Christiansen J, Henze CE, Ofir A, Quarles B, Shporer A, Eylen VV, Laerhoven CV, ... Smith JC, et al. Planetary candidates observed by kepler. VI. planet sample from Q1-Q16 (47 months) Astrophysical Journal, Supplement Series. 217. DOI: 10.1088/0067-0049/217/2/31  0.01
2015 Seader S, Jenkins JM, Tenenbaum P, Twicken JD, Smith JC, Morris R, Catanzarite J, Clarke BD, Li J, Cote MT, Burke CJ, McCauliff S, Girouard FR, Campbell JR, Uddin AK, et al. DETECTION of POTENTIAL TRANSIT SIGNALS in 17 QUARTERS of KEPLER MISSION DATA Astrophysical Journal, Supplement Series. 217. DOI: 10.1088/0067-0049/217/1/18  0.01
2015 Rowe JF, Coughlin JL, Antoci V, Barclay T, Batalha NM, Borucki WJ, Burke CJ, Bryson ST, Caldwell DA, Campbell JR, Catanzarite JH, Christiansen JL, Cochran W, Gilliland RL, Girouard FR, ... Smith JC, et al. PLANETARY CANDIDATES OBSERVED by KEPLER. V. PLANET SAMPLE from Q1-Q12 (36 MONTHS) Astrophysical Journal, Supplement Series. 217. DOI: 10.1088/0067-0049/217/1/16  0.01
2015 Christiansen JL, Clarke BD, Burke CJ, Seader S, Jenkins JM, Twicken JD, Catanzarite JD, Smith JC, Batalha NM, Haas MR, Thompson SE, Campbell JR, Sabale A, Uddin AKMK. Measuring transit signal recovery in the kepler pipeline. II. Detection efficiency as calculated in one year of data Astrophysical Journal. 810. DOI: 10.1088/0004-637X/810/2/95  0.01
2015 Gilliland RL, Chaplin WJ, Jenkins JM, Ramsey LW, Smith JC. KEPLER MISSION STELLAR and INSTRUMENT NOISE PROPERTIES REVISITED Astronomical Journal. 150. DOI: 10.1088/0004-6256/150/4/133  0.01
2015 Romich A, Lan G, Smith JC. Algorithms for optimizing the placement of stationary monitors Iie Transactions (Institute of Industrial Engineers). 47: 556-576. DOI: 10.1080/0740817X.2014.953646  0.01
2015 Hu X, Hong L, Dean Smith M, Neusius T, Cheng X, Smith JC. The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time Nature Physics. DOI: 10.1038/Nphys3553  0.01
2015 Abraham MJ, Murtola T, Schulz R, Páall S, Smith JC, Hess B, Lindah E. Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers Softwarex. 1: 19-25. DOI: 10.1016/J.Softx.2015.06.001  0.04
2015 Wheatley VJ, Smith JC, Finlay IG. Ethical issues in palliative care Medicine (United Kingdom). 43: 742-744. DOI: 10.1016/j.mpmed.2015.09.005  0.01
2015 Miller M, Smith JC. In the shadow of the Gulag: Worker discipline under Stalin Journal of Comparative Economics. 43: 531-548. DOI: 10.1016/j.jce.2015.01.005  0.01
2015 Sonuc SB, Smith JC, Hicks IV. A branch-and-price-and-cut method for computing an optimal bramble Discrete Optimization. 18: 168-188. DOI: 10.1016/J.Disopt.2015.09.005  0.01
2015 Nickels JD, Smith JC, Cheng X. Lateral organization, bilayer asymmetry, and inter-leaflet coupling of biological membranes Chemistry and Physics of Lipids. DOI: 10.1016/j.chemphyslip.2015.07.012  0.04
2015 Tadayon B, Smith JC. Algorithms and Complexity Analysis for Robust Single-Machine Scheduling Problems Journal of Scheduling. DOI: 10.1007/s10951-015-0418-0  0.01
2015 Tang Y, Richard JPP, Smith JC. A class of algorithms for mixed-integer bilevel min–max optimization Journal of Global Optimization. DOI: 10.1007/S10898-015-0274-7  0.01
2015 Büke B, Smith JC, Thomas S. On a Random Walk Survivability problem with arc failures and memory Networks. 66: 67-86. DOI: 10.1002/Net.21608  0.01
2015 Romich A, Lan G, Smith JC. A robust sensor covering and communication problem Naval Research Logistics. DOI: 10.1002/Nav.21665  0.01
2015 Smith JC, Alfini AJ, Smith TJ, Weiss LRF. The role of physical activity for brain health through alzheimer's disease progression Therapeutic Physical Activities For People With Disability. 181-213.  0.01
2015 Smith JC, Augarde CE. The role of clay and sand in the mechanics of Soil-Based Construction Materials Rammed Earth Construction - Proceedings of the 1st International Conference On Rammed Earth Construction, Icrec 2015. 145-150.  0.01
2015 Smith CL, Hughes SM, Karwowski MP, Chevalier MS, Hall E, Joyner SN, Ritch J, Smith JC, Weil LM, Chung WM, Schrag S, Santibañez S. Addressing needs of contacts of ebola patients during an investigation of an ebola cluster in the united states—Dallas, Texas, 2014 Morbidity and Mortality Weekly Report. 64: 121-123.  0.01
2015 Smith JC, Augarde CE. XRCT scanning of unsaturated soil: Microstructure at different scales? Geomechanics From Micro to Macro - Proceedings of the Tc105 Issmge International Symposium On Geomechanics From Micro to Macro, Is-Cambridge 2014. 2: 1137-1142.  0.01
2014 Erler J, Zhang R, Petridis L, Cheng X, Smith JC, Langowski J. The role of histone tails in the nucleosome: a computational study. Biophysical Journal. 107: 2911-22. PMID 25517156 DOI: 10.1016/J.Bpj.2014.10.065  0.44
2014 Bell RA, Smith JC, Storey KB. Purification and properties of glyceraldehyde-3-phosphate dehydrogenase from the skeletal muscle of the hibernating ground squirrel, Ictidomys tridecemlineatus. Peerj. 2: e634. PMID 25374779 DOI: 10.7717/peerj.634  0.01
2014 Lian P, Guo HB, Riccardi D, Dong A, Parks JM, Xu Q, Pai EF, Miller SM, Wei DQ, Smith JC, Guo H. X-ray structure of a Hg2+ complex of mercuric reductase (MerA) and quantum mechanical/molecular mechanical study of Hg2+ transfer between the C-terminal and buried catalytic site cysteine pairs. Biochemistry. 53: 7211-22. PMID 25343681 DOI: 10.1021/Bi500608U  0.04
2014 Smith JC, Hinman AR, Pickering LK. History and evolution of the advisory committee on immunization practices--United States, 1964-2014. Mmwr. Morbidity and Mortality Weekly Report. 63: 955-8. PMID 25340913  0.01
2014 Petridis L, O'Neill HM, Johnsen M, Fan B, Schulz R, Mamontov E, Maranas J, Langan P, Smith JC. Hydration control of the mechanical and dynamical properties of cellulose. Biomacromolecules. 15: 4152-9. PMID 25325376 DOI: 10.1021/Bm5011849  0.04
2014 Molkov YI, Shevtsova NA, Park C, Ben-Tal A, Smith JC, Rubin JE, Rybak IA. A closed-loop model of the respiratory system: focus on hypercapnia and active expiration. Plos One. 9: e109894. PMID 25302708 DOI: 10.1371/Journal.Pone.0109894  1
2014 Langley AR, Smith JC, Stemple DL, Harvey SA. New insights into the maternal to zygotic transition. Development (Cambridge, England). 141: 3834-41. PMID 25294937 DOI: 10.1242/Dev.102368  0.01
2014 Vaughan L, Erickson KI, Espeland MA, Smith JC, Tindle HA, Rapp SR. Concurrent and longitudinal relationships between cognitive activity, cognitive performance, and brain volume in older adult women. The Journals of Gerontology. Series B, Psychological Sciences and Social Sciences. 69: 826-36. PMID 25209372 DOI: 10.1093/Geronb/Gbu109  0.01
2014 Wasslen KV, Canez CR, Lee H, Manthorpe JM, Smith JC. Trimethylation enhancement using diazomethane (TrEnDi) II: rapid in-solution concomitant quaternization of glycerophospholipid amino groups and methylation of phosphate groups via reaction with diazomethane significantly enhances sensitivity in mass spectrometry analyses via a fixed, permanent positive charge. Analytical Chemistry. 86: 9523-32. PMID 25208053 DOI: 10.1021/Ac501588Y  1
2014 Mostofian B, Cheng X, Smith JC. Replica-exchange molecular dynamics simulations of cellulose solvated in water and in the ionic liquid 1-butyl-3-methylimidazolium chloride. The Journal of Physical Chemistry. B. 118: 11037-49. PMID 25180945 DOI: 10.1021/Jp502889C  0.04
2014 Torregrossa AM, Nikonova L, Bales MB, Villalobos Leal M, Smith JC, Contreras RJ, Eckel LA. Induction of salivary proteins modifies measures of both orosensory and postingestive feedback during exposure to a tannic acid diet. Plos One. 9: e105232. PMID 25162297 DOI: 10.1371/Journal.Pone.0105232  0.01
2014 Smith JC, Mailman T, MacDonald NE. West Nile virus: should pediatricians care? The Journal of Infection. 69: S70-6. PMID 25138381 DOI: 10.1016/j.jinf.2014.07.019  0.01
2014 Langan P, Sangha AK, Wymore T, Parks JM, Yang ZK, Hanson BL, Fisher Z, Mason SA, Blakeley MP, Forsyth VT, Glusker JP, Carrell HL, Smith JC, Keen DA, Graham DE, et al. L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study. Structure (London, England : 1993). 22: 1287-300. PMID 25132082 DOI: 10.1016/J.Str.2014.07.002  0.04
2014 Smith JC, Sheltzer J, Austin J. A scientific partnership. Science (New York, N.Y.). 345: 478. PMID 25061213 DOI: 10.1126/science.345.6195.478  0.01
2014 Bowden GE, Smith JC, Parker PA, Boxall MJ. Working on the Edge: Stresses and Rewards of Work in a Front-line Mental Health Service. Clinical Psychology & Psychotherapy. PMID 25044605 DOI: 10.1002/cpp.1912  0.01
2014 Hong L, Sharp MA, Poblete S, Biehl R, Zamponi M, Szekely N, Appavou MS, Winkler RG, Nauss RE, Johs A, Parks JM, Yi Z, Cheng X, Liang L, Ohl M, ... ... Smith JC, et al. Structure and dynamics of a compact state of a multidomain protein, the mercuric ion reductase. Biophysical Journal. 107: 393-400. PMID 25028881 DOI: 10.1016/J.Bpj.2014.06.013  0.04
2014 Moritsugu K, Kidera A, Smith JC. Solvent friction effects propagate over the entire protein molecule through low-frequency collective modes. The Journal of Physical Chemistry. B. 118: 8559-65. PMID 24999844 DOI: 10.1021/Jp503956M  0.04
2014 Sheltzer JM, Smith JC. Elite male faculty in the life sciences employ fewer women. Proceedings of the National Academy of Sciences of the United States of America. 111: 10107-12. PMID 24982167 DOI: 10.1073/pnas.1403334111  0.01
2014 Boname JM, Bloor S, Wandel MP, Nathan JA, Antrobus R, Dingwell KS, Thurston TL, Smith DL, Smith JC, Randow F, Lehner PJ. Cleavage by signal peptide peptidase is required for the degradation of selected tail-anchored proteins. The Journal of Cell Biology. 205: 847-62. PMID 24958774 DOI: 10.1083/Jcb.201312009  0.01
2014 Poole CD, Smith JC, Davies JS. The short-term impact of vitamin D-based hip fracture prevention in older adults in the United Kingdom. Journal of Endocrinological Investigation. 37: 811-7. PMID 24957166 DOI: 10.1007/s40618-014-0109-2  0.01
2014 Herhaus L, Al-Salihi MA, Dingwell KS, Cummins TD, Wasmus L, Vogt J, Ewan R, Bruce D, Macartney T, Weidlich S, Smith JC, Sapkota GP. USP15 targets ALK3/BMPR1A for deubiquitylation to enhance bone morphogenetic protein signalling. Open Biology. 4: 140065. PMID 24850914 DOI: 10.1098/Rsob.140065  0.01
2014 T RR, Smith JC, Krishnan M. Hidden regularity and universal classification of fast side chain motions in proteins. Journal of the American Chemical Society. 136: 8590-605. PMID 24844417 DOI: 10.1021/Ja5024783  0.04
2014 Hansen B, Quick J, Sinkovits E, Smith JC. Glasgow coma scale: how to improve and enhance documentation. Journal of Trauma Nursing : the Official Journal of the Society of Trauma Nurses. 21: 122-4; quiz 125-6. PMID 24828774 DOI: 10.1097/JTN.0000000000000044  0.01
2014 Smith JC, Nielson KA, Woodard JL, Seidenberg M, Durgerian S, Hazlett KE, Figueroa CM, Kandah CC, Kay CD, Matthews MA, Rao SM. Physical activity reduces hippocampal atrophy in elders at genetic risk for Alzheimer's disease. Frontiers in Aging Neuroscience. 6: 61. PMID 24795624 DOI: 10.3389/Fnagi.2014.00061  0.01
2014 Gentsch GE, Smith JC. Investigating physical chromatin associations across the Xenopus genome by chromatin immunoprecipitation. Cold Spring Harbor Protocols. 2014. PMID 24786504 DOI: 10.1101/Pdb.Prot080614  0.01
2014 Hong L, Smolin N, Smith JC. de Gennes narrowing describes the relative motion of protein domains. Physical Review Letters. 112: 158102. PMID 24785076 DOI: 10.1103/Physrevlett.112.158102  0.04
2014 Yvernault BC, Theobald CD, Smith JC, Villalta V, Zald DH, Landman BA. Validating DICOM transcoding with an open multi-format resource. Neuroinformatics. 12: 615-7. PMID 24777387 DOI: 10.1007/S12021-014-9230-9  0.01
2014 Collart C, Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I, Sesay AK, Smith JN, Smith JC, Gilchrist MJ. High-resolution analysis of gene activity during the Xenopus mid-blastula transition. Development (Cambridge, England). 141: 1927-39. PMID 24757007 DOI: 10.1242/Dev.102012  0.01
2014 Huang GO, Engebretsen SR, Smith JC, Wallner CL, Culpepper DJ, Creech JD, Ng CC, Mai AT, Chung CS, Olgin G, Arnold DC, Baldwin DD. Detection of uric acid stones in the ureter using low- and conventional-dose computed tomography. Urology. 84: 571-4. PMID 24746662 DOI: 10.1016/j.urology.2014.02.021  0.01
2014 Shevtsova NA, Büsselberg D, Molkov YI, Bischoff AM, Smith JC, Richter DW, Rybak IA. Effects of glycinergic inhibition failure on respiratory rhythm and pattern generation. Progress in Brain Research. 209: 25-38. PMID 24746041 DOI: 10.1016/B978-0-444-63274-6.00002-3  1
2014 Rybak IA, Molkov YI, Jasinski PE, Shevtsova NA, Smith JC. Rhythmic bursting in the pre-Bötzinger complex: mechanisms and models. Progress in Brain Research. 209: 1-23. PMID 24746040 DOI: 10.1016/B978-0-444-63274-6.00001-1  1
2014 Zhang Q, MacDonald NE, Smith JC, Cai K, Yu H, Li H, Lei C. Severe enterovirus type 71 nervous system infections in children in the Shanghai region of China: clinical manifestations and implications for prevention and care. The Pediatric Infectious Disease Journal. 33: 482-7. PMID 24732390 DOI: 10.1097/INF.0000000000000194  0.01
2014 Ellingson SR, Dakshanamurthy S, Brown M, Smith JC, Baudry J. Accelerating Virtual High-Throughput Ligand Docking: current technology and case study on a petascale supercomputer. Concurrency and Computation : Practice & Experience. 26: 1268-1277. PMID 24729746 DOI: 10.1002/Cpe.3070  0.04
2014 Smith JC, Reber AC, Khanna SN, Castleman AW. Boron substitution in aluminum cluster anions: magic clusters and reactivity with oxygen. The Journal of Physical Chemistry. A. 118: 8485-92. PMID 24725222 DOI: 10.1021/Jp501934T  0.01
2014 Wymore T, Field MJ, Langan P, Smith JC, Parks JM. Hydrolysis of DFP and the nerve agent (S)-sarin by DFPase proceeds along two different reaction pathways: implications for engineering bioscavengers. The Journal of Physical Chemistry. B. 118: 4479-89. PMID 24720808 DOI: 10.1021/Jp410422C  0.01
2014 Smith JC, Smith DC. Hemosuccus pancreaticus. Journal of Vascular and Interventional Radiology : Jvir. 25: 533. PMID 24674212 DOI: 10.1016/j.jvir.2013.11.012  0.01
2014 Ehrlich ES, Chmura JC, Smith JC, Kalu NN, Hayward GS. KSHV RTA abolishes NFκB responsive gene expression during lytic reactivation by targeting vFLIP for degradation via the proteasome. Plos One. 9: e91359. PMID 24614587 DOI: 10.1371/Journal.Pone.0091359  0.01
2014 Srinivas G, Cheng X, Smith JC. Coarse-grain model for natural cellulose fibrils in explicit water. The Journal of Physical Chemistry. B. 118: 3026-34. PMID 24564237 DOI: 10.1021/Jp407953P  0.04
2014 Wasslen KV, Tan le H, Manthorpe JM, Smith JC. Trimethylation enhancement using diazomethane (TrEnDi): rapid on-column quaternization of peptide amino groups via reaction with diazomethane significantly enhances sensitivity in mass spectrometry analyses via a fixed, permanent positive charge. Analytical Chemistry. 86: 3291-9. PMID 24555738 DOI: 10.1021/Ac403349C  1
2014 Vogt J, Dingwell KS, Herhaus L, Gourlay R, Macartney T, Campbell D, Smith JC, Sapkota GP. Protein associated with SMAD1 (PAWS1/FAM83G) is a substrate for type I bone morphogenetic protein receptors and modulates bone morphogenetic protein signalling. Open Biology. 4: 130210. PMID 24554596 DOI: 10.1098/Rsob.130210  0.01
2014 Sugarman MA, Woodard JL, Nielson KA, Smith JC, Seidenberg M, Durgerian S, Norman AL, Hantke NC, Rao SM. Performance variability during a multitrial list-learning task as a predictor of future cognitive decline in healthy elders. Journal of Clinical and Experimental Neuropsychology. 36: 236-43. PMID 24552205 DOI: 10.1080/13803395.2013.877875  0.01
2014 Lightfoot M, Ng C, Engebretsen S, Wallner C, Huang G, Li R, Alsyouf M, Olgin G, Smith JC, Baldwin DD. Analgesic use and complications following upper pole access for percutaneous nephrolithotomy. Journal of Endourology / Endourological Society. 28: 909-14. PMID 24548123 DOI: 10.1089/end.2014.0035  0.01
2014 Richter DW, Smith JC. Respiratory rhythm generation in vivo. Physiology (Bethesda, Md.). 29: 58-71. PMID 24382872 DOI: 10.1152/physiol.00035.2013  1
2014 Corcoran AE, Commons KG, Wu Y, Smith JC, Harris MB, Richerson GB. Dual effects of 5-HT(1a) receptor activation on breathing in neonatal mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 51-9. PMID 24381267 DOI: 10.1523/Jneurosci.0864-13.2014  1
2014 Zhou J, Riccardi D, Beste A, Smith JC, Parks JM. Mercury methylation by HgcA: theory supports carbanion transfer to Hg(II). Inorganic Chemistry. 53: 772-7. PMID 24377658 DOI: 10.1021/Ic401992Y  0.01
2014 Sangha AK, Davison BH, Standaert RF, Davis MF, Smith JC, Parks JM. Chemical factors that control lignin polymerization. The Journal of Physical Chemistry. B. 118: 164-70. PMID 24341896 DOI: 10.1021/Jp411998T  0.01
2014 Siegel EM, Jacobsen PB, Lee JH, Malafa M, Fulp W, Fletcher M, Smith JC, Brown R, Levine R, Cartwright T, Abesada-Terk G, Kim G, Alemany C, Faig D, Sharp P, et al. Florida Initiative for Quality Cancer Care: improvements on colorectal cancer quality of care indicators during a 3-year interval. Journal of the American College of Surgeons. 218: 16-25.e1-4. PMID 24275073 DOI: 10.1016/j.jamcollsurg.2013.09.008  0.01
2014 Morris EE, Smith JC, Farooqui SY, Surís AM. Unseen battles: the recognition, assessment, and treatment issues of men with military sexual trauma (MST). Trauma, Violence & Abuse. 15: 94-101. PMID 24231941 DOI: 10.1177/1524838013511540  0.01
2014 Fabrycky DC, Lissauer JJ, Ragozzine D, Rowe JF, Steffen JH, Agol E, Barclay T, Batalha N, Borucki W, Ciardi DR, Ford EB, Gautier TN, Geary JC, Holman MJ, Jenkins JM, ... Smith JC, et al. Architecture of Kepler's multi-transiting systems. II. New investigations with twice as many candidates Astrophysical Journal. 790. DOI: 10.1088/0004-637X/790/2/146  0.01
2014 Büyüktahtakin IE, Smith JC, Hartman JC, Luo S. Parallel Asset Replacement Problem under Economies of Scale with Multiple Challengers Engineering Economist. DOI: 10.1080/0013791X.2014.898113  0.01
2014 Smith JC. Epilogue Renewable Energy Integration: Practical Management of Variability, Uncertainty, and Flexibility in Power Grids. 455-457. DOI: 10.1016/B978-0-12-407910-6.15001-X  0.01
2014 Hong L, Petridis L, Smith JC. Biomolecular structure and dynamics with neutrons: The view from simulation Israel Journal of Chemistry. DOI: 10.1002/Ijch.201300137  0.04
2013 Smith JC, Denny JC, Chen Q, Nian H, Spickard A, Rosenbloom ST, Miller RA. Lessons learned from developing a drug evidence base to support pharmacovigilance. Applied Clinical Informatics. 4: 596-617. PMID 24454585 DOI: 10.4338/Aci-2013-08-Ra-0062  0.01
2013 Vural D, Hong L, Smith JC, Glyde HR. Long-time mean-square displacements in proteins. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 052706. PMID 24329295 DOI: 10.1103/Physreve.88.052706  0.01
2013 Smith JC, Roux B. Eppur si muove! The 2013 Nobel Prize in Chemistry. Structure (London, England : 1993). 21: 2102-5. PMID 24315458 DOI: 10.1016/J.Str.2013.11.005  0.01
2013 Smith JC, Sanderson SL. Particle retention in suspension-feeding fish after removal of filtration structures. Zoology (Jena, Germany). 116: 348-55. PMID 24211074 DOI: 10.1016/j.zool.2013.08.008  0.01
2013 Yi Z, Lindner B, Prinz JH, Noé F, Smith JC. Dynamic neutron scattering from conformational dynamics. II. Application using molecular dynamics simulation and Markov modeling. The Journal of Chemical Physics. 139: 175102. PMID 24206335 DOI: 10.1063/1.4824071  0.01
2013 Lindner B, Yi Z, Prinz JH, Smith JC, Noé F. Dynamic neutron scattering from conformational dynamics. I. Theory and Markov models. The Journal of Chemical Physics. 139: 175101. PMID 24206334 DOI: 10.1063/1.4824070  0.01
2013 Chen Q, Buolamwini JK, Smith JC, Li A, Xu Q, Cheng X, Wei D. Impact of resistance mutations on inhibitor binding to HIV-1 integrase. Journal of Chemical Information and Modeling. 53: 3297-307. PMID 24205814 DOI: 10.1021/Ci400537N  0.48
2013 Arnold DC, Schroeder G, Smith JC, Wahjudi IN, Heldt JP, Richards GD, Agarwal G, Brisbane WG, Farley DV, Baldwin DD. Comparing radiation exposure between ablative therapies for small renal masses. Journal of Endourology / Endourological Society. 27: 1435-9. PMID 24127631 DOI: 10.1089/end.2013.0209  0.01
2013 Godec A, Smith JC, Merzel F. Soft collective fluctuations governing hydrophobic association. Physical Review Letters. 111: 127801. PMID 24093302 DOI: 10.1103/Physrevlett.111.127801  0.01
2013 Smith BK, Perry CG, Herbst EA, Ritchie IR, Beaudoin MS, Smith JC, Neufer PD, Wright DC, Holloway GP. Submaximal ADP-stimulated respiration is impaired in ZDF rats and recovered by resveratrol. The Journal of Physiology. 591: 6089-101. PMID 24081154 DOI: 10.1113/Jphysiol.2013.259226  1
2013 Gentsch GE, Owens ND, Martin SR, Piccinelli P, Faial T, Trotter MW, Gilchrist MJ, Smith JC. In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency. Cell Reports. 4: 1185-96. PMID 24055059 DOI: 10.1016/J.Celrep.2013.08.012  0.01
2013 Lindner B, Petridis L, Schulz R, Smith JC. Solvent-driven preferential association of lignin with regions of crystalline cellulose in molecular dynamics simulation. Biomacromolecules. 14: 3390-8. PMID 23980921 DOI: 10.1021/Bm400442N  0.01
2013 Devarajan A, Markutsya S, Lamm MH, Cheng X, Smith JC, Baluyut JY, Kholod Y, Gordon MS, Windus TL. Ab initio study of molecular interactions in cellulose Iα. The Journal of Physical Chemistry. B. 117: 10430-43. PMID 23937275 DOI: 10.1021/Jp406266U  0.04
2013 Collart C, Allen GE, Bradshaw CR, Smith JC, Zegerman P. Titration of four replication factors is essential for the Xenopus laevis midblastula transition. Science (New York, N.Y.). 341: 893-6. PMID 23907533 DOI: 10.1126/Science.1241530  0.01
2013 Smith JC, Schäffer MW, Ballard BR, Smoot DT, Herline AJ, Adunyah SE, M'Koma AE. Adenocarcinomas After Prophylactic Surgery For Familial Adenomatous Polyposis. Journal of Cancer Therapy. 4: 260-270. PMID 23875116 DOI: 10.4236/jct.2013.41033  0.01
2013 Miao Y, Hong L, Yi Z, Smith JC. Zaccai neutron resilience and site-specific hydration dynamics in a globular protein. The European Physical Journal. E, Soft Matter. 36: 72. PMID 23852576 DOI: 10.1140/Epje/I2013-13072-5  0.01
2013 Ferreira Ede O, Teixeira FL, Cordeiro F, Araujo Lobo L, Rocha ER, Smith JC, Domingues RM. The Bfp60 surface adhesin is an extracellular matrix and plasminogen protein interacting in Bacteroides fragilis. International Journal of Medical Microbiology : Ijmm. 303: 492-7. PMID 23850366 DOI: 10.1016/j.ijmm.2013.06.007  0.01
2013 Ellingson SR, Smith JC, Baudry J. VinaMPI: facilitating multiple receptor high-throughput virtual docking on high-performance computers. Journal of Computational Chemistry. 34: 2212-21. PMID 23813626 DOI: 10.1002/Jcc.23367  0.01
2013 Houpt TA, Kwon B, Houpt CE, Neth B, Smith JC. Orientation within a high magnetic field determines swimming direction and laterality of c-Fos induction in mice. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 305: R793-803. PMID 23720133 DOI: 10.1152/Ajpregu.00549.2012  0.01
2013 Harvey SA, Sealy I, Kettleborough R, Fenyes F, White R, Stemple D, Smith JC. Identification of the zebrafish maternal and paternal transcriptomes. Development (Cambridge, England). 140: 2703-10. PMID 23720042 DOI: 10.1242/Dev.095091  0.01
2013 Smith JC, Mailman T, MacDonald NE. How to get and get rid of gonorrhea. Advances in Experimental Medicine and Biology. 764: 219-39. PMID 23654071  0.01
2013 Smith JC, Appleton M, MacDonald NE. Building confidence in vaccines. Advances in Experimental Medicine and Biology. 764: 81-98. PMID 23654058  0.01
2013 Mohun T, Adams DJ, Baldock R, Bhattacharya S, Copp AJ, Hemberger M, Houart C, Hurles ME, Robertson E, Smith JC, Weaver T, Weninger W. Deciphering the Mechanisms of Developmental Disorders (DMDD): a new programme for phenotyping embryonic lethal mice. Disease Models & Mechanisms. 6: 562-6. PMID 23519034 DOI: 10.1242/Dmm.011957  0.01
2013 Smith JC, Brooks L, Hoff PM, McWalter G, Dearden S, Morgan SR, Wilson D, Robertson JD, Jürgensmeier JM. KRAS mutations are associated with inferior clinical outcome in patients with metastatic colorectal cancer, but are not predictive for benefit with cediranib. European Journal of Cancer (Oxford, England : 1990). 49: 2424-32. PMID 23510802 DOI: 10.1016/j.ejca.2013.02.023  0.01
2013 Oesch DW, Sanchez DJ, Gallegos AL, Holzman JM, Brennan TJ, Smith JC, Gibson WJ, Farrell TC, Kelly PR. Creation of photonic orbital angular momentum by distributed volume turbulence. Optics Express. 21: 5440-55. PMID 23482115 DOI: 10.1364/OE.21.005440  0.01
2013 Barclay T, Rowe JF, Lissauer JJ, Huber D, Fressin F, Howell SB, Bryson ST, Chaplin WJ, Désert JM, Lopez ED, Marcy GW, Mullally F, Ragozzine D, Torres G, Adams ER, ... ... Smith JC, et al. A sub-Mercury-sized exoplanet. Nature. 494: 452-4. PMID 23426260 DOI: 10.1038/Nature11914  0.01
2013 Glass DC, Krishnan M, Smith JC, Baudry J. Three entropic classes of side chain in a globular protein. The Journal of Physical Chemistry. B. 117: 3127-34. PMID 23421556 DOI: 10.1021/Jp400564Q  0.01
2013 Koizumi H, Koshiya N, Chia JX, Cao F, Nugent J, Zhang R, Smith JC. Structural-functional properties of identified excitatory and inhibitory interneurons within pre-Botzinger complex respiratory microcircuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 2994-3009. PMID 23407957 DOI: 10.1523/JNEUROSCI.4427-12.2013  1
2013 Pronk S, Páll S, Schulz R, Larsson P, Bjelkmar P, Apostolov R, Shirts MR, Smith JC, Kasson PM, van der Spoel D, Hess B, Lindahl E. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics (Oxford, England). 29: 845-54. PMID 23407358 DOI: 10.1093/Bioinformatics/Btt055  0.04
2013 Parks JM, Johs A, Podar M, Bridou R, Hurt RA, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, Palumbo AV, Smith JC, Wall JD, Elias DA, Liang L. The genetic basis for bacterial mercury methylation. Science (New York, N.Y.). 339: 1332-5. PMID 23393089 DOI: 10.1126/Science.1230667  0.04
2013 Hong L, Glass DC, Nickels JD, Perticaroli S, Yi Z, Tyagi M, O'Neill H, Zhang Q, Sokolov AP, Smith JC. Elastic and conformational softness of a globular protein. Physical Review Letters. 110: 028104. PMID 23383942 DOI: 10.1103/Physrevlett.110.028104  0.04
2013 Smith JC, Abdala AP, Borgmann A, Rybak IA, Paton JF. Brainstem respiratory networks: building blocks and microcircuits. Trends in Neurosciences. 36: 152-62. PMID 23254296 DOI: 10.1016/J.Tins.2012.11.004  1
2013 Jasinski PE, Molkov YI, Shevtsova NA, Smith JC, Rybak IA. Sodium and calcium mechanisms of rhythmic bursting in excitatory neural networks of the pre-Bötzinger complex: a computational modelling study. The European Journal of Neuroscience. 37: 212-30. PMID 23121313 DOI: 10.1111/Ejn.12042  1
2012 Lindsey BG, Rybak IA, Smith JC. Computational models and emergent properties of respiratory neural networks. Comprehensive Physiology. 2: 1619-70. PMID 23687564 DOI: 10.1002/Cphy.C110016  1
2012 Miao Y, Yi Z, Cantrell C, Glass DC, Baudry J, Jain N, Smith JC. Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation. Biophysical Journal. 103: 2167-76. PMID 23200050 DOI: 10.1016/J.Bpj.2012.10.013  0.04
2012 Miao Y, Yi Z, Glass DC, Hong L, Tyagi M, Baudry J, Jain N, Smith JC. Temperature-dependent dynamical transitions of different classes of amino acid residue in a globular protein. Journal of the American Chemical Society. 134: 19576-9. PMID 23140218 DOI: 10.1021/Ja3097898  0.04
2012 Guo HB, He F, Gu B, Liang L, Smith JC. Time-dependent density functional theory assessment of UV absorption of benzoic acid derivatives. The Journal of Physical Chemistry. A. 116: 11870-9. PMID 23134517 DOI: 10.1021/Jp3084293  0.01
2012 Nickels JD, O'Neill H, Hong L, Tyagi M, Ehlers G, Weiss KL, Zhang Q, Yi Z, Mamontov E, Smith JC, Sokolov AP. Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP. Biophysical Journal. 103: 1566-75. PMID 23062349 DOI: 10.1016/J.Bpj.2012.08.046  0.04
2012 Daidone I, Iacobucci C, McLain SE, Smith JC. Alteration of water structure by peptide clusters revealed by neutron scattering in the small-angle region (below 1 Å(-1)). Biophysical Journal. 103: 1518-24. PMID 23062344 DOI: 10.1016/J.Bpj.2012.08.010  0.01
2012 Hong L, Cheng X, Glass DC, Smith JC. Surface hydration amplifies single-well protein atom diffusion propagating into the macromolecular core. Physical Review Letters. 108: 238102. PMID 23003993 DOI: 10.1103/Physrevlett.108.238102  0.04
2012 Tschaplinski TJ, Standaert RF, Engle NL, Martin MZ, Sangha AK, Parks JM, Smith JC, Samuel R, Jiang N, Pu Y, Ragauskas AJ, Hamilton CY, Fu C, Wang ZY, Davison BH, et al. Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog. Biotechnology For Biofuels. 5: 71. PMID 22998926 DOI: 10.1186/1754-6834-5-71  0.04
2012 Ulmschneider JP, Smith JC, Ulmschneider MB, Ulrich AS, Strandberg E. Reorientation and dimerization of the membrane-bound antimicrobial peptide PGLa from microsecond all-atom MD simulations. Biophysical Journal. 103: 472-82. PMID 22947863 DOI: 10.1016/J.Bpj.2012.06.040  0.04
2012 Glass DC, Moritsugu K, Cheng X, Smith JC. REACH coarse-grained simulation of a cellulose fiber. Biomacromolecules. 13: 2634-44. PMID 22937726 DOI: 10.1021/Bm300460F  0.04
2012 Smith BK, Perry CG, Koves TR, Wright DC, Smith JC, Neufer PD, Muoio DM, Holloway GP. Identification of a novel malonyl-CoA IC(50) for CPT-I: implications for predicting in vivo fatty acid oxidation rates. The Biochemical Journal. 448: 13-20. PMID 22928974 DOI: 10.1042/Bj20121110  1
2012 Callery EM, Park CY, Xu X, Zhu H, Smith JC, Thomsen GH. Eps15R is required for bone morphogenetic protein signalling and differentially compartmentalizes with Smad proteins. Open Biology. 2: 120060. PMID 22724065 DOI: 10.1098/Rsob.120060  0.01
2012 Bere?niak T, Jäschke A, Smith JC, Imhof P. Stereoselection in the Diels-Alderase ribozyme: a molecular dynamics study. Journal of Computational Chemistry. 33: 1603-14. PMID 22549366 DOI: 10.1002/Jcc.22993  0.01
2012 Evans AL, Faial T, Gilchrist MJ, Down T, Vallier L, Pedersen RA, Wardle FC, Smith JC. Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells. Plos One. 7: e33346. PMID 22479388 DOI: 10.1371/Journal.Pone.0033346  0.01
2012 Sangha AK, Parks JM, Standaert RF, Ziebell A, Davis M, Smith JC. Radical coupling reactions in lignin synthesis: a density functional theory study. The Journal of Physical Chemistry. B. 116: 4760-8. PMID 22475051 DOI: 10.1021/Jp2122449  0.04
2012 Yi Z, Miao Y, Baudry J, Jain N, Smith JC. Derivation of mean-square displacements for protein dynamics from elastic incoherent neutron scattering. The Journal of Physical Chemistry. B. 116: 5028-36. PMID 22471396 DOI: 10.1021/Jp2102868  0.04
2012 Smolin N, Biehl R, Kneller GR, Richter D, Smith JC. Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation. Biophysical Journal. 102: 1108-17. PMID 22404933 DOI: 10.1016/J.Bpj.2012.01.002  0.01
2012 Krishnan M, Smith JC. Reconstruction of protein side-chain conformational free energy surfaces from NMR-derived methyl axis order parameters. The Journal of Physical Chemistry. B. 116: 4124-33. PMID 22401582 DOI: 10.1021/Jp2104853  0.01
2012 Voltz K, Trylska J, Calimet N, Smith JC, Langowski J. Unwrapping of nucleosomal DNA ends: a multiscale molecular dynamics study. Biophysical Journal. 102: 849-58. PMID 22385856 DOI: 10.1016/J.Bpj.2011.11.4028  0.04
2012 Pool R, Heringa J, Hoefling M, Schulz R, Smith JC, Feenstra KA. Enabling grand-canonical Monte Carlo: extending the flexibility of GROMACS through the GromPy python interface module. Journal of Computational Chemistry. 33: 1207-14. PMID 22370965 DOI: 10.1002/Jcc.22947  0.04
2012 Koziol AG, Marquez BK, Huebsch MP, Smith JC, Altosaar I. The starch granule associated proteomes of commercially purified starch reference materials from rice and maize. Journal of Proteomics. 75: 993-1003. PMID 22062158 DOI: 10.1016/J.Jprot.2011.10.019  1
2011 Godec A, Smith JC, Merzel F. Increase of both order and disorder in the first hydration shell with increasing solute polarity. Physical Review Letters. 107: 267801. PMID 22243182 DOI: 10.1103/Physrevlett.107.267801  0.01
2011 Biswas M, Voltz K, Smith JC, Langowski J. Role of histone tails in structural stability of the nucleosome. Plos Computational Biology. 7: e1002279. PMID 22207822 DOI: 10.1371/Journal.Pcbi.1002279  0.01
2011 Mostofian B, Smith JC, Cheng X. The solvation structures of cellulose microfibrils in ionic liquids. Interdisciplinary Sciences, Computational Life Sciences. 3: 308-20. PMID 22179764 DOI: 10.1007/S12539-011-0111-8  0.04
2011 Hong L, Smolin N, Lindner B, Sokolov AP, Smith JC. Three classes of motion in the dynamic neutron-scattering susceptibility of a globular protein. Physical Review Letters. 107: 148102. PMID 22107237 DOI: 10.1103/Physrevlett.107.148102  0.01
2011 Petridis L, Schulz R, Smith JC. Simulation analysis of the temperature dependence of lignin structure and dynamics. Journal of the American Chemical Society. 133: 20277-87. PMID 22035184 DOI: 10.1021/Ja206839U  0.01
2011 Hu X, Elghobashi-Meinhardt N, Gembris D, Smith JC. Response of water to electric fields at temperatures below the glass transition: a molecular dynamics analysis. The Journal of Chemical Physics. 135: 134507. PMID 21992324 DOI: 10.1063/1.3643077  0.01
2011 Thukral L, Daidone I, Smith JC. Structured pathway across the transition state for peptide folding revealed by molecular dynamics simulations. Plos Computational Biology. 7: e1002137. PMID 21931542 DOI: 10.1371/Journal.Pcbi.1002137  0.01
2011 Shevtsova NA, Manzke T, Molkov YI, Bischoff A, Smith JC, Rybak IA, Richter DW. Computational modelling of 5-HT receptor-mediated reorganization of the brainstem respiratory network. The European Journal of Neuroscience. 34: 1276-91. PMID 21899601 DOI: 10.1111/J.1460-9568.2011.07825.X  1
2011 Klein HC, Cheng X, Smith JC, Shen T. Transfer matrix approach to the hydrogen-bonding in cellulose Iα fibrils describes the recalcitrance to thermal deconstruction. The Journal of Chemical Physics. 135: 085106. PMID 21895224 DOI: 10.1063/1.3626274  0.01
2011 Johs A, Harwood IM, Parks JM, Nauss RE, Smith JC, Liang L, Miller SM. Structural characterization of intramolecular Hg(2+) transfer between flexibly linked domains of mercuric ion reductase. Journal of Molecular Biology. 413: 639-56. PMID 21893070 DOI: 10.1016/J.Jmb.2011.08.042  0.01
2011 Ulmschneider JP, Smith JC, White SH, Ulmschneider MB. In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions. Journal of the American Chemical Society. 133: 15487-95. PMID 21861483 DOI: 10.1021/Ja204042F  0.01
2011 Zahran M, Berezniak T, Imhof P, Smith JC. Role of magnesium ions in DNA recognition by the EcoRV restriction endonuclease. Febs Letters. 585: 2739-43. PMID 21835176 DOI: 10.1016/J.Febslet.2011.07.036  0.01
2011 Brown SD, Guss AM, Karpinets TV, Parks JM, Smolin N, Yang S, Land ML, Klingeman DM, Bhandiwad A, Rodriguez M, Raman B, Shao X, Mielenz JR, Smith JC, Keller M, et al. Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum. Proceedings of the National Academy of Sciences of the United States of America. 108: 13752-7. PMID 21825121 DOI: 10.1073/Pnas.1102444108  0.01
2011 Bernardo AS, Faial T, Gardner L, Niakan KK, Ortmann D, Senner CE, Callery EM, Trotter MW, Hemberger M, Smith JC, Bardwell L, Moffett A, Pedersen RA. BRACHYURY and CDX2 mediate BMP-induced differentiation of human and mouse pluripotent stem cells into embryonic and extraembryonic lineages. Cell Stem Cell. 9: 144-55. PMID 21816365 DOI: 10.1016/J.Stem.2011.06.015  0.01
2011 Petridis L, Pingali SV, Urban V, Heller WT, O'Neill HM, Foston M, Ragauskas A, Smith JC. Self-similar multiscale structure of lignin revealed by neutron scattering and molecular dynamics simulation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 061911. PMID 21797407 DOI: 10.1103/Physreve.83.061911  0.01
2011 Collart C, Christov CP, Smith JC, Krude T. The midblastula transition defines the onset of Y RNA-dependent DNA replication in Xenopus laevis. Molecular and Cellular Biology. 31: 3857-70. PMID 21791613 DOI: 10.1128/Mcb.05411-11  0.01
2011 Pingali SV, O'Neill HM, McGaughey J, Urban VS, Rempe CS, Petridis L, Smith JC, Evans BR, Heller WT. Small angle neutron scattering reveals pH-dependent conformational changes in Trichoderma reesei cellobiohydrolase I: implications for enzymatic activity. The Journal of Biological Chemistry. 286: 32801-9. PMID 21784865 DOI: 10.1074/Jbc.M111.263004  0.01
2011 Prinz JH, Chodera JD, Pande VS, Swope WC, Smith JC, Noé F. Optimal use of data in parallel tempering simulations for the construction of discrete-state Markov models of biomolecular dynamics. The Journal of Chemical Physics. 134: 244108. PMID 21721613 DOI: 10.1063/1.3592153  0.01
2011 Daidone I, Di Nola A, Smith JC. Molecular origin of Gerstmann-Sträussler-Scheinker syndrome: insight from computer simulation of an amyloidogenic prion peptide. Biophysical Journal. 100: 3000-7. PMID 21689534 DOI: 10.1016/J.Bpj.2011.04.053  0.01
2011 Splettstoesser T, Holmes KC, Noé F, Smith JC. Structural modeling and molecular dynamics simulation of the actin filament. Proteins. 79: 2033-43. PMID 21557314 DOI: 10.1002/Prot.23017  0.01
2011 Balog E, Perahia D, Smith JC, Merzel F. Vibrational softening of a protein on ligand binding. The Journal of Physical Chemistry. B. 115: 6811-7. PMID 21553905 DOI: 10.1021/Jp108493G  0.01
2011 Neusius T, Daidone I, Sokolov IM, Smith JC. Configurational subdiffusion of peptides: a network study. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 021902. PMID 21405858 DOI: 10.1103/Physreve.83.021902  0.01
2011 Collignon B, Schulz R, Smith JC, Baudry J. Task-parallel message passing interface implementation of Autodock4 for docking of very large databases of compounds using high-performance super-computers. Journal of Computational Chemistry. 32: 1202-9. PMID 21387347 DOI: 10.1002/Jcc.21696  0.01
2011 Noé F, Doose S, Daidone I, Löllmann M, Sauer M, Chodera JD, Smith JC. Dynamical fingerprints for probing individual relaxation processes in biomolecular dynamics with simulations and kinetic experiments. Proceedings of the National Academy of Sciences of the United States of America. 108: 4822-7. PMID 21368203 DOI: 10.1073/Pnas.1004646108  0.01
2011 Bondar AN, Fischer S, Smith JC. Water pathways in the bacteriorhodopsin proton pump. The Journal of Membrane Biology. 239: 73-84. PMID 21113780 DOI: 10.1007/S00232-010-9329-3  0.01
2011 Rana AA, Roper SJ, Palmer EA, Smith JC. Loss of Xenopus tropicalis EMSY causes impairment of gastrulation and upregulation of p53. New Biotechnology. 28: 334-41. PMID 21056705 DOI: 10.1016/J.Nbt.2010.10.010  0.01
2011 Rubin JE, Bacak BJ, Molkov YI, Shevtsova NA, Smith JC, Rybak IA. Interacting oscillations in neural control of breathing: modeling and qualitative analysis. Journal of Computational Neuroscience. 30: 607-32. PMID 20927576 DOI: 10.1007/S10827-010-0281-0  1
2010 Saharay M, Guo H, Smith JC. Catalytic mechanism of cellulose degradation by a cellobiohydrolase, CelS. Plos One. 5: e12947. PMID 20967294 DOI: 10.1371/Journal.Pone.0012947  0.01
2010 Lopez M, Kurkal-Siebert V, Dunn RV, Tehei M, Finney JL, Smith JC, Daniel RM. Activity and dynamics of an enzyme, pig liver esterase, in near-anhydrous conditions. Biophysical Journal. 99: L62-4. PMID 20959076 DOI: 10.1016/J.Bpj.2010.07.066  0.01
2010 Molkov YI, Abdala AP, Bacak BJ, Smith JC, Paton JF, Rybak IA. Late-expiratory activity: emergence and interactions with the respiratory CpG. Journal of Neurophysiology. 104: 2713-29. PMID 20884764 DOI: 10.1152/Jn.00334.2010  1
2010 Marina N, Abdala AP, Trapp S, Li A, Nattie EE, Hewinson J, Smith JC, Paton JF, Gourine AV. Essential role of Phox2b-expressing ventrolateral brainstem neurons in the chemosensory control of inspiration and expiration. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12466-73. PMID 20844141 DOI: 10.1523/Jneurosci.3141-10.2010  1
2010 Milescu LS, Yamanishi T, Ptak K, Smith JC. Kinetic properties and functional dynamics of sodium channels during repetitive spiking in a slow pacemaker neuron. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12113-27. PMID 20826674 DOI: 10.1523/Jneurosci.0445-10.2010  1
2010 Bere?niak T, Zahran M, Imhof P, Jäschke A, Smith JC. Magnesium-dependent active-site conformational selection in the Diels-Alderase ribozyme. Journal of the American Chemical Society. 132: 12587-96. PMID 20722413 DOI: 10.1021/Ja101370E  0.04
2010 Cannon JE, Upton PD, Smith JC, Morrell NW. Intersegmental vessel formation in zebrafish: requirement for VEGF but not BMP signalling revealed by selective and non-selective BMP antagonists. British Journal of Pharmacology. 161: 140-9. PMID 20718746 DOI: 10.1111/J.1476-5381.2010.00871.X  0.01
2010 Wall ML, Wheeler HL, Smith J, Figeys D, Altosaar I. Mass spectrometric analysis reveals remnants of host-pathogen molecular interactions at the starch granule surface in wheat endosperm. Phytopathology. 100: 848-54. PMID 20701481 DOI: 10.1094/Phyto-100-9-0848  1
2010 Xu J, Smith JC. Probing the mechanism of cellulosome attachment to the Clostridium thermocellum cell surface: computer simulation of the Type II cohesin-dockerin complex and its variants. Protein Engineering, Design & Selection : Peds. 23: 759-68. PMID 20682763 DOI: 10.1093/Protein/Gzq049  0.01
2010 Zahran M, Daidone I, Smith JC, Imhof P. Mechanism of DNA recognition by the restriction enzyme EcoRV. Journal of Molecular Biology. 401: 415-32. PMID 20600128 DOI: 10.1016/J.Jmb.2010.06.026  0.01
2010 Ulmschneider MB, Smith JC, Ulmschneider JP. Peptide partitioning properties from direct insertion studies. Biophysical Journal. 98: L60-2. PMID 20550886 DOI: 10.1016/J.Bpj.2010.03.043  0.01
2010 Milescu LS, Bean BP, Smith JC. Isolation of somatic Na+ currents by selective inactivation of axonal channels with a voltage prepulse. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 7740-8. PMID 20519549 DOI: 10.1523/Jneurosci.6136-09.2010  1
2010 Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, Guo HB, Smith JC, Brown SD. Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 107: 10395-400. PMID 20484677 DOI: 10.1073/Pnas.0914506107  0.04
2010 Koizumi H, Smerin SE, Yamanishi T, Moorjani BR, Zhang R, Smith JC. TASK channels contribute to the K+-dominated leak current regulating respiratory rhythm generation in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 4273-84. PMID 20335463 DOI: 10.1523/JNEUROSCI.4017-09.2010  1
2010 Guo HB, Johs A, Parks JM, Olliff L, Miller SM, Summers AO, Liang L, Smith JC. Structure and conformational dynamics of the metalloregulator MerR upon binding of Hg(II). Journal of Molecular Biology. 398: 555-68. PMID 20303978 DOI: 10.1016/J.Jmb.2010.03.020  0.04
2010 Harvey SA, Tümpel S, Dubrulle J, Schier AF, Smith JC. no tail integrates two modes of mesoderm induction. Development (Cambridge, England). 137: 1127-35. PMID 20215349 DOI: 10.1242/Dev.046318  0.01
2010 Ulmschneider MB, Doux JP, Killian JA, Smith JC, Ulmschneider JP. Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides. Journal of the American Chemical Society. 132: 3452-60. PMID 20163187 DOI: 10.1021/Ja909347X  0.04
2010 Labriola JM, daCosta CJ, Wang S, Figeys D, Smith JC, Sturgeon RM, Baenziger JE. Phospholipase C activity affinity purifies with the Torpedo nicotinic acetylcholine receptor. The Journal of Biological Chemistry. 285: 10337-43. PMID 20133947 DOI: 10.1074/Jbc.M109.071993  1
2010 Daidone I, Neuweiler H, Doose S, Sauer M, Smith JC. Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains. Plos Computational Biology. 6: e1000645. PMID 20098498 DOI: 10.1371/Journal.Pcbi.1000645  0.01
2010 Callery EM, Thomsen GH, Smith JC. A divergent Tbx6-related gene and Tbx6 are both required for neural crest and intermediate mesoderm development in Xenopus. Developmental Biology. 340: 75-87. PMID 20083100 DOI: 10.1016/J.Ydbio.2010.01.013  0.01
2010 Moritsugu K, Njunda BM, Smith JC. Theory and normal-mode analysis of change in protein vibrational dynamics on ligand binding. The Journal of Physical Chemistry. B. 114: 1479-85. PMID 20043649 DOI: 10.1021/Jp909677P  0.01
2010 Ben-Tal A, Smith JC. Control of breathing: two types of delays studied in an integrated model of the respiratory system. Respiratory Physiology & Neurobiology. 170: 103-12. PMID 19853063 DOI: 10.1016/j.resp.2009.10.008  1
2010 Keller L, Markiewicz T, Smith J, Assmann R, Bracco C, Weiler T. Comparison of carbon and HI-Z primary collimators for the LHC phase II collimation system Ipac 2010 - 1st International Particle Accelerator Conference. 1707-1709.  1
2010 Smith JC, Keller L, Lundgren S, Markiewicz T, Young A. BPM design and impedance considerations for a rotatable collimator for the LHC collimation upgrade Ipac 2010 - 1st International Particle Accelerator Conference. 1704-1706.  1
2010 Xiao L, Lundgren S, Markiewicz T, Ng C, Smith J. Longitudinal wakefield study in SLAC rotatable collimator design for the LHC phase II upgrade Ipac 2010 - 1st International Particle Accelerator Conference. 1898-1900.  1
2010 Smith JC, Keller L, Lundgren S, Markiewicz T. Construction and bench testing of a rotatable collimator for the LHC collimation upgrade Ipac 2010 - 1st International Particle Accelerator Conference. 1701-1703.  1
2009 Smith JC. Forming and interpreting gradients in the early Xenopus embryo. Cold Spring Harbor Perspectives in Biology. 1: a002477. PMID 20066079 DOI: 10.1101/Cshperspect.A002477  0.01
2009 Thukral L, Smith JC, Daidone I. Common folding mechanism of a beta-hairpin peptide via non-native turn formation revealed by unbiased molecular dynamics simulations. Journal of the American Chemical Society. 131: 18147-52. PMID 19919102 DOI: 10.1021/Ja9064365  0.01
2009 Xu Q, Chu YZ, Guo HB, Smith JC, Guo H. Energy triplets for writing epigenetic marks: insights from QM/MM free-energy simulations of protein lysine methyltransferases. Chemistry (Weinheim An Der Bergstrasse, Germany). 15: 12596-9. PMID 19882600 DOI: 10.1002/Chem.200902297  0.01
2009 Chepelev NL, Bennitz JD, Wright JS, Smith JC, Willmore WG. Oxidative modification of citrate synthase by peroxyl radicals and protection with novel antioxidants. Journal of Enzyme Inhibition and Medicinal Chemistry. 24: 1319-31. PMID 19795928 DOI: 10.3109/14756360902852586  1
2009 Collart C, Ramis JM, Down TA, Smith JC. Smicl is required for phosphorylation of RNA polymerase II and affects 3'-end processing of RNA at the midblastula transition in Xenopus. Development (Cambridge, England). 136: 3451-61. PMID 19783735 DOI: 10.1242/Dev.027714  0.01
2009 Parks JM, Guo H, Momany C, Liang L, Miller SM, Summers AO, Smith JC. Mechanism of Hg-C protonolysis in the organomercurial lyase MerB. Journal of the American Chemical Society. 131: 13278-85. PMID 19719173 DOI: 10.1021/Ja9016123  0.04
2009 Hodges MR, Wehner M, Aungst J, Smith JC, Richerson GB. Transgenic mice lacking serotonin neurons have severe apnea and high mortality during development. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 10341-9. PMID 19692608 DOI: 10.1523/Jneurosci.1963-09.2009  1
2009 Moritsugu K, Kurkal-Siebert V, Smith JC. REACH coarse-grained normal mode analysis of protein dimer interaction dynamics. Biophysical Journal. 97: 1158-67. PMID 19686664 DOI: 10.1016/J.Bpj.2009.05.015  0.01
2009 Imhof P, Fischer S, Smith JC. Catalytic mechanism of DNA backbone cleavage by the restriction enzyme EcoRV: a quantum mechanical/molecular mechanical analysis. Biochemistry. 48: 9061-75. PMID 19678693 DOI: 10.1021/Bi900585M  0.01
2009 Neusius T, Sokolov IM, Smith JC. Subdiffusion in time-averaged, confined random walks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 011109. PMID 19658655 DOI: 10.1103/Physreve.80.011109  0.01
2009 Smith JC, Abdala AP, Rybak IA, Paton JF. Structural and functional architecture of respiratory networks in the mammalian brainstem. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2577-87. PMID 19651658 DOI: 10.1098/Rstb.2009.0081  1
2009 Krishnan M, Smith JC. Response of small-scale, methyl rotors to protein-ligand association: a simulation analysis of calmodulin-peptide binding. Journal of the American Chemical Society. 131: 10083-91. PMID 19621963 DOI: 10.1021/Ja901276N  0.01
2009 Hagemann AI, Xu X, Nentwich O, Hyvonen M, Smith JC. Rab5-mediated endocytosis of activin is not required for gene activation or long-range signalling in Xenopus. Development (Cambridge, England). 136: 2803-13. PMID 19605501 DOI: 10.1242/Dev.034124  0.01
2009 Abdala AP, Rybak IA, Smith JC, Zoccal DB, Machado BH, St-John WM, Paton JF. Multiple pontomedullary mechanisms of respiratory rhythmogenesis. Respiratory Physiology & Neurobiology. 168: 19-25. PMID 19540366 DOI: 10.1016/J.Resp.2009.06.011  1
2009 Abdala AP, Rybak IA, Smith JC, Paton JF. Abdominal expiratory activity in the rat brainstem-spinal cord in situ: patterns, origins and implications for respiratory rhythm generation. The Journal of Physiology. 587: 3539-59. PMID 19491247 DOI: 10.1113/Jphysiol.2008.167502  1
2009 Harvey SA, Smith JC. Visualisation and quantification of morphogen gradient formation in the zebrafish. Plos Biology. 7: e1000101. PMID 19419239 DOI: 10.1371/Journal.Pbio.1000101  0.01
2009 Phatak P, Frähmcke JS, Wanko M, Hoffmann M, Strodel P, Smith JC, Suhai S, Bondar AN, Elstner M. Long-distance proton transfer with a break in the bacteriorhodopsin active site. Journal of the American Chemical Society. 131: 7064-78. PMID 19405533 DOI: 10.1021/Ja809767V  0.01
2009 Xu J, Crowley MF, Smith JC. Building a foundation for structure-based cellulosome design for cellulosic ethanol: Insight into cohesin-dockerin complexation from computer simulation. Protein Science : a Publication of the Protein Society. 18: 949-59. PMID 19384997 DOI: 10.1002/Pro.105  0.04
2009 Ptak K, Yamanishi T, Aungst J, Milescu LS, Zhang R, Richerson GB, Smith JC. Raphé neurons stimulate respiratory circuit activity by multiple mechanisms via endogenously released serotonin and substance P. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 3720-37. PMID 19321769 DOI: 10.1523/Jneurosci.5271-08.2009  1
2009 Morley RH, Lachani K, Keefe D, Gilchrist MJ, Flicek P, Smith JC, Wardle FC. A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation. Proceedings of the National Academy of Sciences of the United States of America. 106: 3829-34. PMID 19225104 DOI: 10.1073/Pnas.0808382106  0.01
2009 Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA. Multiple rhythmic states in a model of the respiratory central pattern generator. Journal of Neurophysiology. 101: 2146-65. PMID 19193773 DOI: 10.1152/Jn.90958.2008  1
2009 Schulz R, Krishnan M, Daidone I, Smith JC. Instantaneous normal modes and the protein glass transition. Biophysical Journal. 96: 476-84. PMID 19167298 DOI: 10.1016/J.Bpj.2008.10.007  0.01
2009 Garnett AT, Han TM, Gilchrist MJ, Smith JC, Eisen MB, Wardle FC, Amacher SL. Identification of direct T-box target genes in the developing zebrafish mesoderm. Development (Cambridge, England). 136: 749-60. PMID 19158186 DOI: 10.1242/Dev.024703  0.01
2009 Splettstoesser T, Noé F, Oda T, Smith JC. Nucleotide-dependence of G-actin conformation from multiple molecular dynamics simulations and observation of a putatively polymerization-competent superclosed state. Proteins. 76: 353-64. PMID 19156817 DOI: 10.1002/Prot.22350  0.01
2009 Argasinska J, Rana AA, Gilchrist MJ, Lachani K, Young A, Smith JC. Loss of REEP4 causes paralysis of the Xenopus embryo. The International Journal of Developmental Biology. 53: 37-43. PMID 19123125 DOI: 10.1387/Ijdb.072542Ja  0.01
2009 Bhattacharya S, Shcherbik N, Vasilescu J, Smith JC, Figeys D, Haines DS. Identification of lysines within membrane-anchored Mga2p120 that are targets of Rsp5p ubiquitination and mediate mobilization of tethered Mga2p90. Journal of Molecular Biology. 385: 718-25. PMID 19061897 DOI: 10.1016/J.Jmb.2008.11.018  1
2009 Petridis L, Smith JC. A molecular mechanics force field for lignin. Journal of Computational Chemistry. 30: 457-67. PMID 18677707 DOI: 10.1002/Jcc.21075  0.01
2008 Jones CM, Smith JC. Wholemount in situ hybridization to Xenopus embryos. Methods in Molecular Biology (Clifton, N.J.). 461: 697-702. PMID 19030832 DOI: 10.1007/978-1-60327-483-8_47  0.01
2008 Jones CM, Smith JC. Mesoderm induction assays. Methods in Molecular Biology (Clifton, N.J.). 461: 395-404. PMID 19030814 DOI: 10.1007/978-1-60327-483-8_29  0.01
2008 Jones CM, Smith JC. An overview of Xenopus development. Methods in Molecular Biology (Clifton, N.J.). 461: 385-94. PMID 19030813 DOI: 10.1007/978-1-60327-483-8_28  0.01
2008 Berringer RA, Smith JC, Smith JC, Brokaw DK, Oestreich GL. Utilization and outcomes of Missouri Medicaid's EHR: CyberAccess. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1139. PMID 18999173  0.01
2008 Bondar AN, Baudry J, Suhai S, Fischer S, Smith JC. Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions. The Journal of Physical Chemistry. B. 112: 14729-41. PMID 18973373 DOI: 10.1021/Jp801916F  0.01
2008 McLain SE, Soper AK, Daidone I, Smith JC, Watts A. Charge-based interactions between peptides observed as the dominant force for association in aqueous solution. Angewandte Chemie (International Ed. in English). 47: 9059-62. PMID 18937237 DOI: 10.1002/Anie.200802679  0.04
2008 Gilchrist MJ, Christensen MB, Harland R, Pollet N, Smith JC, Ueno N, Papalopulu N. Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data. Bmc Bioinformatics. 9: 442. PMID 18928517 DOI: 10.1186/1471-2105-9-442  0.01
2008 Becker V, Sengupta D, Ketteler R, Ullmann GM, Smith JC, Klingmüller U. Packing density of the erythropoietin receptor transmembrane domain correlates with amplification of biological responses. Biochemistry. 47: 11771-82. PMID 18855427 DOI: 10.1021/Bi801425E  0.01
2008 Nutt DR, Smith JC. Dual function of the hydration layer around an antifreeze protein revealed by atomistic molecular dynamics simulations. Journal of the American Chemical Society. 130: 13066-73. PMID 18774821 DOI: 10.1021/Ja8034027  0.01
2008 Noé F, Daidone I, Smith JC, di Nola A, Amadei A. Solvent electrostriction-driven peptide folding revealed by quasi-Gaussian entropy theory and molecular dynamics simulation. The Journal of Physical Chemistry. B. 112: 11155-63. PMID 18698708 DOI: 10.1021/Jp801391T  0.01
2008 Sengupta D, Smith JC, Ullmann GM. Partitioning of amino-acid analogues in a five-slab membrane model. Biochimica Et Biophysica Acta. 1778: 2234-43. PMID 18640092 DOI: 10.1016/J.Bbamem.2008.06.014  0.01
2008 Colas A, Cartry J, Buisson I, Umbhauer M, Smith JC, Riou JF. Mix.1/2-dependent control of FGF availability during gastrulation is essential for pronephros development in Xenopus. Developmental Biology. 320: 351-65. PMID 18614163 DOI: 10.1016/J.Ydbio.2008.05.547  0.01
2008 Saka Y, Hagemann AI, Smith JC. Visualizing protein interactions by bimolecular fluorescence complementation in Xenopus. Methods (San Diego, Calif.). 45: 192-5. PMID 18586100 DOI: 10.1016/J.Ymeth.2008.06.005  0.01
2008 von Hofsten J, Elworthy S, Gilchrist MJ, Smith JC, Wardle FC, Ingham PW. Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo. Embo Reports. 9: 683-9. PMID 18535625 DOI: 10.1038/Embor.2008.73  0.01
2008 Neusius T, Daidone I, Sokolov IM, Smith JC. Subdiffusion in peptides originates from the fractal-like structure of configuration space. Physical Review Letters. 100: 188103. PMID 18518418 DOI: 10.1103/Physrevlett.100.188103  0.01
2008 Kurkal-Siebert V, Agarwal R, Smith JC. Hydration-dependent dynamical transition in protein: protein interactions at approximately 240 K. Physical Review Letters. 100: 138102. PMID 18518001 DOI: 10.1103/Physrevlett.100.138102  0.01
2008 Smith JC, Figeys D. Recent developments in mass spectrometry-based quantitative phosphoproteomics. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 86: 137-48. PMID 18443627 DOI: 10.1139/O08-007  1
2008 Milescu LS, Yamanishi T, Ptak K, Mogri MZ, Smith JC. Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp. Biophysical Journal. 95: 66-87. PMID 18375511 DOI: 10.1529/biophysj.107.118190  1
2008 Koizumi H, Wilson CG, Wong S, Yamanishi T, Koshiya N, Smith JC. Functional imaging, spatial reconstruction, and biophysical analysis of a respiratory motor circuit isolated in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 2353-65. PMID 18322082 DOI: 10.1523/Jneurosci.3553-07.2008  1
2008 Koizumi H, Smith JC. Persistent Na+ and K+-dominated leak currents contribute to respiratory rhythm generation in the pre-Bötzinger complex in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 1773-85. PMID 18272697 DOI: 10.1523/JNEUROSCI.3916-07.2008  1
2008 Ben-Tal A, Smith JC. A model for control of breathing in mammals: coupling neural dynamics to peripheral gas exchange and transport. Journal of Theoretical Biology. 251: 480-97. PMID 18262570 DOI: 10.1016/j.jtbi.2007.12.018  1
2008 Vasilescu J, Smith JC, Zweitzig DR, Denis NJ, Haines DS, Figeys D. Systematic determination of ion score cutoffs based on calculated false positive rates: application for identifying ubiquitinated proteins by tandem mass spectrometry. Journal of Mass Spectrometry : Jms. 43: 296-304. PMID 17957819 DOI: 10.1002/Jms.1297  1
2008 Smith JC, Doyle E, Keller L, Lundgren S, Markiewicz TW, Lari L. Design of a rotatable copper collimator for the LHC phase II collimation upgrade Epac 2008 - Contributions to the Proceedings. 289-291.  1
2008 Smith JC, Bane K, Doyle E, Keller L, Lundgren S, Markiewicz T, Ng CK, Xiao L. Bench-top impedance measurements for a rotatable copper collimator for the LHC Phase II collimation upgrade Epac 2008 - Contributions to the Proceedings. 1703-1705.  1
2008 Lari L, Bracco C, Assmann R, Brugger M, Cerutti F, Ferrari A, Mauri M, Redaelli S, Sarchiapone L, Vlachoudis V, Weiler T, Doyle E, Keller L, Lundgren S, Markiewicz T, ... Smith J, et al. Evaluation of beam losses and energy depositions for a possible Phase II design for LHC collimation Epac 2008 - Contributions to the Proceedings. 2686-2688.  1
2008 Pei S, Servi A, Raubenheimer TO, Smith JC. Simulation of wakefield effect in ILC IR chamber Epac 2008 - Contributions to the Proceedings. 2743-2745.  1
2008 Smith JC, Doyle E, Keller L, Lundgren S, Markiewicz TW. Mechanical and thermal prototype testing for a rotatable collimator for the LHC phase iicollimation upgrade Epac 2008 - Contributions to the Proceedings. 286-288.  1
2008 Pei S, Adolphsen C, Li Z, Bane K, Smith J. TTF HOM data analysis with curve fitting method Epac 2008 - Contributions to the Proceedings. 1227-1229.  1
2008 Lari L, Bracco C, Assmann R, Bertarelli A, Brugger M, Cerutti F, Dallocchio A, Ferrari A, Mauri M, Roesler S, Sarchiapone L, Vlachoudis V, Doyle E, Keller L, Lundgren S, ... ... Smith J, et al. Preliminary exploratory study of different Phase II collimators Epac 2008 - Contributions to the Proceedings. 2683-2685.  1
2007 Nutt DR, Smith JC. Molecular Dynamics Simulations of Proteins:  Can the Explicit Water Model Be Varied? Journal of Chemical Theory and Computation. 3: 1550-60. PMID 26633225 DOI: 10.1021/Ct700053U  0.01
2007 Whitehead SN, Hou W, Ethier M, Smith JC, Bourgeois A, Denis R, Bennett SA, Figeys D. Identification and quantitation of changes in the platelet activating factor family of glycerophospholipids over the course of neuronal differentiation by high-performance liquid chromatography electrospray ionization tandem mass spectrometry. Analytical Chemistry. 79: 8539-48. PMID 17949058 DOI: 10.1021/Ac0712291  1
2007 Rybak IA, Abdala AP, Markin SN, Paton JF, Smith JC. Spatial organization and state-dependent mechanisms for respiratory rhythm and pattern generation. Progress in Brain Research. 165: 201-20. PMID 17925248 DOI: 10.1016/S0079-6123(06)65013-9  1
2007 Smith JC, Abdala AP, Koizumi H, Rybak IA, Paton JF. Spatial and functional architecture of the mammalian brain stem respiratory network: a hierarchy of three oscillatory mechanisms. Journal of Neurophysiology. 98: 3370-87. PMID 17913982 DOI: 10.1152/Jn.00985.2007  1
2007 Sopko R, Huang D, Smith JC, Figeys D, Andrews BJ. Activation of the Cdc42p GTPase by cyclin-dependent protein kinases in budding yeast. The Embo Journal. 26: 4487-500. PMID 17853895 DOI: 10.1038/Sj.Emboj.7601847  1
2007 Smith JC, Duchesne MA, Tozzi P, Ethier M, Figeys D. A differential phosphoproteomic analysis of retinoic acid-treated P19 cells. Journal of Proteome Research. 6: 3174-86. PMID 17622165 DOI: 10.1021/Pr070122R  1
2007 Smith JC, Lambert JP, Elisma F, Figeys D. Proteomics in 2005/2006: developments, applications and challenges. Analytical Chemistry. 79: 4325-43. PMID 17477510 DOI: 10.1021/Ac070741J  1
2007 Denis NJ, Vasilescu J, Lambert JP, Smith JC, Figeys D. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. Proteomics. 7: 868-74. PMID 17370265 DOI: 10.1002/Pmic.200600410  1
2007 Vasilescu J, Zweitzig DR, Denis NJ, Smith JC, Ethier M, Haines DS, Figeys D. The proteomic reactor facilitates the analysis of affinity-purified proteins by mass spectrometry: application for identifying ubiquitinated proteins in human cells. Journal of Proteome Research. 6: 298-305. PMID 17203973 DOI: 10.1021/Pr060438J  1
2007 Hou W, Ethier M, Smith JC, Sheng Y, Figeys D. Multiplexed proteomic reactor for the processing of proteomic samples. Analytical Chemistry. 79: 39-44. PMID 17194119 DOI: 10.1021/Ac061248V  1
2007 Purvis LK, Smith JC, Koizumi H, Butera RJ. Intrinsic bursters increase the robustness of rhythm generation in an excitatory network. Journal of Neurophysiology. 97: 1515-26. PMID 17167061 DOI: 10.1152/Jn.00908.2006  1
2007 Smith JC. Spin transport in the International Linear Collider Proceedings of the Ieee Particle Accelerator Conference. 1955-1957. DOI: 10.1109/PAC.2007.4441121  1
2007 Tenenbaum P, Latina A, Smith JC, Kubo K. Emittance preservation in the international linear collider ring to main linac transfer line Proceedings of the Ieee Particle Accelerator Conference. 3118-3120. DOI: 10.1109/PAC.2007.4440687  1
2007 Smith JC, Latina A, Schulte D, Poirier F, Walker N, Lebrun P, Ranjan K, Kubo K, Tenenbaum P, Eliasson P. Comparison of tracking codes for the international linear collider Proceedings of the Ieee Particle Accelerator Conference. 3020-3022. DOI: 10.1109/PAC.2007.4440654  1
2006 Imhof P, Noé F, Fischer S, Smith JC. AM1/d Parameters for Magnesium in Metalloenzymes. Journal of Chemical Theory and Computation. 2: 1050-6. PMID 26633065 DOI: 10.1021/Ct600092C  0.01
2006 Purvis LK, Wright TM, Smith JC, Butera RJ. Significance of pacemaker vs. non-pacemaker neurons in an excitatory rhythmic network. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 607-8. PMID 17946408 DOI: 10.1109/IEMBS.2006.260511  1
2006 Balog E, Smith JC, Perahia D. Conformational heterogeneity and low-frequency vibrational modes of proteins. Physical Chemistry Chemical Physics : Pccp. 8: 5543-8. PMID 17136269 DOI: 10.1039/B610075A  0.01
2006 Smith JC, Figeys D. Proteomics technology in systems biology. Molecular Biosystems. 2: 364-70. PMID 16880956 DOI: 10.1039/B606798K  1
2006 Paton JF, Abdala AP, Koizumi H, Smith JC, St-John WM. Respiratory rhythm generation during gasping depends on persistent sodium current. Nature Neuroscience. 9: 311-3. PMID 16474390 DOI: 10.1038/nn1650  1
2005 Vasilescu J, Smith JC, Ethier M, Figeys D. Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry. Journal of Proteome Research. 4: 2192-200. PMID 16335966 DOI: 10.1021/Pr050265I  1
2005 Lambert JP, Ethier M, Smith JC, Figeys D. Proteomics: from gel based to gel free. Analytical Chemistry. 77: 3771-87. PMID 15952756 DOI: 10.1021/Ac050586D  1
2005 Yuste R, MacLean JN, Smith J, Lansner A. The cortex as a central pattern generator. Nature Reviews. Neuroscience. 6: 477-83. PMID 15928717 DOI: 10.1038/Nrn1686  1
2005 Noé F, Ille F, Smith JC, Fischer S. Automated computation of low-energy pathways for complex rearrangements in proteins: application to the conformational switch of Ras p21. Proteins. 59: 534-44. PMID 15778967 DOI: 10.1002/Prot.20422  0.01
2005 Sagan D, Smith JC. The Tao accelerator simulation program Proceedings of the Ieee Particle Accelerator Conference. 2005: 4159-4161. DOI: 10.1109/PAC.2005.1591750  1
2005 Smith JC, Gibbons L, Patterson R, Rubin D, Sagan D, Tenenbaum P. Comparison of beam-based alignment algorithms for the ILC Proceedings of the Ieee Particle Accelerator Conference. 2005: 1847-1849. DOI: 10.1109/PAC.2005.1590933  1
2003 Smith JC, Palmer MA, Rubin DL, Sagan DC. Diagnosis of optical errors with a precision BPM system at CESR Proceedings of the Ieee Particle Accelerator Conference. 4: 2267-2269.  1
2003 Smith JC, Del Negro CA. Nonlinear Neural Network Dynamics in the Mammalian Respiratory Oscillator Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 4: 3816-3818.  1
2002 Del Negro CA, Koshiya N, Butera RJ, Smith JC. Persistent sodium current, membrane properties and bursting behavior of pre-bötzinger complex inspiratory neurons in vitro. Journal of Neurophysiology. 88: 2242-50. PMID 12424266 DOI: 10.1152/jn.00081.2002  1
2002 Del Negro CA, Wilson CG, Butera RJ, Rigatto H, Smith JC. Periodicity, mixed-mode oscillations, and quasiperiodicity in a rhythm-generating neural network. Biophysical Journal. 82: 206-14. PMID 11751309 DOI: 10.1016/S0006-3495(02)75387-3  1
2002 Smith JC. Generation of respiratory rhythm: Models and mechanisms Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 1509-1510.  1
2001 Butera RJ, Wilson CG, Delnegro CA, Smith JC. A methodology for achieving high-speed rates for artificial conductance injection in electrically excitable biological cells. Ieee Transactions On Bio-Medical Engineering. 48: 1460-70. PMID 11759927 DOI: 10.1109/10.966605  1
2001 Chemiack NS, Butera R, Champagnat J, Duffin J, Khoo MCK, Prabhakar NR, Poon CS, Robbins PA, Smith JC, Strohl KP. Workshop on modeling in the 21st century: An executive summary Advances in Experimental Medicine and Biology. 499: 9-14. PMID 11729940  1
2001 Rigatto H, Wilson CG, Koshiya N, House S, Smith JC. Stationary organotypic culture of the pre-Bötzinger complex from the newborn rat. Advances in Experimental Medicine and Biology. 499: 139-45. PMID 11729868 DOI: 10.1007/978-1-4615-1375-9_22  1
2001 Del Negro CA, Wilson CG, Butera RJ, Koshiya N, Johnson SM, Smith JC. Unstable breathing rhythms and quasiperiodicity in the pre-Bötzinger complex. Advances in Experimental Medicine and Biology. 499: 133-8. PMID 11729867 DOI: 10.1007/978-1-4615-1375-9_21  1
2001 Wilson CG, Butera RJ, Del Negro CA, Rinzel J, Smith JC. Interfacing computer models with real neurons: respiratory "cyberneurons" created with the dynamic clamp. Advances in Experimental Medicine and Biology. 499: 119-24. PMID 11729865 DOI: 10.1007/978-1-4615-1375-9_19  1
2001 Del Negro CA, Johnson SM, Butera RJ, Smith JC. Models of respiratory rhythm generation in the pre-Bötzinger complex. III. Experimental tests of model predictions. Journal of Neurophysiology. 86: 59-74. PMID 11431488 DOI: 10.1152/Jn.2001.86.1.59  1
2001 Johnson SM, Koshiya N, Smith JC. Isolation of the kernel for respiratory rhythm generation in a novel preparation: the pre-Bötzinger complex "island". Journal of Neurophysiology. 85: 1772-6. PMID 11287498 DOI: 10.1152/Jn.2001.85.4.1772  1
2001 Smith J, Koshiya N, Negro CD, Butera R, Wilson C. Mechanisms of respiratory rhythm generation in vitro. I. Pacemaker neurons and networks in the pre-Botzinger complex (pre-BotC). Respiratory Research. 2: 1-1. DOI: 10.1186/Rr99  0.72
2000 Smith JC, Butera RJ, Koshiya N, Del Negro C, Wilson CG, Johnson SM. Respiratory rhythm generation in neonatal and adult mammals: the hybrid pacemaker-network model. Respiration Physiology. 122: 131-47. PMID 10967340 DOI: 10.1016/S0034-5687(00)00155-9  1
2000 Butera RJ, Johnson SM, Delnegro CA, Rinzel J, Smith JC. Dynamics of excitatory networks of bursting pacemaking neurons: Modeling and experimental studies of the respiratory central pattern generator Neurocomputing. 32: 323-330. DOI: 10.1016/S0925-2312(00)00181-8  1
1999 Koshiya N, Smith JC. Neuronal pacemaker for breathing visualized in vitro Nature. 400: 360-363. PMID 10432113 DOI: 10.1038/22540  1
1999 Butera RJ, Rinzel J, Smith JC. Models of respiratory rhythm generation in the pre-Bötzinger complex. II. Populations Of coupled pacemaker neurons. Journal of Neurophysiology. 82: 398-415. PMID 10400967 DOI: 10.1152/Jn.1999.82.1.398  1
1999 Butera RJ, Rinzel J, Smith JC. Models of respiratory rhythm generation in the pre-Bötzinger complex. I. Bursting pacemaker neurons. Journal of Neurophysiology. 82: 382-97. PMID 10400966 DOI: 10.1152/Jn.1999.82.1.382  1
1999 Butera RJ, Wilson CG, Rinzel J, Smith JC. Fast model-reference current injection using RT-Linux Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 876.  1
1999 Butera RJ, DelNegro C, Rinzel J, Smith JC. Theoretical and experimental studies of the mammalian respiratory rhythm generator: The kernel of the respiratory neural control system Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 1175.  1
1997 Funk GD, Johnson SM, Smith JC, Dong XW, Lai J, Feldman JL. Functional respiratory rhythm generating networks in neonatal mice lacking NMDAR1 gene. Journal of Neurophysiology. 78: 1414-20. PMID 9310432 DOI: 10.1152/Jn.1997.78.3.1414  1
1997 Smith JC, Koshiya N. The neuronal kernel for respiratory rhythm generation in the pre-Bötzinger Complex: Experimental analysis in vitro and computational model Faseb Journal. 11: A206.  1
1996 Johnson SM, Smith JC, Feldman JL. Modulation of respiratory rhythm in vitro: role of Gi/o protein-mediated mechanisms. Journal of Applied Physiology (Bethesda, Md. : 1985). 80: 2120-33. PMID 8806921 DOI: 10.1152/Jappl.1996.80.6.2120  1
1996 Smith JC. New computational models of the respiratory oscillator in mammals Advances in Experimental Medicine and Biology. 393: 7-13. PMID 8629522 DOI: 10.1007/978-1-4615-1933-1_2  1
1996 Smith JC, Marks WB, Koshiya N. Animation of the respiratory network Faseb Journal. 10: A408.  1
1995 Funk GD, Smith JC, Feldman JL. Modulation of neural network activity in vitro by cyclothiazide, a drug that blocks desensitization of AMPA receptors. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 15: 4046-56. PMID 7751964 DOI: 10.1523/Jneurosci.15-05-04046.1995  1
1995 Schwarzacher SW, Smith JC, Richter DW. Pre-Bötzinger complex in the cat. Journal of Neurophysiology. 73: 1452-61. PMID 7643160 DOI: 10.1152/Jn.1995.73.4.1452  1
1994 Johnson SM, Smith JC, Funk GD, Feldman JL. Pacemaker behavior of respiratory neurons in medullary slices from neonatal rat. Journal of Neurophysiology. 72: 2598-608. PMID 7897477 DOI: 10.1152/Jn.1994.72.6.2598  1
1994 Funk GD, Smith JC, Feldman JL. Development of thyrotropin-releasing hormone and norepinephrine potentiation of inspiratory-related hypoglossal motoneuron discharge in neonatal and juvenile mice in vitro. Journal of Neurophysiology. 72: 2538-41. PMID 7884479 DOI: 10.1152/Jn.1994.72.5.2538  1
1993 Brockhaus J, Ballanyi K, Smith JC, Richter DW. Microenvironment of respiratory neurons in the in vitro brainstem-spinal cord of neonatal rats. The Journal of Physiology. 462: 421-45. PMID 8331589 DOI: 10.1113/Jphysiol.1993.Sp019562  1
1993 Funk GD, Smith JC, Feldman JL. Generation and transmission of respiratory oscillations in medullary slices: role of excitatory amino acids. Journal of Neurophysiology. 70: 1497-515. PMID 8283211 DOI: 10.1152/Jn.1993.70.4.1497  1
1993 Parry R, Claborn G, Haas A, Landis R, Page W, Smith J. High reliability oxygen deficiency monitoring system Proceedings of the Ieee Particle Accelerator Conference. 3: 2222-2224.  1
1992 Smith JC, Ballanyi K, Richter DW. Whole-cell patch-clamp recordings from respiratory neurons in neonatal rat brainstem in vitro. Neuroscience Letters. 134: 153-6. PMID 1589140 DOI: 10.1016/0304-3940(92)90504-Z  1
1992 Greer JJ, Smith JC, Feldman JL. Respiratory and locomotor patterns generated in the fetal rat brain stem-spinal cord in vitro. Journal of Neurophysiology. 67: 996-9. PMID 1588395 DOI: 10.1152/Jn.1992.67.4.996  1
1992 Greer JJ, Smith JC, Feldman JL. Glutamate release and presynaptic action of AP4 during inspiratory drive to phrenic motoneurons. Brain Research. 576: 355-7. PMID 1355388 DOI: 10.1016/0006-8993(92)90705-E  1
1991 Feldman JL, Smith JC, Liu G. Respiratory pattern generation in mammals: in vitro en bloc analyses. Current Opinion in Neurobiology. 1: 590-4. PMID 1822301 DOI: 10.1016/S0959-4388(05)80033-9  1
1991 Smith JC, Ellenberger HH, Ballanyi K, Richter DW, Feldman JL. Pre-Bötzinger complex: a brainstem region that may generate respiratory rhythm in mammals. Science (New York, N.Y.). 254: 726-9. PMID 1683005 DOI: 10.1126/Science.1683005  1
1991 Greer JJ, Smith JC, Feldman JL. Role of excitatory amino acids in the generation and transmission of respiratory drive in neonatal rat. The Journal of Physiology. 437: 727-49. PMID 1653855 DOI: 10.1113/Jphysiol.1991.Sp018622  1
1990 Smith JC, Greer JJ, Liu GS, Feldman JL. Neural mechanisms generating respiratory pattern in mammalian brain stem-spinal cord in vitro. I. Spatiotemporal patterns of motor and medullary neuron activity. Journal of Neurophysiology. 64: 1149-69. PMID 2258739 DOI: 10.1152/Jn.1990.64.4.1149  1
1990 Feldman JL, Smith JC, Ellenberger HH, Connelly CA, Liu GS, Greer JJ, Lindsay AD, Otto MR. Neurogenesis of respiratory rhythm and pattern: emerging concepts. The American Journal of Physiology. 259: R879-86. PMID 2240272 DOI: 10.1152/Ajpregu.1990.259.5.R879  1
1990 Liu G, Feldman JL, Smith JC. Excitatory amino acid-mediated transmission of inspiratory drive to phrenic motoneurons. Journal of Neurophysiology. 64: 423-36. PMID 1976765 DOI: 10.1152/Jn.1990.64.2.423  1
1990 Smith JC, Feldman JL. Organization of oscillatory motor pattern generation networks in the mammalian central nervous system Ijcnn. International Joint Conference On Neural Networks. 651-656.  1
1989 McCrimmon DR, Smith JC, Feldman JL. Involvement of excitatory amino acids in neurotransmission of inspiratory drive to spinal respiratory motoneurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 9: 1910-21. PMID 2542482  1
1989 Feldman JL, Smith JC. Cellular mechanisms underlying modulation of breathing pattern in mammals. Annals of the New York Academy of Sciences. 563: 114-30. PMID 2476055 DOI: 10.1111/J.1749-6632.1989.Tb42194.X  1
1989 Smith JC, Morrison DE, Ellenberger HH, Otto MR, Feldman JL. Brainstem projections to the major respiratory neuron populations in the medulla of the cat. The Journal of Comparative Neurology. 281: 69-96. PMID 2466879 DOI: 10.1002/cne.902810107  1
1988 Smith JC, Liu G, Feldman JL. Intracellular recording from phrenic motoneurons receiving respiratory drive in vitro. Neuroscience Letters. 88: 27-32. PMID 3399129 DOI: 10.1016/0304-3940(88)90310-2  1
1988 Smith JC, Feldman JL, Schmidt BJ. Neural mechanisms generating locomotion studied in mammalian brain stem-spinal cord in vitro. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 2: 2283-8. PMID 2450802 DOI: 10.1096/Fasebj.2.7.2450802  1
1987 Smith JC, Feldman JL. In vitro brainstem-spinal cord preparations for study of motor systems for mammalian respiration and locomotion. Journal of Neuroscience Methods. 21: 321-33. PMID 2890797 DOI: 10.1016/0165-0270(87)90126-9  1
1986 Smith JC, Feldman JL. In vitro studies of mammalian respiration and locomotion Journal of Neuroscience Methods. 17: 223-224. DOI: 10.1016/0165-0270(86)90103-2  1
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