| Year |
Citation |
Score |
| 2023 |
Rahmouni M, De Marco L, Spadoni JL, Tison M, Medina-Santos R, Labib T, Noirel J, Tamouza R, Limou S, Delaneau O, Fellay J, Bensussan A, Le Clerc S, McLaren PJ, Zagury JF. The allele corresponds to a very large haploblock likely explaining its massive effect for HIV-1 elite control. Frontiers in Immunology. 14: 1305856. PMID 38146367 DOI: 10.3389/fimmu.2023.1305856 |
0.806 |
|
| 2022 |
Parikh VN, Ioannidis AG, Jimenez-Morales D, Gorzynski JE, De Jong HN, Liu X, Roque J, Cepeda-Espinoza VP, Osoegawa K, Hughes C, Sutton SC, Youlton N, Joshi R, Amar D, Tanigawa Y, ... ... Delaneau O, et al. Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy. Nature Communications. 13: 5107. PMID 36042219 DOI: 10.1038/s41467-022-32397-8 |
0.337 |
|
| 2022 |
Valls-Margarit J, Galván-Femenía I, Matías-Sánchez D, Blay N, Puiggròs M, Carreras A, Salvoro C, Cortés B, Amela R, Farre X, Lerga-Jaso J, Puig M, Sánchez-Herrero JF, Moreno V, Perucho M, ... ... Delaneau O, et al. GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing. Nucleic Acids Research. 50: 2464-2479. PMID 35176773 DOI: 10.1093/nar/gkac076 |
0.391 |
|
| 2021 |
Rubinacci S, Ribeiro DM, Hofmeister RJ, Delaneau O. Efficient phasing and imputation of low-coverage sequencing data using large reference panels. Nature Genetics. 53: 120-126. PMID 33414550 DOI: 10.1038/s41588-020-00756-0 |
0.364 |
|
| 2020 |
Rubinacci S, Delaneau O, Marchini J. Genotype imputation using the Positional Burrows Wheeler Transform. Plos Genetics. 16: e1009049. PMID 33196638 DOI: 10.1371/journal.pgen.1009049 |
0.606 |
|
| 2019 |
Delaneau O, Zagury JF, Robinson MR, Marchini JL, Dermitzakis ET. Accurate, scalable and integrative haplotype estimation. Nature Communications. 10: 5436. PMID 31780650 DOI: 10.1038/S41467-019-13225-Y |
0.749 |
|
| 2019 |
Delaneau O, Zazhytska M, Borel C, Giannuzzi G, Rey G, Howald C, Kumar S, Ongen H, Popadin K, Marbach D, Ambrosini G, Bielser D, Hacker D, Romano L, Ribaux P, et al. Chromatin three-dimensional interactions mediate genetic effects on gene expression. Science (New York, N.Y.). 364. PMID 31048460 DOI: 10.1126/Science.Aat8266 |
0.366 |
|
| 2019 |
Aguiar VRC, César J, Delaneau O, Dermitzakis ET, Meyer D. Expression estimation and eQTL mapping for HLA genes with a personalized pipeline. Plos Genetics. 15: e1008091. PMID 31009447 DOI: 10.1371/Journal.Pgen.1008091 |
0.395 |
|
| 2019 |
Schork AJ, Won H, Appadurai V, Nudel R, Gandal M, Delaneau O, Revsbech Christiansen M, Hougaard DM, Bækved-Hansen M, Bybjerg-Grauholm J, Giørtz Pedersen M, Agerbo E, Bøcker Pedersen C, Neale BM, Daly MJ, et al. A genome-wide association study of shared risk across psychiatric disorders implicates gene regulation during fetal neurodevelopment. Nature Neuroscience. PMID 30692689 DOI: 10.1038/S41593-018-0320-0 |
0.409 |
|
| 2018 |
Bycroft C, Freeman C, Petkova D, Band G, Elliott LT, Sharp K, Motyer A, Vukcevic D, Delaneau O, O'Connell J, Cortes A, Welsh S, Young A, Effingham M, McVean G, et al. The UK Biobank resource with deep phenotyping and genomic data. Nature. 562: 203-209. PMID 30305743 DOI: 10.1038/S41586-018-0579-Z |
0.702 |
|
| 2017 |
Garieri M, Delaneau O, Santoni F, Fish RJ, Mull D, Carninci P, Dermitzakis ET, Antonarakis SE, Fort A. The effect of genetic variation on promoter usage and enhancer activity. Nature Communications. 8: 1358. PMID 29116076 DOI: 10.1038/S41467-017-01467-7 |
0.426 |
|
| 2017 |
Ongen H, Brown AA, Delaneau O, Panousis NI, Nica AC, Dermitzakis ET. Estimating the causal tissues for complex traits and diseases. Nature Genetics. PMID 29058715 DOI: 10.1038/Ng.3981 |
0.389 |
|
| 2017 |
Brown AA, Viñuela A, Delaneau O, Spector TD, Small KS, Dermitzakis ET. Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues. Nature Genetics. PMID 29058714 DOI: 10.1038/Ng.3979 |
0.482 |
|
| 2017 |
Delaneau O, Ongen H, Brown AA, Fort A, Panousis NI, Dermitzakis ET. A complete tool set for molecular QTL discovery and analysis. Nature Communications. 8: 15452. PMID 28516912 DOI: 10.1038/Ncomms15452 |
0.428 |
|
| 2017 |
Fort A, Panousis NI, Garieri M, Antonarakis SE, Lappalainen T, Dermitzakis ET, Delaneau O. MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay data sets. Bioinformatics (Oxford, England). PMID 28186259 DOI: 10.1093/Bioinformatics/Btx074 |
0.323 |
|
| 2016 |
Astle WJ, Elding H, Jiang T, Allen D, Ruklisa D, Mann AL, Mead D, Bouman H, Riveros-Mckay F, Kostadima MA, Lambourne JJ, Sivapalaratnam S, Downes K, Kundu K, Bomba L, ... ... Delaneau O, et al. The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease. Cell. 167: 1415-1429.e19. PMID 27863252 DOI: 10.1016/J.Cell.2016.10.042 |
0.674 |
|
| 2016 |
McCarthy S, Das S, Kretzschmar W, Delaneau O, Wood AR, Teumer A, Kang HM, Fuchsberger C, Danecek P, Sharp K, Luo Y, Sidore C, Kwong A, Timpson N, Koskinen S, et al. A reference panel of 64,976 haplotypes for genotype imputation. Nature Genetics. PMID 27548312 DOI: 10.1038/Ng.3643 |
0.493 |
|
| 2016 |
O'Connell J, Sharp K, Shrine N, Wain L, Hall I, Tobin M, Zagury JF, Delaneau O, Marchini J. Haplotype estimation for biobank-scale data sets. Nature Genetics. PMID 27270105 DOI: 10.1038/Ng.3583 |
0.71 |
|
| 2016 |
Sharp K, Kretzschmar W, Delaneau O, Marchini J. Phasing for medical sequencing using rare variants and large haplotype reference panels. Bioinformatics (Oxford, England). 32: 1974-80. PMID 27153703 DOI: 10.1093/Bioinformatics/Btw065 |
0.643 |
|
| 2016 |
Ongen H, Buil A, Brown AA, Dermitzakis ET, Delaneau O. Fast and efficient QTL mapper for thousands of molecular phenotypes. Bioinformatics (Oxford, England). 32: 1479-85. PMID 26708335 DOI: 10.1093/Bioinformatics/Btv722 |
0.388 |
|
| 2015 |
Wain LV, Shrine N, Miller S, Jackson VE, Ntalla I, Artigas MS, Billington CK, Kheirallah AK, Allen R, Cook JP, Probert K, Obeidat M, Bossé Y, Hao K, Postma DS, ... ... Delaneau O, et al. Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank. The Lancet. Respiratory Medicine. PMID 26423011 DOI: 10.1016/S2213-2600(15)00283-0 |
0.6 |
|
| 2015 |
Spadoni JL, Rucart P, Le Clerc S, van Manen D, Coulonges C, Ulveling D, Laville V, Labib T, Taing L, Delaneau O, Montes M, Schuitemaker H, Noirel J, Zagury JF. Identification of Genes Whose Expression Profile Is Associated with Non-Progression towards AIDS Using eQTLs. Plos One. 10: e0136989. PMID 26367535 DOI: 10.1371/Journal.Pone.0136989 |
0.781 |
|
| 2015 |
Waszak SM, Delaneau O, Gschwind AR, Kilpinen H, Raghav SK, Witwicki RM, Orioli A, Wiederkehr M, Panousis NI, Yurovsky A, Romano-Palumbo L, Planchon A, Bielser D, Padioleau I, Udin G, et al. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. Cell. 162: 1039-50. PMID 26300124 DOI: 10.1016/J.Cell.2015.08.001 |
0.367 |
|
| 2015 |
Borel C, Ferreira PG, Santoni F, Delaneau O, Fort A, Popadin KY, Garieri M, Falconnet E, Ribaux P, Guipponi M, Padioleau I, Carninci P, Dermitzakis ET, Antonarakis SE. Biased allelic expression in human primary fibroblast single cells. American Journal of Human Genetics. 96: 70-80. PMID 25557783 DOI: 10.1016/J.Ajhg.2014.12.001 |
0.387 |
|
| 2014 |
Delaneau O, Marchini J. Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel. Nature Communications. 5: 3934. PMID 25653097 DOI: 10.1038/Ncomms4934 |
0.711 |
|
| 2014 |
Le Clerc S, Delaneau O, Coulonges C, Spadoni JL, Labib T, Laville V, Ulveling D, Noirel J, Montes M, Schächter F, Caillat-Zucman S, Zagury JF. Evidence after imputation for a role of MICA variants in nonprogression and elite control of HIV type 1 infection. The Journal of Infectious Diseases. 210: 1946-50. PMID 24939907 DOI: 10.1093/Infdis/Jiu342 |
0.817 |
|
| 2014 |
O'Connell J, Gurdasani D, Delaneau O, Pirastu N, Ulivi S, Cocca M, Traglia M, Huang J, Huffman JE, Rudan I, McQuillan R, Fraser RM, Campbell H, Polasek O, Asiki G, et al. A general approach for haplotype phasing across the full spectrum of relatedness. Plos Genetics. 10: e1004234. PMID 24743097 DOI: 10.1371/Journal.Pgen.1004234 |
0.735 |
|
| 2013 |
Delaneau O, Howie B, Cox AJ, Zagury JF, Marchini J. Haplotype estimation using sequencing reads. American Journal of Human Genetics. 93: 687-96. PMID 24094745 DOI: 10.1016/J.Ajhg.2013.09.002 |
0.715 |
|
| 2013 |
McLaren PJ, Coulonges C, Ripke S, van den Berg L, Buchbinder S, Carrington M, Cossarizza A, Dalmau J, Deeks SG, Delaneau O, De Luca A, Goedert JJ, Haas D, Herbeck JT, Kathiresan S, et al. Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. Plos Pathogens. 9: e1003515. PMID 23935489 DOI: 10.1371/Journal.Ppat.1003515 |
0.844 |
|
| 2013 |
Delaneau O, Zagury JF, Marchini J. Improved whole-chromosome phasing for disease and population genetic studies. Nature Methods. 10: 5-6. PMID 23269371 DOI: 10.1038/Nmeth.2307 |
0.713 |
|
| 2013 |
Le Clerc S, Taing L, Ezzedine K, Latreille J, Delaneau O, Labib T, Coulonges C, Bernard A, Melak S, Carpentier W, Malvy D, Jdid R, Galan P, Hercberg S, Morizot F, et al. A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging. The Journal of Investigative Dermatology. 133: 929-35. PMID 23223146 DOI: 10.1038/Jid.2012.458 |
0.781 |
|
| 2012 |
Delaneau O, Zagury JF. Haplotype inference. Methods in Molecular Biology (Clifton, N.J.). 888: 177-96. PMID 22665282 DOI: 10.1007/978-1-61779-870-2_11 |
0.601 |
|
| 2012 |
Limou S, Delaneau O, van Manen D, An P, Sezgin E, Le Clerc S, Coulonges C, Troyer JL, Veldink JH, van den Berg LH, Spadoni JL, Taing L, Labib T, Montes M, Delfraissy JF, et al. Multicohort genomewide association study reveals a new signal of protection against HIV-1 acquisition. The Journal of Infectious Diseases. 205: 1155-62. PMID 22362864 DOI: 10.1093/Infdis/Jis028 |
0.757 |
|
| 2011 |
Delaneau O, Marchini J, Zagury JF. A linear complexity phasing method for thousands of genomes. Nature Methods. 9: 179-81. PMID 22138821 DOI: 10.1038/Nmeth.1785 |
0.737 |
|
| 2011 |
van Manen D, Delaneau O, Kootstra NA, Boeser-Nunnink BD, Limou S, Bol SM, Burger JA, Zwinderman AH, Moerland PD, van 't Slot R, Zagury JF, van 't Wout AB, Schuitemaker H. Genome-wide association scan in HIV-1-infected individuals identifying variants influencing disease course. Plos One. 6: e22208. PMID 21811574 DOI: 10.1371/Journal.Pone.0022208 |
0.79 |
|
| 2011 |
Nikolova M, Carriere M, Jenabian MA, Limou S, Younas M, Kök A, Huë S, Seddiki N, Hulin A, Delaneau O, Schuitemaker H, Herbeck JT, Mullins JI, Muhtarova M, Bensussan A, et al. CD39/adenosine pathway is involved in AIDS progression. Plos Pathogens. 7: e1002110. PMID 21750674 DOI: 10.1371/Journal.Ppat.1002110 |
0.726 |
|
| 2011 |
Troyer JL, Nelson GW, Lautenberger JA, Chinn L, McIntosh C, Johnson RC, Sezgin E, Kessing B, Malasky M, Hendrickson SL, Li G, Pontius J, Tang M, An P, Winkler CA, ... ... Delaneau O, et al. Genome-wide association study implicates PARD3B-based AIDS restriction. The Journal of Infectious Diseases. 203: 1491-502. PMID 21502085 DOI: 10.1093/Infdis/Jir046 |
0.829 |
|
| 2011 |
Le Clerc S, Coulonges C, Delaneau O, Van Manen D, Herbeck JT, Limou S, An P, Martinson JJ, Spadoni JL, Therwath A, Veldink JH, van den Berg LH, Taing L, Labib T, Mellak S, et al. Screening low-frequency SNPS from genome-wide association study reveals a new risk allele for progression to AIDS. Journal of Acquired Immune Deficiency Syndromes (1999). 56: 279-84. PMID 21107268 DOI: 10.1097/Qai.0B013E318204982B |
0.784 |
|
| 2010 |
Limou S, Coulonges C, Herbeck JT, van Manen D, An P, Le Clerc S, Delaneau O, Diop G, Taing L, Montes M, van't Wout AB, Gottlieb GS, Therwath A, Rouzioux C, Delfraissy JF, et al. Multiple-cohort genetic association study reveals CXCR6 as a new chemokine receptor involved in long-term nonprogression to AIDS. The Journal of Infectious Diseases. 202: 908-15. PMID 20704485 DOI: 10.1086/655782 |
0.763 |
|
| 2009 |
Clerc SL, Limou S, Coulonges C, Carpentier W, Dina C, Taing L, Delaneau O, Labib T, Sladek R, Group AG, Deveau C, Guillemain H, Ratsimandresy R, Montes M, Spadoni JL, et al. Genomewide Association Study of a Rapid Progression Cohort Identifies New Susceptibility Alleles for AIDS (ANRS Genomewide Association Study 03) Journal of Infectious Diseases. 200: 1194-1201. PMID 19754311 DOI: 10.1086/605892 |
0.761 |
|
| 2009 |
Limou S, Le Clerc S, Coulonges C, Carpentier W, Dina C, Delaneau O, Labib T, Taing L, Sladek R, Deveau C, Ratsimandresy R, Montes M, Spadoni JL, Lelièvre JD, Lévy Y, et al. Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS genomewide association study 02) Journal of Infectious Diseases. 199: 419-426. PMID 19115949 DOI: 10.1086/596067 |
0.788 |
|
| 2008 |
Delaneau O, Coulonges C, Zagury JF. Shape-IT: new rapid and accurate algorithm for haplotype inference. Bmc Bioinformatics. 9: 540. PMID 19087329 DOI: 10.1186/1471-2105-9-540 |
0.756 |
|
| 2007 |
Delaneau O, Coulonges C, Boelle PY, Nelson G, Spadoni JL, Zagury JF. ISHAPE: new rapid and accurate software for haplotyping. Bmc Bioinformatics. 8: 205. PMID 17573965 DOI: 10.1186/1471-2105-8-205 |
0.767 |
|
| 2006 |
Coulonges C, Delaneau O, Girard M, Do H, Adkins R, Spadoni JL, Zagury JF. Computation of haplotypes on SNPs subsets: advantage of the "global method". Bmc Genetics. 7: 50. PMID 17067372 DOI: 10.1186/1471-2156-7-50 |
0.812 |
|
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