Katherine Joyce Siddle - Publications

Affiliations: 
UPMC Univ Paris 6, France 
Area:
Immune response, RNA sequencing

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kotliar D, Raju S, Tabrizi S, Odia I, Goba A, Momoh M, Sandi JD, Nair P, Phelan E, Tariyal R, Eromon PE, Mehta S, Robles-Sikisaka R, Siddle KJ, Stremlau M, et al. Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever. Nature Microbiology. PMID 38326571 DOI: 10.1038/s41564-023-01589-3  0.313
2020 Rotival M, Siddle KJ, Silvert M, Pothlichet J, Quach H, Quintana-Murci L. Population variation in miRNAs and isomiRs and their impact on human immunity to infection. Genome Biology. 21: 187. PMID 32731901 DOI: 10.1186/S13059-020-02098-W  0.697
2020 Ajogbasile FV, Oguzie JU, Oluniyi PE, Eromon PE, Uwanibe JN, Mehta SB, Siddle KJ, Odia I, Winnicki SM, Akpede N, Akpede G, Okogbenin S, Ogbaini-Emovon E, MacInnis BL, Folarin OA, et al. Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria. Scientific Reports. 10: 3180. PMID 32081931 DOI: 10.1038/S41598-020-59880-W  0.301
2020 Wohl S, Metsky HC, Schaffner SF, Piantadosi A, Burns M, Lewnard JA, Chak B, Krasilnikova LA, Siddle KJ, Matranga CB, Bankamp B, Hennigan S, Sabina B, Byrne EH, McNall RJ, et al. Combining genomics and epidemiology to track mumps virus transmission in the United States. Plos Biology. 18: e3000611. PMID 32045407 DOI: 10.1371/Journal.Pbio.3000611  0.356
2019 Lopez M, Choin J, Sikora M, Siddle K, Harmant C, Costa HA, Silvert M, Mouguiama-Daouda P, Hombert JM, Froment A, Le Bomin S, Perry GH, Barreiro LB, Bustamante CD, Verdu P, et al. Genomic Evidence for Local Adaptation of Hunter-Gatherers to the African Rainforest. Current Biology : Cb. PMID 31402299 DOI: 10.1016/J.Cub.2019.07.013  0.726
2019 Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, et al. Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. Nature Biotechnology. 37: 160-168. PMID 30718881 DOI: 10.1038/S41587-018-0006-X  0.346
2018 Siddle KJ, Eromon P, Barnes KG, Mehta S, Oguzie JU, Odia I, Schaffner SF, Winnicki SM, Shah RR, Qu J, Wohl S, Brehio P, Iruolagbe C, Aiyepada J, Uyigue E, et al. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. The New England Journal of Medicine. PMID 30332564 DOI: 10.1056/Nejmoa1804498  0.369
2017 Nejad C, Pillman KA, Siddle KJ, Pepin G, Änkö ML, McCoy CE, Beilharz T, Quintana-Murci L, Goodall GJ, Bracken CP, Gantier MP. miR-222 isoforms are differentially regulated by type-I interferon. Rna (New York, N.Y.). PMID 29263133 DOI: 10.1261/Rna.064550.117  0.656
2016 Pai AA, Baharian G, Pagé Sabourin A, Brinkworth JF, Nédélec Y, Foley JW, Grenier JC, Siddle KJ, Dumaine A, Yotova V, Johnson ZP, Lanford RE, Burge CB, Barreiro LB. Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection. Plos Genetics. 12: e1006338. PMID 27690314 DOI: 10.1371/Journal.Pgen.1006338  0.676
2015 Fagny M, Patin E, MacIsaac JL, Rotival M, Flutre T, Jones MJ, Siddle KJ, Quach H, Harmant C, McEwen LM, Froment A, Heyer E, Gessain A, Betsem E, Mouguiama-Daouda P, et al. The epigenomic landscape of African rainforest hunter-gatherers and farmers. Nature Communications. 6: 10047. PMID 26616214 DOI: 10.1038/Ncomms10047  0.676
2015 Siddle KJ, Tailleux L, Deschamps M, Loh YHE, Deluen C, Gicquel B, Antoniewski C, Barreiro LB, Farinelli L, Quintana-Murci L. Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs Plos Genetics. 11. PMID 25793259 DOI: 10.1371/Journal.Pgen.1005064  0.69
2014 Siddle KJ, Quintana-Murci L. The Red Queen's long race: human adaptation to pathogen pressure. Current Opinion in Genetics & Development. 29: 31-8. PMID 25170983 DOI: 10.1016/J.Gde.2014.07.004  0.551
2014 Patin E, Siddle KJ, Laval G, Quach H, Harmant C, Becker N, Froment A, Régnault B, Lemée L, Gravel S, Hombert JM, Van der Veen L, Dominy NJ, Perry GH, Barreiro LB, et al. The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nature Communications. 5: 3163. PMID 24495941 DOI: 10.1038/Ncomms4163  0.724
2014 Siddle KJ, Deschamps M, Tailleux L, Nédélec Y, Pothlichet J, Lugo-Villarino G, Libri V, Gicquel B, Neyrolles O, Laval G, Patin E, Barreiro LB, Quintana-Murci L. A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection. Genome Research. 24: 850-9. PMID 24482540 DOI: 10.1101/Gr.161471.113  0.661
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