Ken J. Hampel - Publications

Affiliations: 
University of Vermont, Burlington, VT, United States 
Area:
RNA structure

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2006 Hampel KJ, Tinsley MM. Evidence for preorganization of the glmS ribozyme ligand binding pocket. Biochemistry. 45: 7861-71. PMID 16784238 DOI: 10.1021/Bi060337Z  0.421
2003 Sargueil B, Hampel KJ, Lambert D, Burke JM. In vitro selection of second site revertants analysis of the hairpin ribozyme active site. The Journal of Biological Chemistry. 278: 52783-91. PMID 14555657 DOI: 10.1074/Jbc.M306703200  0.475
2003 Hampel KJ, Burke JM. Solvent protection of the hammerhead ribozyme in the ground state: evidence for a cation-assisted conformational change leading to catalysis. Biochemistry. 42: 4421-9. PMID 12693938 DOI: 10.1021/Bi020659C  0.547
2001 Pinard R, Hampel KJ, Heckman JE, Lambert D, Chan PA, Major F, Burke JM. Functional involvement of G8 in the hairpin ribozyme cleavage mechanism. The Embo Journal. 20: 6434-42. PMID 11707414 DOI: 10.1093/Emboj/20.22.6434  0.549
2001 Hampel KJ, Pinard R, Burke JM. Catalytic and structural assays for the hairpin ribozyme. Methods in Enzymology. 341: 566-80. PMID 11582806 DOI: 10.1016/S0076-6879(01)41177-3  0.507
2001 Walter NG, Chan PA, Hampel KJ, Millar DP, Burke JM. A base change in the catalytic core of the hairpin ribozyme perturbs function but not domain docking. Biochemistry. 40: 2580-7. PMID 11327881 DOI: 10.1021/Bi001609F  0.66
2001 Hampel KJ, Burke JM. A conformational change in the "loop E-like" motif of the hairpin ribozyme is coincidental with domain docking and is essential for catalysis. Biochemistry. 40: 3723-9. PMID 11297441 DOI: 10.1021/Bi0028385  0.584
2001 Hampel KJ, Burke JM. Time-resolved hydroxyl-radical footprinting of RNA using Fe(II)-EDTA. Methods (San Diego, Calif.). 23: 233-9. PMID 11243836 DOI: 10.1006/Meth.2000.1134  0.492
2001 Pinard R, Lambert D, Heckman JE, Esteban JA, Gundlach CW, Hampel KJ, Glick GD, Walter NG, Major F, Burke JM. The hairpin ribozyme substrate binding-domain: a highly constrained D-shaped conformation. Journal of Molecular Biology. 307: 51-65. PMID 11243803 DOI: 10.1006/Jmbi.2000.4472  0.66
1998 Hampel KJ, Walter NG, Burke JM. The solvent-protected core of the hairpin ribozyme-substrate complex. Biochemistry. 37: 14672-82. PMID 9778342 DOI: 10.1021/Bi981083N  0.636
1998 Walter NG, Hampel KJ, Brown KM, Burke JM. Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer. The Embo Journal. 17: 2378-91. PMID 9545249 DOI: 10.1093/Emboj/17.8.2378  0.657
1995 Latimer LJ, Agazie YM, Braun RP, Hampel KJ, Lee JS. Specificity of monoclonal antibodies produced against phosphorothioate and ribo modified DNAs. Molecular Immunology. 32: 1057-64. PMID 8544855 DOI: 10.1016/0161-5890(95)00086-0  0.649
1995 Lee JS, Ashley C, Hampel KJ, Bradley R, Scraba DG. A stable interaction between separated pyrimidine.purine tracts in circular DNA. Journal of Molecular Biology. 252: 283-8. PMID 7563049 DOI: 10.1006/Jmbi.1995.0495  0.577
1994 Hampel KJ, Ashley C, Lee JS. Kilobase-range communication between polypurine.polypyrimidine tracts in linear plasmids mediated by triplex formation: a braided knot between two linear duplexes. Biochemistry. 33: 5674-81. PMID 8180192 DOI: 10.1021/Bi00185A002  0.575
1993 Lee JS, Latimer LJ, Hampel KJ. Coralyne binds tightly to both T.A.T- and C.G.C(+)-containing DNA triplexes. Biochemistry. 32: 5591-7. PMID 8504079 DOI: 10.1021/Bi00072A014  0.555
1993 Hampel KJ, Burkholder GD, Lee JS. Plasmid dimerization mediated by triplex formation between polypyrimidine-polypurine repeats. Biochemistry. 32: 1072-7. PMID 8424937 DOI: 10.1021/Bi00055A012  0.578
1993 Hampel KJ, Lee JS. Two-dimensional pulsed-field gel electrophoresis of yeast chromosomes: evidence for triplex-mediated DNA condensation. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 71: 190-6. PMID 7691093 DOI: 10.1139/O93-030  0.51
1991 Hampel KJ, Crosson P, Lee JS. Polyamines favor DNA triplex formation at neutral pH. Biochemistry. 30: 4455-9. PMID 2021635 DOI: 10.1021/Bi00232A012  0.557
1989 Latimer LJP, Hampel K, Lee JS. Synthetic repeating sequence DNAs containing phosphorothioates: Nuclease sensitivity and triplex formation Nucleic Acids Research. 17: 1549-1561. PMID 2922286 DOI: 10.1093/Nar/17.4.1549  0.531
Show low-probability matches.