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Anthony Fodor - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
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Year Citation  Score
2009 Fodor AA, Aldrich RW. Convergent evolution of alternative splices at domain boundaries of the BK channel. Annual Review of Physiology. 71: 19-36. PMID 18694345 DOI: 10.1146/annurev.physiol.010908.163124  0.568
2007 Pyott SJ, Meredith AL, Fodor AA, Vázquez AE, Yamoah EN, Aldrich RW. Cochlear function in mice lacking the BK channel alpha, beta1, or beta4 subunits. The Journal of Biological Chemistry. 282: 3312-24. PMID 17135251 DOI: 10.1074/Jbc.M608726200  0.655
2006 Meredith AL, Wiler SW, Miller BH, Takahashi JS, Fodor AA, Ruby NF, Aldrich RW. BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output. Nature Neuroscience. 9: 1041-9. PMID 16845385 DOI: 10.1038/nn1740  0.621
2006 Fodor AA, Aldrich RW. Statistical limits to the identification of ion channel domains by sequence similarity. The Journal of General Physiology. 127: 755-66. PMID 16735758 DOI: 10.1085/jgp.200509419  0.552
2004 Fodor AA, Aldrich RW. Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. Proteins. 56: 211-21. PMID 15211506 DOI: 10.1002/prot.20098  0.472
2004 Fodor AA, Aldrich RW. On evolutionary conservation of thermodynamic coupling in proteins. The Journal of Biological Chemistry. 279: 19046-50. PMID 15023994 DOI: 10.1074/jbc.M402560200  0.474
2004 Dekker JP, Fodor A, Aldrich RW, Yellen G. A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments. Bioinformatics (Oxford, England). 20: 1565-72. PMID 14962924 DOI: 10.1093/Bioinformatics/Bth128  0.51
1997 Fodor AA, Black KD, Zagotta WN. Tetracaine reports a conformational change in the pore of cyclic nucleotide-gated channels. The Journal of General Physiology. 110: 591-600. PMID 9348330 DOI: 10.1085/jgp.110.5.591  0.585
1997 Fodor AA, Gordon SE, Zagotta WN. Mechanism of tetracaine block of cyclic nucleotide-gated channels. The Journal of General Physiology. 109: 3-14. PMID 8997661 DOI: 10.1085/jgp.109.1.3  0.589
Low-probability matches (unlikely to be authored by this person)
2018 Sun X, Winglee K, Gharaibeh RZ, Gauthier J, He Z, Tripathi P, Avram D, Bruner S, Fodor A, Jobin C. Microbiota-derived Metabolic Factors Reduce Campylobacteriosis in Mice. Gastroenterology. PMID 29408609 DOI: 10.1053/J.Gastro.2018.01.042  0.278
2017 Tsilimigras MC, Fodor A, Jobin C. Carcinogenesis and therapeutics: the microbiota perspective. Nature Microbiology. 2: 17008. PMID 28225000 DOI: 10.1038/Nmicrobiol.2017.8  0.272
2013 Ellermann M, Maharshak N, Gharaibeh R, Sha W, Perez-Chanona E, Whitehead KJ, Jobin C, Fodor A, Plevy SE, Sartor RB. 317 Iron Supplemented Diet Protects Against Chronic Immune Mediated Colitis in IL-10 Deficient Mice Gastroenterology. 144: S-66. DOI: 10.1016/S0016-5085(13)60241-3  0.265
2015 Ray A, Basu S, Gharaibeh RZ, Cook LC, Kumar R, Lefkowitz EJ, Walker CR, Morrow CD, Franklin CL, Geiger TL, Salzman NH, Fodor A, Dittel BN. Gut Microbial Dysbiosis Due to Helicobacter Drives an Increase in Marginal Zone B Cells in the Absence of IL-10 Signaling in Macrophages. Journal of Immunology (Baltimore, Md. : 1950). PMID 26324769 DOI: 10.4049/Jimmunol.1500153  0.262
2014 Fodor A. Utilizing "omics" tools to study the complex gut ecosystem. Advances in Experimental Medicine and Biology. 817: 25-38. PMID 24997028 DOI: 10.1007/978-1-4939-0897-4_2  0.259
2016 Tomkovich SE, Craig C, Winglee K, Pope JL, Gauthier J, Ferraguti D, Sun X, Mühlbauer M, Perez-Chanona E, Fodor A, Sears CL, Jobin C. 328 Human Colorectal Cancer-Associated Biofilms Promote Tumorigenesis in Susceptible Mice Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)30374-2  0.257
2011 Uronis JM, Arthur JC, Keku T, Fodor A, Carroll IM, Cruz ML, Appleyard CB, Jobin C. Gut microbial diversity is reduced by the probiotic VSL#3 and correlates with decreased TNBS-induced colitis. Inflammatory Bowel Diseases. 17: 289-97. PMID 20564535 DOI: 10.1002/Ibd.21366  0.253
2020 Clinton S, Johnson J, Lambirth K, Sun S, Brouwer C, Keen O, Redmond M, Fodor A, Gibas C. Sediment Microbial Diversity in Urban Piedmont North Carolina Watersheds Receiving Wastewater Input Water. 12: 1557. DOI: 10.3390/W12061557  0.245
2013 Maharshak N, Ellermann M, Gharaibeh R, Sha W, Perez-Chanona E, Whitehead K, Jobin C, Fodor A, Plevy S, Sartor R. P689 Iron supplemented diet protects against chronic immune mediated colitis in mice Journal of Crohn's and Colitis. 7: S287. DOI: 10.1016/S1873-9946(13)60710-2  0.24
2016 Thomas RM, Beveridge M, Gauthier J, Sun X, Pope JL, Winglee K, Fodor A, Jobin C. Su1389 Intestinal Microbiota Influences Pancreatic Cancer Development, Which Associates With Alterations of the Tumor Microenvironment Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)31763-2  0.233
2013 Shanahan M, Carroll I, Poliacoff Z, Schoenborn A, Galanko J, Fodor A, Sartor R, Gulati A. P-240 Host Colonization by Commensal and Pathogenic Bacteria is Unaffected by Nod2 Expression Inflammatory Bowel Diseases. 19: S121-S122. DOI: 10.1097/01.Mib.0000437543.06447.63  0.232
2020 Howard AG, Fodor A, Sun S, Wang Y, Tsilimigras M, Du S, Wang H, Gordon-Larsen P. Abstract P211: Association Between Urbanization-related Change in Diet, the Gut Microbiota and Microbiome-related Metabolites in a Rapidly Urbanizing Environment in China Circulation. 141. DOI: 10.1161/Circ.141.Suppl_1.P211  0.229
2018 Sinha R, Ahsan H, Blaser M, Caporaso JG, Carmical JR, Chan AT, Fodor A, Gail MH, Harris CC, Helzlsouer K, Huttenhower C, Knight R, Kong HH, Lai GY, Hutchinson DLS, et al. Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017. Microbiome. 6: 210. PMID 30477563 DOI: 10.1186/S40168-018-0596-Z  0.229
2020 Heinberg LJ, Bond DS, Carroll I, Crosby R, Fodor A, Fouladi F, Gunstad J, Mitchell J, Peat C, Steffen K. Identifying mechanisms that predict weight trajectory after bariatric surgery: rationale and design of the biobehavioral trial. Surgery For Obesity and Related Diseases : Official Journal of the American Society For Bariatric Surgery. PMID 32768295 DOI: 10.1016/J.Soard.2020.06.020  0.228
2013 Muehlbauer M, Gharaibeh R, Arthur JC, Fodor A, Jobin C. 825 Intestinal Inflammation Targets E. Coli NC101 Transcriptome Response and Promotes Development of Colorectal Cancer (CRC) Gastroenterology. 144: S-144-S-145. DOI: 10.1016/S0016-5085(13)60520-X  0.225
2012 McCafferty J, Reid R, Spencer M, Hamp T, Fodor A. Peak Studio: a tool for the visualization and analysis of fragment analysis files. Environmental Microbiology Reports. 4: 556-61. PMID 23760901 DOI: 10.1111/J.1758-2229.2012.00368.X  0.221
2013 Zeisel SH, Waterland RA, Ordovás JM, Muoio DM, Jia W, Fodor A. Highlights of the 2012 Research Workshop: Using nutrigenomics and metabolomics in clinical nutrition research. Jpen. Journal of Parenteral and Enteral Nutrition. 37: 190-200. PMID 23042849 DOI: 10.1177/0148607112462401  0.221
2011 Araujo-Perez F, Sanapareddy N, McCoy AN, Jovov B, Benson AK, Abdo Z, Fodor A, Sandler RS, Keku TO. Mucosal Adherent Bacteria, Inflammation and Colorectal Adenomas Gastroenterology. 140: S-356. DOI: 10.1016/S0016-5085(11)61453-4  0.215
2016 Acosta A, Camilleri M, Shin A, Linker Nord S, O'Neill J, Gray AV, Lueke AJ, Donato LJ, Burton DD, Szarka LA, Zinsmeister AR, Golden PL, Fodor A. Effects of Rifaximin on Transit, Permeability, Fecal Microbiome, and Organic Acid Excretion in Irritable Bowel Syndrome. Clinical and Translational Gastroenterology. 7: e173. PMID 27228404 DOI: 10.1038/Ctg.2016.32  0.215
2016 Acosta A, Camilleri M, Shin A, Nord SL, O'Neill J, Gray AV, Lueke AJ, Donato LJ, Burton D, Szarka LA, Zinsmeister AR, Golden PL, Fodor A. Tu1793 Effects of Rifaximin on Transit, Permeability, Fecal Microbiome, and Organic Acid Excretion in Irritable Bowel Syndrome: A Randomized, Double-Blinded Trial Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)33204-8  0.212
2014 Fodor A, Gharaibeh R, Hamp T. On the inherent challenge of eliminating compositional artifacts in sparse 16S rRNA datasets F1000research. 5. DOI: 10.7490/F1000Research.1096825.1  0.212
2013 Einarsson G, McCaughan J, Fodor A, Wolfgang M, Tunney M, Elborn J. P103 Culture and culture independant identification of bacterial communities in the cystic fibrosis respiratory tract Thorax. 68: A121.1-A121. DOI: 10.1136/Thoraxjnl-2013-204457.253  0.21
2018 Lambirth K, Tsilimigras M, Lulla A, Johnson J, Al-Shaer A, Wynblatt O, Sypolt S, Brouwer C, Clinton S, Keen O, Redmond M, Fodor A, Gibas C. Microbial Community Composition and Antibiotic Resistance Genes within a North Carolina Urban Water System Water. 10: 1539. DOI: 10.20944/Preprints201809.0255.V1  0.208
2018 Thomas RM, Gharaibeh RZ, Gauthier J, Beveridge M, Pope JL, Guijarro MV, Yu Q, He Z, Ohland C, Newsome R, Trevino J, Hughes SJ, Reinhard M, Winglee K, Fodor AA, et al. Intestinal microbiota enhances pancreatic carcinogenesis in preclinical models. Carcinogenesis. PMID 29846515 DOI: 10.1093/carcin/bgy073  0.185
2013 McCafferty J, Mühlbauer M, Gharaibeh RZ, Arthur JC, Perez-Chanona E, Sha W, Jobin C, Fodor AA. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. The Isme Journal. 7: 2116-25. PMID 23823492 DOI: 10.1038/Ismej.2013.106  0.183
2024 Bhatt AP, Arnold JW, Awoniyi M, Sun S, Santiago VF, Quintela PH, Walsh K, Ngobeni R, Hansen B, Gulati A, Carroll IM, Azcarate-Peril MA, Fodor AA, Swann J, Bartelt LA. Giardia Antagonizes Beneficial Functions of Indigenous and Therapeutic Intestinal Bacteria during Malnutrition. Biorxiv : the Preprint Server For Biology. PMID 38328247 DOI: 10.1101/2024.01.22.575921  0.175
2017 Rogala AR, Schoenborn AA, Fee BE, Cantillana VA, Joyce MJ, Gharaibeh RZ, Roy S, Fodor AA, Sartor RB, Taylor GA, Gulati AS. Environmental factors regulate Paneth cell phenotype and host susceptibility to intestinal inflammation in Irgm1-deficient mice. Disease Models & Mechanisms. PMID 29361512 DOI: 10.1242/dmm.031070  0.173
2014 Arthur JC, Gharaibeh RZ, Mühlbauer M, Perez-Chanona E, Uronis JM, McCafferty J, Fodor AA, Jobin C. Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer. Nature Communications. 5: 4724. PMID 25182170 DOI: 10.1038/Ncomms5724  0.169
2020 Fouladi F, Glenny EM, Bulik-Sullivan EC, Tsilimigras MCB, Sioda M, Thomas SA, Wang Y, Djukic Z, Tang Q, Tarantino LM, Bulik CM, Fodor AA, Carroll IM. Sequence variant analysis reveals poor correlations in microbial taxonomic abundance between humans and mice after gnotobiotic transfer. The Isme Journal. PMID 32313261 DOI: 10.1038/S41396-020-0645-Z  0.164
2023 Bleich RM, Li C, Sun S, Barlogio CJ, Broberg CA, Franks AR, Bulik-Sullivan E, Dogan B, Simpson KW, Carroll IM, Fodor AA, Arthur JC. A consortia of clinical E. coli strains with distinct in-vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice. Research Square. PMID 37214858 DOI: 10.21203/rs.3.rs-2899665/v1  0.163
2014 Shanahan MT, Carroll IM, Grossniklaus E, White A, von Furstenberg RJ, Barner R, Fodor AA, Henning SJ, Sartor RB, Gulati AS. Mouse Paneth cell antimicrobial function is independent of Nod2. Gut. 63: 903-10. PMID 23512834 DOI: 10.1136/gutjnl-2012-304190  0.162
2012 Arthur JC, Perez-Chanona E, Mühlbauer M, Tomkovich S, Uronis JM, Fan TJ, Campbell BJ, Abujamel T, Dogan B, Rogers AB, Rhodes JM, Stintzi A, Simpson KW, Hansen JJ, Keku TO, ... Fodor AA, et al. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science (New York, N.Y.). 338: 120-3. PMID 22903521 DOI: 10.1126/Science.1224820  0.16
2013 Arthur JC, Gharaibeh RZ, Uronis JM, Perez-Chanona E, Sha W, Tomkovich S, Mühlbauer M, Fodor AA, Jobin C. VSL#3 probiotic modifies mucosal microbial composition but does not reduce colitis-associated colorectal cancer. Scientific Reports. 3: 2868. PMID 24100376 DOI: 10.1038/Srep02868  0.159
2012 Livesay DR, Kreth KE, Fodor AA. A critical evaluation of correlated mutation algorithms and coevolution within allosteric mechanisms. Methods in Molecular Biology (Clifton, N.J.). 796: 385-98. PMID 22052502 DOI: 10.1007/978-1-61779-334-9_21  0.157
2020 Tomkovich S, Gharaibeh RZ, Dejea CM, Pope JL, Jiang J, Winglee K, Gauthier J, Newsome RC, Yang Y, Fodor AA, Schmittgen TD, Sears CL, Jobin C. Human Colon Mucosal Biofilms and Murine Host Communicate via Altered mRNA and microRNA Expression during Cancer. Msystems. 5. PMID 31937674 DOI: 10.1128/mSystems.00451-19  0.156
2024 Gray SM, Moss AD, Herzog JW, Kashiwagi S, Liu B, Young JB, Sun S, Bhatt A, Fodor AA, Balfour Sartor R. Mouse Adaptation of Human Inflammatory Bowel Diseases Microbiota Enhances Colonization Efficiency and Alters Microbiome Aggressiveness Depending on Recipient Colonic Inflammatory Environment. Biorxiv : the Preprint Server For Biology. PMID 38328082 DOI: 10.1101/2024.01.23.576862  0.151
2023 Carter KA, Fodor AA, Balkus JE, Zhang A, Serrano MG, Buck GA, Engel SM, Wu MC, Sun S. Vaginal Microbiome Metagenome Inference Accuracy: Differential Measurement Error according to Community Composition. Msystems. e0100322. PMID 36975801 DOI: 10.1128/msystems.01003-22  0.149
2018 Jones RB, Fodor AA, Peery AF, Tsilimigras MCB, Winglee K, McCoy A, Sioda M, Sandler RS, Keku TO. An Aberrant Microbiota is not Strongly Associated with Incidental Colonic Diverticulosis. Scientific Reports. 8: 4951. PMID 29563543 DOI: 10.1038/S41598-018-23023-Z  0.146
2017 Tomkovich S, Yang Y, Winglee K, Gauthier J, Mühlbauer M, Sun X, Mohamadzadeh M, Liu X, Martin P, Wang GP, Oswald E, Fodor AA, Jobin C. Locoregional effects of microbiota in a preclinical model of colon carcinogenesis. Cancer Research. PMID 28416491 DOI: 10.1158/0008-5472.Can-16-3472  0.144
2015 Winglee K, Fodor AA. Intrinsic association between diet and the gut microbiome: current evidence. Nutrition and Dietary Supplements. 7: 69-76. PMID 28690398 DOI: 10.2147/NDS.S62362  0.142
2012 Fodor AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y, Hepburn T, Hu P, Sodergren E, Liolios K, Huot-Creasy H, Birren BW, Earl AM. The "most wanted" taxa from the human microbiome for whole genome sequencing. Plos One. 7: e41294. PMID 22848458 DOI: 10.1371/Journal.Pone.0041294  0.138
2009 Sanapareddy N, Hamp TJ, Gonzalez LC, Hilger HA, Fodor AA, Clinton SM. Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing. Applied and Environmental Microbiology. 75: 1688-96. PMID 19114525 DOI: 10.1128/Aem.01210-08  0.133
2020 Robles-Malagamba MJ, Walsh MT, Ahasan MS, Thompson P, Wells RS, Jobin C, Fodor AA, Winglee K, Waltzek TB. Characterization of the bacterial microbiome among free-ranging bottlenose dolphins (). Heliyon. 6: e03944. PMID 32577542 DOI: 10.1016/J.Heliyon.2020.E03944  0.132
2012 Sanapareddy N, Legge RM, Jovov B, McCoy A, Burcal L, Araujo-Perez F, Randall TA, Galanko J, Benson A, Sandler RS, Rawls JF, Abdo Z, Fodor AA, Keku TO. Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans. The Isme Journal. 6: 1858-68. PMID 22622349 DOI: 10.1038/Ismej.2012.43  0.129
2019 Tomkovich S, Dejea CM, Winglee K, Drewes JL, Chung L, Housseau F, Pope JL, Gauthier J, Sun X, Mühlbauer M, Liu X, Fathi P, Anders RA, Besharati S, Perez-Chanona E, ... ... Fodor AA, et al. Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic. The Journal of Clinical Investigation. 130. PMID 30855275 DOI: 10.1172/JCI124196  0.127
2020 Sun S, Jones RB, Fodor AA. Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories. Microbiome. 8: 46. PMID 32241293 DOI: 10.1186/s40168-020-00815-y  0.127
2021 Fouladi F, Young JB, Fodor AA. HashSeq: a Simple, Scalable, and Conservative Variant Caller for 16S rRNA Gene Data Sets. Msystems. e0069721. PMID 34751586 DOI: 10.1128/mSystems.00697-21  0.125
2022 Sun S, Wang H, Howard AG, Zhang J, Su C, Wang Z, Du S, Fodor AA, Gordon-Larsen P, Zhang B. Loss of Novel Diversity in Human Gut Microbiota Associated with Ongoing Urbanization in China. Msystems. e0020022. PMID 35727019 DOI: 10.1128/msystems.00200-22  0.125
2018 Fodor AA, Pimentel M, Chey WD, Lembo A, Golden PL, Israel RJ, Carroll IM. Rifaximin is associated with modest, transient decreases in multiple taxa in the gut microbiota of patients with diarrhoea-predominant irritable bowel syndrome. Gut Microbes. 1-28. PMID 29708822 DOI: 10.1080/19490976.2018.1460013  0.12
2024 Yerke A, Fry Brumit D, Fodor AA. Proportion-based normalizations outperform compositional data transformations in machine learning applications. Microbiome. 12: 45. PMID 38443997 DOI: 10.1186/s40168-023-01747-z  0.12
2018 Fan TJ, Tchaptchet SY, Arsene D, Mishima Y, Liu B, Sartor RB, Carroll IM, Miao EA, Fodor AA, Hansen JJ. Environmental Factors Modify the Severity of Acute DSS Colitis in Caspase-11-Deficient Mice. Inflammatory Bowel Diseases. 24: 2394-2403. PMID 30312415 DOI: 10.1093/ibd/izy244  0.119
2023 Bleich RM, Li C, Sun S, Ahn JH, Dogan B, Barlogio CJ, Broberg CA, Franks AR, Bulik-Sullivan E, Carroll IM, Simpson KW, Fodor AA, Arthur JC. A consortia of clinical E. coli strains with distinct in vitro adherent/invasive properties establish their own co-colonization niche and shape the intestinal microbiota in inflammation-susceptible mice. Microbiome. 11: 277. PMID 38124090 DOI: 10.1186/s40168-023-01710-y  0.118
2017 Kleiman SC, Glenny EM, Bulik-Sullivan EC, Huh EY, Tsilimigras MCB, Fodor AA, Bulik CM, Carroll IM. Daily Changes in Composition and Diversity of the Intestinal Microbiota in Patients with Anorexia Nervosa: A Series of Three Cases. European Eating Disorders Review : the Journal of the Eating Disorders Association. PMID 28586130 DOI: 10.1002/Erv.2524  0.118
2009 Hamp TJ, Jones WJ, Fodor AA. Effects of experimental choices and analysis noise on surveys of the "rare biosphere". Applied and Environmental Microbiology. 75: 3263-70. PMID 19270149 DOI: 10.1128/AEM.01931-08  0.117
2018 Wilson QN, Wells M, Davis AT, Sherrill C, Tsilimigras MCB, Jones RB, Fodor AA, Kavanagh K. Greater Microbial Translocation and Vulnerability to Metabolic Disease in Healthy Aged Female Monkeys. Scientific Reports. 8: 11373. PMID 30054517 DOI: 10.1038/s41598-018-29473-9  0.116
2023 Giallourou N, Arnold J, McQuade ETR, Awoniyi M, Becket RVT, Walsh K, Herzog J, Gulati AS, Carroll IM, Montgomery S, Quintela PH, Faust AM, Singer SM, Fodor AA, Ahmad T, et al. Giardia hinders growth by disrupting nutrient metabolism independent of inflammatory enteropathy. Nature Communications. 14: 2840. PMID 37202423 DOI: 10.1038/s41467-023-38363-2  0.116
2020 Wang Y, Wang H, Howard AG, Tsilimigras MCB, Avery CL, Meyer KA, Sha W, Sun S, Zhang J, Su C, Wang Z, Zhang B, Fodor AA, Gordon-Larsen P. Associations of sodium and potassium consumption with the gut microbiota and host metabolites in a population-based study in Chinese adults. The American Journal of Clinical Nutrition. PMID 33022700 DOI: 10.1093/ajcn/nqaa263  0.115
2015 Stokell JR, Gharaibeh RZ, Hamp TJ, Zapata MJ, Fodor AA, Steck TR. Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period. Journal of Clinical Microbiology. 53: 237-47. PMID 25392361 DOI: 10.1128/Jcm.02555-14  0.112
2011 Spencer MD, Hamp TJ, Reid RW, Fischer LM, Zeisel SH, Fodor AA. Association between composition of the human gastrointestinal microbiome and development of fatty liver with choline deficiency. Gastroenterology. 140: 976-86. PMID 21129376 DOI: 10.1053/j.gastro.2010.11.049  0.112
2012 Fodor AA, Klem ER, Gilpin DF, Elborn JS, Boucher RC, Tunney MM, Wolfgang MC. The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations. Plos One. 7: e45001. PMID 23049765 DOI: 10.1371/Journal.Pone.0045001  0.111
2022 Sun S, Blakley IC, Fodor AA, Keku TO, Woosley JT, Peery AF, Sandler RS. Microbial Associations with Microscopic Colitis. Clinical and Translational Gastroenterology. PMID 36094869 DOI: 10.14309/ctg.0000000000000528  0.109
2019 Sun S, Lulla A, Sioda M, Winglee K, Wu MC, Jacobs DR, Shikany JM, Lloyd-Jones DM, Launer LJ, Fodor AA, Meyer KA. Gut Microbiota Composition and Blood Pressure. Hypertension (Dallas, Tex. : 1979). HYPERTENSIONAHA11812. PMID 30905192 DOI: 10.1161/Hypertensionaha.118.12109  0.107
2019 Ellermann M, Gharaibeh RZ, Maharshak N, Peréz-Chanona E, Jobin C, Carroll IM, Arthur JC, Plevy SE, Fodor AA, Brouwer CR, Sartor RB. Dietary iron variably modulates assembly of the intestinal microbiota in colitis-resistant and colitis-susceptible mice. Gut Microbes. 1-19. PMID 31179826 DOI: 10.1080/19490976.2019.1599794  0.107
2020 Sun S, Wang H, Tsilimigras MC, Howard AG, Sha W, Zhang J, Su C, Wang Z, Du S, Sioda M, Fouladi F, Fodor A, Gordon-Larsen P, Zhang B. Does geographical variation confound the relationship between host factors and the human gut microbiota: a population-based study in China. Bmj Open. 10: e038163. PMID 33444181 DOI: 10.1136/bmjopen-2020-038163  0.107
2022 Fouladi F, Bulik-Sullivan EC, Glenny EM, Thornton LM, Reed KK, Thomas S, Kleiman S, Watters A, Oakes J, Huh EY, Tang Q, Liu J, Djukic Z, Harper L, Trillo-Ordoñez Y, ... ... Fodor AA, et al. Reproducible changes in the anorexia nervosa gut microbiota following inpatient therapy remain distinct from non-eating disorder controls. Gut Microbes. 14: 2143217. PMID 36398862 DOI: 10.1080/19490976.2022.2143217  0.106
2016 Lyte M, Fodor AA, Chapman CD, Martin GG, Perez-Chanona E, Jobin C, Dess NK. Gut Microbiota and a Selectively Bred Taste Phenotype: A Novel Model of Microbiome-Behavior Relationships. Psychosomatic Medicine. PMID 27035357 DOI: 10.1097/PSY.0000000000000318  0.106
2016 Tsilimigras MC, Fodor AA. Compositional data analysis of the microbiome: fundamentals, tools, and challenges. Annals of Epidemiology. 26: 330-5. PMID 27255738 DOI: 10.1016/j.annepidem.2016.03.002  0.105
2021 Sun S, Zhu X, Huang X, Murff HJ, Ness RM, Seidner DL, Sorgen AA, Blakley IC, Yu C, Dai Q, Azcarate-Peril MA, Shrubsole MJ, Fodor AA. On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples. Scientific Reports. 11: 14828. PMID 34290321 DOI: 10.1038/s41598-021-94205-5  0.104
2021 Wang P, Zhang S, Yerke A, Ohland CL, Gharaibeh RZ, Fouladi F, Fodor AA, Jobin C, Sang S. Avenanthramide Metabotype from Whole-Grain Oat Intake is Influenced by Faecalibacterium prausnitzii in Healthy Adults. The Journal of Nutrition. PMID 33694368 DOI: 10.1093/jn/nxab006  0.103
2017 Sinha R, Abu-Ali G, Vogtmann E, Fodor AA, Ren B, Amir A, Schwager E, Crabtree J, Ma S, Abnet CC, Knight R, White O, Huttenhower C. Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium. Nature Biotechnology. PMID 28967885 DOI: 10.1038/Nbt.3981  0.103
2023 Diallo D, Sun S, Somboro AM, Baya B, Kone A, Diarra B, Nantoume M, Koloma I, Diakite M, Holl J, Maiga AI, Seydi M, Theron G, Hou L, Fodor A, et al. Metabolic and Immune Consequences of Antibiotic Related Microbiome Alterations during first-line Tuberculosis Treatment in Bamako, Mali. Research Square. PMID 37609282 DOI: 10.21203/rs.3.rs-3232670/v1  0.099
2020 Wang Y, Wang H, Howard AG, Tsilimigras MCB, Avery CL, Meyer KA, Sha W, Sun S, Zhang J, Su C, Wang Z, Fodor AA, Zhang B, Gordon-Larsen P. Gut Microbiota and Host Plasma Metabolites in Association with Blood Pressure in Chinese Adults. Hypertension (Dallas, Tex. : 1979). HYPERTENSIONAHA12016. PMID 33342240 DOI: 10.1161/HYPERTENSIONAHA.120.16154  0.099
2023 Zeng K, Brewster R, Kang JB, Tkachenko E, Brooks E, Bhatt AS, Fodor AA, Andermann TM. Acute steroid-refractory GI GVHD is not associated with significant differences in gut taxonomic composition compared to steroid-sensitive GI GVHD immediately prior to onset of disease: GI GVHD is not characterized by gut microbial differences preceding symptom onset. Transplantation and Cellular Therapy. PMID 37944820 DOI: 10.1016/j.jtct.2023.11.006  0.098
2022 Simpson JB, Sekela JJ, Graboski AL, Borlandelli VB, Bivins MM, Barker NK, Sorgen AA, Mordant AL, Johnson RL, Bhatt AP, Fodor AA, Herring LE, Overkleeft H, Lee JR, Redinbo MR. Metagenomics combined with activity-based proteomics point to gut bacterial enzymes that reactivate mycophenolate. Gut Microbes. 14: 2107289. PMID 35953888 DOI: 10.1080/19490976.2022.2107289  0.096
2023 Busing JD, Fouladi F, Bulik-Sullivan EC, Carroll IM, Fodor AA, Thomsen KF, Gulati AS, Nicholson MR. Gut Microbial Changes Following Fecal Microbiota Transplantation for D-Lactic Acidosis in Two Children. Jpgn Reports. 4: e319. PMID 37600604 DOI: 10.1097/PG9.0000000000000319  0.094
2020 Fouladi F, Bailey MJ, Patterson WB, Sioda M, Blakley IC, Fodor AA, Jones RB, Chen Z, Kim JS, Lurmann F, Martino C, Knight R, Gilliland FD, Alderete TL. Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing. Environment International. 138: 105604. PMID 32135388 DOI: 10.1016/J.Envint.2020.105604  0.091
2017 Winglee K, Howard AG, Sha W, Gharaibeh RZ, Liu J, Jin D, Fodor AA, Gordon-Larsen P. Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes. Microbiome. 5: 121. PMID 28915922 DOI: 10.1186/S40168-017-0338-7  0.09
2018 Jones RB, Zhu X, Moan E, Murff HJ, Ness RM, Seidner DL, Sun S, Yu C, Dai Q, Fodor AA, Azcarate-Peril MA, Shrubsole MJ. Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples. Scientific Reports. 8: 4139. PMID 29515151 DOI: 10.1038/s41598-018-22408-4  0.09
2010 Lightfoot JT, Leamy L, Pomp D, Turner MJ, Fodor AA, Knab A, Bowen RS, Ferguson D, Moore-Harrison T, Hamilton A. Strain screen and haplotype association mapping of wheel running in inbred mouse strains. Journal of Applied Physiology (Bethesda, Md. : 1985). 109: 623-34. PMID 20538847 DOI: 10.1152/Japplphysiol.00525.2010  0.09
2022 Tsan L, Chometton S, Hayes AM, Klug ME, Zuo Y, Sun S, Bridi L, Lan R, Fodor AA, Noble EE, Yang X, Kanoski SE, Schier LA. Early life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats. Jci Insight. PMID 36099052 DOI: 10.1172/jci.insight.157714  0.088
2021 Fouladi F, Carroll IM, Sharpton TJ, Bulik-Sullivan E, Heinberg L, Steffen KJ, Fodor AA. A microbial signature following bariatric surgery is robustly consistent across multiple cohorts. Gut Microbes. 13: 1930872. PMID 34159880 DOI: 10.1080/19490976.2021.1930872  0.087
2021 Sorgen A, Johnson J, Lambirth K, Clinton SM, Redmond M, Fodor A, Gibas C. Characterization of Environmental and Cultivable Antibiotic-Resistant Microbial Communities Associated with Wastewater Treatment. Antibiotics (Basel, Switzerland). 10. PMID 33810449 DOI: 10.3390/antibiotics10040352  0.078
2021 Andermann TM, Fouladi F, Tamburini FB, Sahaf B, Tkachenko E, Greene C, Buckley MT, Brooks EF, Hedlin H, Arai S, Mackall CL, Miklos D, Negrin RS, Fodor AA, Rezvani AR, et al. A fructo-oligosaccharide prebiotic is well-tolerated in adults undergoing allogeneic hematopoietic stem cell transplantation: a phase I dose-escalation trial. Transplantation and Cellular Therapy. PMID 34274493 DOI: 10.1016/j.jtct.2021.07.009  0.077
2023 Sandler RS, Sun S, Keku TO, Woosley JT, Anderson C, Peery AF, Fodor A. Dietary Calcium and Risk of Microscopic Colitis. Clinical and Translational Gastroenterology. 14: e00569. PMID 37377217 DOI: 10.14309/ctg.0000000000000569  0.074
2017 Kleiman SC, Bulik-Sullivan EC, Glenny EM, Zerwas SC, Huh EY, Tsilimigras MC, Fodor AA, Bulik CM, Carroll IM. The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures. Plos One. 12: e0170208. PMID 28103291 DOI: 10.1371/Journal.Pone.0170208  0.074
2012 Huse SM, Ye Y, Zhou Y, Fodor AA. A core human microbiome as viewed through 16S rRNA sequence clusters. Plos One. 7: e34242. PMID 22719824 DOI: 10.1371/journal.pone.0034242  0.074
2023 Park S, Belfoul AM, Rastelli M, Jang A, Monnoye M, Bae H, Kamitakahara A, Giavalisco P, Sun S, Barelle PY, Plows J, Jang C, Fodor A, Goran MI, Bouret SG. Maternal low-calorie sweeteners consumption rewires hypothalamic melanocortin circuits via a gut microbial co-metabolite pathway. Jci Insight. PMID 37014702 DOI: 10.1172/jci.insight.156397  0.073
2022 Ling W, Lu J, Zhao N, Lulla A, Plantinga AM, Fu W, Zhang A, Liu H, Song H, Li Z, Chen J, Randolph TW, Koay WLA, White JR, Launer LJ, ... Fodor AA, et al. Batch effects removal for microbiome data via conditional quantile regression. Nature Communications. 13: 5418. PMID 36109499 DOI: 10.1038/s41467-022-33071-9  0.073
2021 Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, Loughman A, Marques FZ, MacIntyre DA, Arumugam M, Azhar R, ... ... Fodor AA, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. PMID 34789871 DOI: 10.1038/s41591-021-01552-x  0.073
2022 Severyn CJ, Siranosian BA, Kong ST, Moreno A, Li MM, Chen N, Duncan CN, Margossian SP, Lehmann LE, Sun S, Andermann TM, Birbrayer O, Silverstein S, Kim S, Banaei N, ... ... Fodor AA, et al. Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation. Jci Insight. PMID 35239511 DOI: 10.1172/jci.insight.154344  0.072
2014 Hanna EM, Hamp TJ, McKillop IH, Bahrani-Mougeot F, Martinie JB, Horton JM, Sindram D, Gharaibeh RZ, Fodor AA, Iannitti DA. Comparison of culture and molecular techniques for microbial community characterization in infected necrotizing pancreatitis. The Journal of Surgical Research. 191: 362-9. PMID 24952411 DOI: 10.1016/J.Jss.2014.05.003  0.071
2024 Hayes AMR, Lauer LT, Kao AE, Sun S, Klug ME, Tsan L, Rea JJ, Subramanian KS, Gu C, Tanios N, Ahuja A, Donohue KN, Décarie-Spain L, Fodor AA, Kanoski SE. Western diet consumption impairs memory function via dysregulated hippocampus acetylcholine signaling. Brain, Behavior, and Immunity. PMID 38461956 DOI: 10.1016/j.bbi.2024.03.015  0.07
2022 Sun S, Serrano MG, Fettweis JM, Basta P, Rosen E, Ludwig K, Sorgen AA, Blakley IC, Wu MC, Dole N, Thorp JM, Siega-Riz AM, Buck GA, Fodor AA, Engel SM. Race, the Vaginal Microbiome, and Spontaneous Preterm Birth. Msystems. e0001722. PMID 35582911 DOI: 10.1128/msystems.00017-22  0.069
2021 Tsan L, Sun S, Hayes AMR, Bridi L, Chirala LS, Noble EE, Fodor AA, Kanoski SE. Early life Western diet-induced memory impairments and gut microbiome changes in female rats are long-lasting despite healthy dietary intervention. Nutritional Neuroscience. 1-17. PMID 34565305 DOI: 10.1080/1028415X.2021.1980697  0.068
2021 Ling W, Zhao N, Plantinga AM, Launer LJ, Fodor AA, Meyer KA, Wu MC. Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach (ZINQ). Microbiome. 9: 181. PMID 34474689 DOI: 10.1186/s40168-021-01129-3  0.068
2007 Gharaibeh RZ, Fodor AA, Gibas CJ. Software note: using probe secondary structure information to enhance Affymetrix GeneChip background estimates. Computational Biology and Chemistry. 31: 92-8. PMID 17387043 DOI: 10.1016/j.compbiolchem.2007.02.008  0.067
2020 Wang Y, Wang H, Howard AG, Meyer KA, Tsilimigras MCB, Avery CL, Sha W, Sun S, Zhang J, Su C, Wang Z, Zhang B, Fodor AA, Gordon-Larsen P. Circulating Short-Chain Fatty Acids Are Positively Associated with Adiposity Measures in Chinese Adults. Nutrients. 12. PMID 32708978 DOI: 10.3390/Nu12072127  0.067
2008 Reid RW, Fodor AA. Determining gene expression on a single pair of microarrays. Bmc Bioinformatics. 9: 489. PMID 19025600 DOI: 10.1186/1471-2105-9-489  0.066
2023 Hayes AMR, Lauer LT, Kao AE, Sun S, Klug ME, Tsan L, Rea JJ, Subramanian KS, Gu C, Tanios N, Ahuja A, Donohue KN, Décarie-Spain L, Fodor AA, Kanoski SE. Western diet consumption impairs memory function via dysregulated hippocampus acetylcholine signaling. Biorxiv : the Preprint Server For Biology. PMID 37546790 DOI: 10.1101/2023.07.21.550120  0.066
2023 Sorgen AA, Fodor AA, Steffen KJ, Carroll IM, Bond DS, Crosby R, Heinberg LJ. Longer-Term Weight Loss Outcomes Are Not Primarily Driven by Diet Following Roux-en-Y Gastric Bypass and Sleeve Gastrectomy. Nutrients. 15. PMID 37571260 DOI: 10.3390/nu15153323  0.065
2007 Fodor AA, Tickle TL, Richardson C. Towards the uniform distribution of null P values on Affymetrix microarrays. Genome Biology. 8: R69. PMID 17472745 DOI: 10.1186/Gb-2007-8-5-R69  0.063
2021 Rosen EM, Martin CL, Siega-Riz AM, Dole N, Basta PV, Serrano M, Fettweis J, Wu M, Sun S, Thorp JM, Buck G, Fodor AA, Engel SM. Is prenatal diet associated with the composition of the vaginal microbiome? Paediatric and Perinatal Epidemiology. PMID 34841560 DOI: 10.1111/ppe.12830  0.063
2013 Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM. Dietary fructose induces endotoxemia and hepatic injury in calorically controlled primates. The American Journal of Clinical Nutrition. 98: 349-57. PMID 23783298 DOI: 10.3945/ajcn.112.057331  0.063
2021 Loeser RF, Arbeeva L, Kelley K, Fodor AA, Sun S, Ulici V, Longobardi L, Cui Y, Stewart DA, Sumner SJ, Azcarate-Peril MA, Sartor RB, Carroll IM, Renner JB, Jordan JM, et al. Association of Increased Serum Lipopolysaccharide but not Microbial Dysbiosis with Obesity-related Osteoarthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 34423918 DOI: 10.1002/art.41955  0.06
2018 Spencer MD, Winglee K, Passaretti C, Earl AM, Manson AL, Mulder HP, Sautter RL, Fodor AA. Whole Genome Sequencing detects Inter-Facility Transmission of Carbapenem-resistant Klebsiella pneumoniae. The Journal of Infection. PMID 30503842 DOI: 10.1016/J.Jinf.2018.11.003  0.06
2016 Noble EE, Hsu TM, Jones RB, Fodor AA, Goran MI, Kanoski SE. Early-Life Sugar Consumption Affects the Rat Microbiome Independently of Obesity. The Journal of Nutrition. PMID 27903830 DOI: 10.3945/Jn.116.238816  0.059
2019 Fouladi F, Brooks AE, Fodor AA, Carroll IM, Bulik-Sullivan EC, Tsilimigras MCB, Sioda M, Steffen KJ. The Role of the Gut Microbiota in Sustained Weight Loss Following Roux-en-Y Gastric Bypass Surgery. Obesity Surgery. PMID 30604078 DOI: 10.1007/S11695-018-03653-Y  0.059
2008 Gharaibeh RZ, Fodor AA, Gibas CJ. Background correction using dinucleotide affinities improves the performance of GCRMA. Bmc Bioinformatics. 9: 452. PMID 18947404 DOI: 10.1186/1471-2105-9-452  0.059
2018 Bajorek S, Parker L, Li N, Winglee K, Weaver M, Johnson J, Sioda M, Gauthier J, Lemas DJ, Jobin C, Lorca G, Neu J, Fodor AA. Initial microbial community of the neonatal stomach immediately after birth. Gut Microbes. 1-9. PMID 30404568 DOI: 10.1080/19490976.2018.1520578  0.057
2019 Kleiman SC, Bulik-Sullivan EC, Glenny EM, Zerwas SC, Huh EY, Tsilimigras MCB, Fodor AA, Bulik CM, Carroll IM. Correction: The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures. Plos One. 14: e0221724. PMID 31437250 DOI: 10.1371/journal.pone.0221724  0.057
2010 Gharaibeh RZ, Fodor AA, Gibas CJ. Accurate estimates of microarray target concentration from a simple sequence-independent Langmuir model. Plos One. 5: e14464. PMID 21209932 DOI: 10.1371/journal.pone.0014464  0.054
2023 Camp K, Coleman MF, McFarlane T, Doerstling SS, Khatib SA, Rezeli ET, Lewis AG, Pfeil AJ, Smith LA, Bowers LW, Fouladi F, Gong W, Glenny EM, Parker JS, Milne GL, ... ... Fodor AA, et al. Calorie restriction outperforms bariatric surgery in a murine model of obesity and triple-negative breast cancer. Jci Insight. PMID 37698918 DOI: 10.1172/jci.insight.172868  0.052
2018 Tsilimigras MCB, Gharaibeh RZ, Sioda M, Gray L, Fodor AA, Lyte M. Interactions between stress and sex in microbial responses within the microbiota-gut-brain axis to stress in a mouse model. Psychosomatic Medicine. PMID 29533327 DOI: 10.1097/PSY.0000000000000572  0.05
2021 Johnson J, Dellon E, McCoy AN, Sun S, Jensen ET, Fodor AA, Keku TO. Lack of association of the esophageal microbiome in adults with eosinophilic esophagitis compared with non-EoE controls. Journal of Gastrointestinal and Liver Diseases : Jgld. 30: 17-24. PMID 33723541 DOI: 10.15403/jgld-3049  0.046
2020 Wang Y, Sha W, Wang H, Howard AG, Tsilimigras MCB, Zhang J, Su C, Wang Z, Zhang B, Fodor AA, Gordon-Larsen P. Urbanization in China is associated with pronounced perturbation of plasma metabolites. Metabolomics : Official Journal of the Metabolomic Society. 16: 103. PMID 32951074 DOI: 10.1007/S11306-020-01724-9  0.046
2022 Tsan L, Chometton S, Hayes AM, Klug ME, Zuo Y, Sun S, Bridi L, Lan R, Fodor AA, Noble EE, Yang X, Kanoski SE, Schier LA. Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats. Jci Insight. 7. PMID 36546482 DOI: 10.1172/jci.insight.167266  0.045
2011 Talley NJ, Fodor AA. Bugs, stool, and the irritable bowel syndrome: too much is as bad as too little? Gastroenterology. 141: 1555-9. PMID 21945058 DOI: 10.1053/j.gastro.2011.09.019  0.041
2020 Jaiswal YS, Yerke AM, Bagley MC, Ekelöf M, Weber D, Haddad D, Fodor A, Muddiman DC, Williams LL. 3D Imaging and metabolomic profiling reveal higher neuroactive kavalactone contents in lateral roots and crown root peels of Piper methysticum (kava). Gigascience. 9. PMID 32960942 DOI: 10.1093/gigascience/giaa096  0.041
2022 Fan L, Zhu X, Sun S, Yu C, Huang X, Ness R, Dugan LL, Shu L, Seidner DL, Murff HJ, Fodor AA, Azcarate-Peril MA, Shrubsole MJ, Dai Q. Ca:Mg ratio, medium-chain fatty acids, and the gut microbiome. Clinical Nutrition (Edinburgh, Scotland). 41: 2490-2499. PMID 36223712 DOI: 10.1016/j.clnu.2022.08.031  0.041
2022 Lenfestey MW, Li N, Gauthier J, Winglee K, Fodor A, Zeng K, Jobin C, Neu J, Parker LA. Effect of Routine Gastric Residual Aspiration on the Preterm Infant Fecal Microbiome. American Journal of Perinatology. PMID 35709728 DOI: 10.1055/a-1877-6306  0.04
2013 Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM. Reply to JS White. The American Journal of Clinical Nutrition. 98: 1370. PMID 24142242 DOI: 10.3945/ajcn.113.072264  0.023
2014 Kavanagh K, Wylie AT, Tucker KL, Hamp TJ, Gharaibeh RZ, Fodor AA, Cullen JM. Reply to KN Litwak and S Levin. The American Journal of Clinical Nutrition. 99: 210. PMID 24363257 DOI: 10.3945/ajcn.113.074633  0.01
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