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Daren C. Card - Publications

Affiliations: 
University of Texas at Arlington, Arlington, TX, United States 
Area:
Evolutionary Biology, Genomics
Website:
http://www.darencard.net
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Farleigh K, Ascanio A, Farleigh ME, Schield DR, Card DC, Leal M, Castoe TA, Jezkova T, Rodríguez-Robles JA. Signals of differential introgression in the genome of natural hybrids of Caribbean anoles. Molecular Ecology. 32: 6000-6017. PMID 37861454 DOI: 10.1111/mec.17170  0.673
2023 Card DC, Jennings WB, Edwards SV. Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles. Animals : An Open Access Journal From Mdpi. 13. PMID 36766360 DOI: 10.3390/ani13030471  0.469
2022 Card DC, Van Camp AG, Santonastaso T, Jensen-Seaman MI, Anthony NM, Edwards SV. Structure and evolution of the squamate major histocompatibility complex as revealed by two lizard genomes. Frontiers in Genetics. 13: 979746. PMID 36425073 DOI: 10.3389/fgene.2022.979746  0.376
2022 Schield DR, Perry BW, Card DC, Pasquesi GIM, Westfall AK, Mackessy SP, Castoe TA. The rattlesnake W chromosome: A GC-rich retroelement refugium with retained gene function across ancient evolutionary strata. Genome Biology and Evolution. PMID 35867356 DOI: 10.1093/gbe/evac116  0.59
2022 Koochekian N, Ascanio A, Farleigh K, Card DC, Schield DR, Castoe TA, Jezkova T. A chromosome-level genome assembly and annotation of the desert horned lizard, Phrynosoma platyrhinos, provides insight into chromosomal rearrangements among reptiles. Gigascience. 11. PMID 35134927 DOI: 10.1093/gigascience/giab098  0.651
2021 Card DC, Shapiro B, Giribet G, Moritz C, Edwards SV. Museum Genomics. Annual Review of Genetics. PMID 34555285 DOI: 10.1146/annurev-genet-071719-020506  0.413
2021 Farleigh K, Vladimirova SA, Blair C, Bracken JT, Koochekian N, Schield DR, Card DC, Finger N, Henault J, Leaché AD, Castoe TA, Jezkova T. The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos). Molecular Ecology. PMID 34245067 DOI: 10.1111/mec.16070  0.601
2021 Card DC, Vonk FJ, Smalbrugge S, Casewell NR, Wüster W, Castoe TA, Schuett GW, Booth W. Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis. Scientific Reports. 11: 7271. PMID 33790309 DOI: 10.1038/s41598-021-86373-1  0.675
2020 Kazi MI, Perry BW, Card DC, Schargel RD, Ali HB, Obuekwe VC, Sapkota M, Kang KN, Pellegrino MW, Greenberg DE, Castoe TA, Boll JM. Discovery and characterization of New Delhi metallo-β-lactamase-1 inhibitor peptides that potentiate meropenem-dependent killing of carbapenemase-producing Enterobacteriaceae. The Journal of Antimicrobial Chemotherapy. PMID 32591801 DOI: 10.1093/Jac/Dkaa242  0.522
2019 Casewell NR, Petras D, Card DC, Suranse V, Mychajliw AM, Richards D, Koludarov I, Albulescu LO, Slagboom J, Hempel BF, Ngum NM, Kennerley RJ, Brocca JL, Whiteley G, Harrison RA, et al. Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772017 DOI: 10.1073/Pnas.1906117116  0.68
2019 Card DC, Adams RH, Schield DR, Perry BW, Corbin AB, Pasquesi GIM, Row K, Van Kleeck MJ, Daza JM, Booth W, Montgomery CE, Boback SM, Castoe TA. Genomic basis of convergent island phenotypes in boa constrictors. Genome Biology and Evolution. PMID 31642474 DOI: 10.1093/Gbe/Evz226  0.715
2019 Perry BW, Andrew AL, Mostafa Kamal AH, Card DC, Schield DR, Pasquesi GIM, Pellegrino MW, Mackessy SP, Chowdhury SM, Secor SM, Castoe TA. Multi-species comparisons of snakes identify coordinated signalling networks underlying post-feeding intestinal regeneration. Proceedings. Biological Sciences. 286: 20190910. PMID 31288694 DOI: 10.1098/Rspb.2019.0910  0.599
2019 Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV. Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180248. PMID 31154982 DOI: 10.1098/Rstb.2018.0248  0.55
2019 Schield DR, Card DC, Hales NR, Perry BW, Pasquesi GM, Blackmon H, Adams RH, Corbin AB, Smith CF, Ramesh B, Demuth JP, Betrán E, Tollis M, Meik JM, Mackessy SP, et al. The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes. Genome Research. PMID 30898880 DOI: 10.1101/Gr.240952.118  0.708
2019 Pinto BJ, Card DC, Castoe TA, Diaz RE, Nielsen SV, Trainor PA, Gamble T. The transcriptome of the Veiled Chameleon (Chamaeleo calyptratus): a resource for studying the evolution and development of vertebrates. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 30839129 DOI: 10.1002/Dvdy.20  0.648
2019 Schield DR, Perry BW, Adams RH, Card DC, Jezkova T, Pasquesi GIM, Nikolakis ZL, Row K, Meik JM, Smith CF, Mackessy SP, Castoe TA. Allopatric divergence and secondary contact with gene flow: a recurring theme in rattlesnake speciation Biological Journal of the Linnean Society. 128: 149-169. DOI: 10.1093/Biolinnean/Blz077  0.655
2018 Card DC, Perry BW, Adams RH, Schield DR, Young AS, Andrew AL, Jezkova T, Pasquesi GIM, Hales NR, Walsh MR, Rochford MR, Mazzotti FJ, Hart KM, Hunter ME, Castoe TA. Novel ecological and climatic conditions drive rapid adaptation in invasive Florida Burmese pythons. Molecular Ecology. PMID 30269397 DOI: 10.1111/Mec.14885  0.69
2018 Perry BW, Card DC, McGlothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Hoffmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, et al. Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome. Genome Biology and Evolution. PMID 30060036 DOI: 10.1093/Gbe/Evy157  0.832
2018 Pasquesi GIM, Adams RH, Card DC, Schield DR, Corbin AB, Perry BW, Reyes-Velasco J, Ruggiero RP, Vandewege MW, Shortt JA, Castoe TA. Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals. Nature Communications. 9: 2774. PMID 30018307 DOI: 10.1038/S41467-018-05279-1  0.815
2018 Schield DR, Adams RH, Card DC, Corbin AB, Jezkova T, Hales NR, Meik JM, Perry BW, Spencer CL, Smith LL, Campillo García G, Bouzid NM, Strickland JL, Parkinson CL, Borja M, et al. Cryptic genetic diversity, population structure, and gene flow in the Mojave rattlesnake (Crotalus scutulatus). Molecular Phylogenetics and Evolution. PMID 29902574 DOI: 10.1016/J.Ympev.2018.06.013  0.731
2018 Schott RK, Van Nynatten A, Card DC, Castoe TA, S W Chang B. Shifts in Selective Pressures on Snake Phototransduction Genes Associated with Photoreceptor Transmutation and Dim-Light Ancestry. Molecular Biology and Evolution. 35: 1376-1389. PMID 29800394 DOI: 10.1093/Molbev/Msy025  0.674
2018 Adams RH, Schield DR, Card DC, Castoe TA. Assessing the impacts of positive selection on coalescent-based species tree estimation and species delimitation. Systematic Biology. PMID 29757422 DOI: 10.1093/Sysbio/Syy034  0.602
2018 Card DC, Schield DR, Castoe TA. Plasticity and local adaptation explain lizard cold tolerance. Molecular Ecology. 27: 2173-2175. PMID 29737602 DOI: 10.1111/Mec.14575  0.636
2017 Adams RH, Schield DR, Card DC, Corbin A, Castoe TA. ThetaMater: Bayesian estimation of population size parameter θ from genomic data. Bioinformatics (Oxford, England). PMID 29194472 DOI: 10.1093/Bioinformatics/Btx733  0.634
2017 Gamble T, Castoe TA, Nielsen SV, Banks JL, Card DC, Schield DR, Schuett GW, Booth W. The Discovery of XY Sex Chromosomes in a Boa and Python. Current Biology : Cb. 27: 2148-2153.e4. PMID 28690112 DOI: 10.1016/J.Cub.2017.06.010  0.599
2017 Hales NR, Schield DR, Andrew AL, Card DC, Walsh MR, Castoe TA. Contrasting gene expression programs correspond with predator-induced phenotypic plasticity within and across-generations in Daphnia. Molecular Ecology. PMID 28628257 DOI: 10.1111/Mec.14213  0.618
2017 Schield DR, Adams RH, Card DC, Perry BW, Pasquesi GM, Jezkova T, Portik DM, Andrew AL, Spencer CL, Sanchez EE, Fujita MK, Mackessy SP, Castoe TA. Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes. Ecology and Evolution. 7: 3951-3966. PMID 28616190 DOI: 10.1002/Ece3.2996  0.727
2017 Andrew AL, Perry BW, Card DC, Schield DR, Ruggiero RP, McGaugh SE, Choudhary A, Secor SM, Castoe TA. Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python. Bmc Genomics. 18: 338. PMID 28464824 DOI: 10.1186/S12864-017-3743-1  0.59
2017 Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA. GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data. Bioinformatics (Oxford, England). 33: 1414-1415. PMID 28453670 DOI: 10.1093/Bioinformatics/Btw795  0.682
2017 Cox RM, Cox CL, McGlothlin JW, Card DC, Andrew AL, Castoe TA. Hormonally Mediated Increases in Sex-Biased Gene Expression Accompany the Breakdown of Between-Sex Genetic Correlations in a Sexually Dimorphic Lizard. The American Naturalist. 189: 315-332. PMID 28221827 DOI: 10.1086/690105  0.606
2017 Schott RK, Panesar B, Card DC, Preston M, Castoe TA, Chang BS. Targeted capture of complete coding regions across divergent species. Genome Biology and Evolution. PMID 28137744 DOI: 10.1093/Gbe/Evx005  0.652
2017 Shortt JA, Card DC, Schield DR, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DD. Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia. Plos Neglected Tropical Diseases. 11: e0005292. PMID 28107347 DOI: 10.1371/Journal.Pntd.0005292  0.759
2017 Lotterhos KE, Card DC, Schaal SM, Wang L, Collins C, Verity B. Composite measures of selection can improve the signal‐to‐noise ratio in genome scans Methods in Ecology and Evolution. 8: 717-727. DOI: 10.1111/2041-210X.12774  0.419
2016 Adams RH, Schield DR, Card DC, Blackmon H, Castoe TA. GppFst: Genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data. Bioinformatics (Oxford, England). PMID 28011784 DOI: 10.1093/bioinformatics/btw795  0.652
2016 Verity R, Collins C, Card DC, Schaal SM, Wang L, Lotterhos KE. Minotaur: A platform for the analysis and visualization of multivariate results from genome scans with R Shiny. Molecular Ecology Resources. PMID 27473028 DOI: 10.1111/1755-0998.12579  0.464
2016 Streicher JW, McEntee JP, Drzich LC, Card DC, Schield DR, Smart U, Parkinson CL, Jezkova T, Smith EN, Castoe TA. Genetic surfing, not allopatric divergence, explains spatial sorting of mitochondrial haplotypes in venomous coralsnakes. Evolution; International Journal of Organic Evolution. PMID 27251954 DOI: 10.1111/Evo.12967  0.713
2016 Card DC, Schield DR, Adams RH, Corbin AB, Perry BW, Andrew AL, Pasquesi GI, Smith EN, Jezkova T, Boback SM, Booth W, Castoe TA. Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism. Molecular Phylogenetics and Evolution. PMID 27241629 DOI: 10.1016/J.Ympev.2016.05.034  0.675
2016 Adams RH, Blackmon H, Reyes-Velasco J, Schield DR, Card DC, Andrew AL, Waynewood N, Castoe TA. Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution. Genome / National Research Council Canada = Genome / Conseil National De Recherches Canada. 1-16. PMID 27064176 DOI: 10.1139/Gen-2015-0124  0.824
2015 Andrew AL, Card DC, Ruggiero RP, Schield DR, Adams RH, Pollock DD, Secor SM, Castoe TA. Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding. Physiological Genomics. 47: 147-57. PMID 25670730 DOI: 10.1152/Physiolgenomics.00131.2014  0.715
2015 Schield DR, Card DC, Adams RH, Jezkova T, Reyes-Velasco J, Proctor FN, Spencer CL, Herrmann HW, Mackessy SP, Castoe TA. Incipient speciation with biased gene flow between two lineages of the Western Diamondback Rattlesnake (Crotalus atrox). Molecular Phylogenetics and Evolution. 83: 213-23. PMID 25534232 DOI: 10.1016/J.Ympev.2014.12.006  0.792
2015 Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA. Genetic consequences of postglacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus. Molecular Ecology. 24: 83-97. PMID 25413968 DOI: 10.1111/Mec.13012  0.626
2015 Reyes-Velasco J, Card DC, Andrew AL, Shaney KJ, Adams RH, Schield DR, Casewell NR, Mackessy SP, Castoe TA. Expression of venom gene homologs in diverse python tissues suggests a new model for the evolution of snake venom. Molecular Biology and Evolution. 32: 173-83. PMID 25338510 DOI: 10.1093/Molbev/Msu294  0.764
2015 Schield DR, Walsh MR, Card DC, Andrew AL, Adams RH, Castoe TA. EpiRADseq: Scalable analysis of genomewide patterns of methylation using next-generation sequencing Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.12435  0.647
2014 Card DC, Schield DR, Reyes-Velasco J, Fujita MK, Andrew AL, Oyler-McCance SJ, Fike JA, Tomback DF, Ruggiero RP, Castoe TA. Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies. Plos One. 9: e106649. PMID 25192061 DOI: 10.1371/Journal.Pone.0106649  0.809
2014 Gilbert C, Meik JM, Dashevsky D, Card DC, Castoe TA, Schaack S. Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes. Proceedings. Biological Sciences / the Royal Society. 281: 20141122. PMID 25080342 DOI: 10.1098/Rspb.2014.1122  0.691
2014 Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194. DOI: 10.1073/Pnas.1324133111  0.753
2013 Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50. PMID 24297902 DOI: 10.1073/Pnas.1314475110  0.784
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