| Year |
Citation |
Score |
| 2017 |
Gold AL, Steuber ER, White LK, Pacheco J, Sachs JF, Pagliaccio D, Berman E, Leibenluft E, Pine DS. Cortical Thickness and Subcortical Gray Matter Volume in Pediatric Anxiety Disorders. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 28436445 DOI: 10.1038/Npp.2017.83 |
0.379 |
|
| 2016 |
Roy S, Carass A, Pacheco J, Bilgel M, Resnick SM, Prince JL, Pham DL. Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation. Neuroimage. Clinical. 11: 264-75. PMID 26958465 DOI: 10.1016/J.Nicl.2016.02.005 |
0.446 |
|
| 2016 |
Spira AP, Gonzalez CE, Venkatraman VK, Wu MN, Pacheco J, Simonsick EM, Ferrucci L, Resnick SM. Sleep Duration and Subsequent Cortical Thinning in Cognitively Normal Older Adults. Sleep. PMID 26951390 DOI: 10.5665/Sleep.5768 |
0.492 |
|
| 2015 |
Gonzalez CE, Pacheco J, Beason-Held LL, Resnick SM. Longitudinal changes in cortical thinning associated with hypertension. Journal of Hypertension. 33: 1242-8. PMID 25693060 DOI: 10.1097/Hjh.0000000000000531 |
0.492 |
|
| 2015 |
Pacheco J, Goh JO, Kraut MA, Ferrucci L, Resnick SM. Greater cortical thinning in normal older adults predicts later cognitive impairment. Neurobiology of Aging. 36: 903-8. PMID 25311277 DOI: 10.1016/J.Neurobiolaging.2014.08.031 |
0.637 |
|
| 2014 |
McCarrey AC, Pacheco J, Carlson OD, Egan JM, Thambisetty M, An Y, Ferrucci L, Resnick SM. Interleukin-6 is linked to longitudinal rates of cortical thinning in aging. Translational Neuroscience. 5: 1-7. PMID 27066268 DOI: 10.2478/s13380-014-0203-0 |
0.428 |
|
| 2013 |
McCarrey A, Pacheco J, Carlson O, Egan J, Thambisetty M, An Y, Ferrucci L, Resnick S. Interleukin-6 (IL-6) is associated with longitudinal rates of cortical thinning Alzheimers & Dementia. 9: 307. DOI: 10.1016/J.Jalz.2013.05.635 |
0.433 |
|
| 2012 |
Pacheco J, Beevers CG, McGeary JE, Schnyer DM. Memory monitoring performance and PFC activity are associated with 5-HTTLPR genotype in older adults. Neuropsychologia. 50: 2257-70. PMID 22705442 DOI: 10.1016/J.Neuropsychologia.2012.05.030 |
0.613 |
|
| 2012 |
Glass BD, Chotibut T, Pacheco J, Schnyer DM, Maddox WT. Normal aging and the dissociable prototype learning systems. Psychology and Aging. 27: 120-8. PMID 21875215 DOI: 10.1037/A0024971 |
0.602 |
|
| 2011 |
Worthy DA, Gorlick MA, Pacheco JL, Schnyer DM, Maddox WT. With age comes wisdom: decision making in younger and older adults. Psychological Science. 22: 1375-80. PMID 21960248 DOI: 10.1177/0956797611420301 |
0.553 |
|
| 2011 |
Eyler LT, Prom-Wormley E, Panizzon MS, Kaup AR, Fennema-Notestine C, Neale MC, Jernigan TL, Fischl B, Franz CE, Lyons MJ, Grant M, Stevens A, Pacheco J, Perry ME, Schmitt JE, et al. Genetic and environmental contributions to regional cortical surface area in humans: a magnetic resonance imaging twin study. Cerebral Cortex (New York, N.Y. : 1991). 21: 2313-21. PMID 21378112 DOI: 10.1093/Cercor/Bhr013 |
0.329 |
|
| 2011 |
Eyler LT, Prom-Wormley E, Fennema-Notestine C, Panizzon MS, Neale MC, Jernigan TL, Fischl B, Franz CE, Lyons MJ, Stevens A, Pacheco J, Perry ME, Schmitt JE, Spitzer NC, Seidman LJ, et al. Genetic patterns of correlation among subcortical volumes in humans: results from a magnetic resonance imaging twin study. Human Brain Mapping. 32: 641-53. PMID 20572207 DOI: 10.1002/Hbm.21054 |
0.309 |
|
| 2010 |
Maddox WT, Pacheco J, Reeves M, Zhu B, Schnyer DM. Rule-based and information-integration category learning in normal aging. Neuropsychologia. 48: 2998-3008. PMID 20547171 DOI: 10.1016/J.Neuropsychologia.2010.06.008 |
0.604 |
|
| 2010 |
Beevers CG, Pacheco J, Clasen P, McGeary JE, Schnyer D. Prefrontal morphology, 5-HTTLPR polymorphism and biased attention for emotional stimuli. Genes, Brain, and Behavior. 9: 224-33. PMID 20039945 DOI: 10.1111/J.1601-183X.2009.00550.X |
0.618 |
|
| 2010 |
Rimol LM, Panizzon MS, Fennema-Notestine C, Eyler LT, Fischl B, Franz CE, Hagler DJ, Lyons MJ, Neale MC, Pacheco J, Perry ME, Schmitt JE, Grant MD, Seidman LJ, Thermenos HW, et al. Cortical thickness is influenced by regionally specific genetic factors. Biological Psychiatry. 67: 493-9. PMID 19963208 DOI: 10.1016/J.Biopsych.2009.09.032 |
0.35 |
|
| 2009 |
Rocklage M, Williams V, Pacheco J, Schnyer DM. White matter differences predict cognitive vulnerability to sleep deprivation. Sleep. 32: 1100-3. PMID 19725262 DOI: 10.1093/Sleep/32.8.1100 |
0.596 |
|
| 2009 |
Pacheco J, Beevers CG, Benavides C, McGeary J, Stice E, Schnyer DM. Frontal-limbic white matter pathway associations with the serotonin transporter gene promoter region (5-HTTLPR) polymorphism. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 6229-33. PMID 19439600 DOI: 10.1523/Jneurosci.0896-09.2009 |
0.636 |
|
| 2009 |
Fischl B, Stevens AA, Rajendran N, Yeo BT, Greve DN, Van Leemput K, Polimeni JR, Kakunoori S, Buckner RL, Pacheco J, Salat DH, Melcher J, Frosch MP, Hyman BT, Grant PE, et al. Predicting the location of entorhinal cortex from MRI. Neuroimage. 47: 8-17. PMID 19376238 DOI: 10.1016/J.Neuroimage.2009.04.033 |
0.334 |
|
| 2008 |
Dickerson BC, Fenstermacher E, Salat DH, Wolk DA, Maguire RP, Desikan R, Pacheco J, Quinn BT, Van der Kouwe A, Greve DN, Blacker D, Albert MS, Killiany RJ, Fischl B. Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. Neuroimage. 39: 10-8. PMID 17942325 DOI: 10.1016/J.Neuroimage.2007.08.042 |
0.414 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Yu P, Grant PE, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner RL, Golland P, Fischl B. Cortical surface shape analysis based on spherical wavelets. Ieee Transactions On Medical Imaging. 26: 582-97. PMID 17427744 DOI: 10.1109/Tmi.2007.892499 |
0.291 |
|
| 2009 |
Salat DH, Greve DN, Pacheco JL, Quinn BT, Helmer KG, Buckner RL, Fischl B. Regional white matter volume differences in nondemented aging and Alzheimer's disease. Neuroimage. 44: 1247-58. PMID 19027860 DOI: 10.1016/J.Neuroimage.2008.10.030 |
0.285 |
|
| 2007 |
Ségonne F, Pacheco J, Fischl B. Geometrically accurate topology-correction of cortical surfaces using nonseparating loops. Ieee Transactions On Medical Imaging. 26: 518-29. PMID 17427739 DOI: 10.1109/Tmi.2006.887364 |
0.239 |
|
| 2009 |
Dickerson BC, Feczko E, Augustinack JC, Pacheco J, Morris JC, Fischl B, Buckner RL. Differential effects of aging and Alzheimer's disease on medial temporal lobe cortical thickness and surface area. Neurobiology of Aging. 30: 432-40. PMID 17869384 DOI: 10.1016/J.Neurobiolaging.2007.07.022 |
0.218 |
|
| 2010 |
Kremen WS, Prom-Wormley E, Panizzon MS, Eyler LT, Fischl B, Neale MC, Franz CE, Lyons MJ, Pacheco J, Perry ME, Stevens A, Schmitt JE, Grant MD, Seidman LJ, Thermenos HW, et al. Genetic and environmental influences on the size of specific brain regions in midlife: the VETSA MRI study. Neuroimage. 49: 1213-23. PMID 19786105 DOI: 10.1016/J.Neuroimage.2009.09.043 |
0.217 |
|
| 2009 |
Dickerson BC, Bakkour A, Salat DH, Feczko E, Pacheco J, Greve DN, Grodstein F, Wright CI, Blacker D, Rosas HD, Sperling RA, Atri A, Growdon JH, Hyman BT, Morris JC, et al. The cortical signature of Alzheimer's disease: regionally specific cortical thinning relates to symptom severity in very mild to mild AD dementia and is detectable in asymptomatic amyloid-positive individuals. Cerebral Cortex (New York, N.Y. : 1991). 19: 497-510. PMID 18632739 DOI: 10.1093/Cercor/Bhn113 |
0.197 |
|
| 2006 |
Han X, Jovicich J, Salat D, van der Kouwe A, Quinn B, Czanner S, Busa E, Pacheco J, Albert M, Killiany R, Maguire P, Rosas D, Makris N, Dale A, Dickerson B, et al. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. Neuroimage. 32: 180-94. PMID 16651008 DOI: 10.1016/J.Neuroimage.2006.02.051 |
0.16 |
|
| 2009 |
Jovicich J, Czanner S, Han X, Salat D, van der Kouwe A, Quinn B, Pacheco J, Albert M, Killiany R, Blacker D, Maguire P, Rosas D, Makris N, Gollub R, Dale A, et al. MRI-derived measurements of human subcortical, ventricular and intracranial brain volumes: Reliability effects of scan sessions, acquisition sequences, data analyses, scanner upgrade, scanner vendors and field strengths. Neuroimage. 46: 177-92. PMID 19233293 DOI: 10.1016/J.Neuroimage.2009.02.010 |
0.152 |
|
| 2019 |
Edwards TL, Giri A, Hellwege JN, Hartmann KE, Stewart EA, Jeff JM, Bray MJ, Pendergrass SA, Torstenson ES, Keaton JM, Jones SH, Gogoi RP, Kuivaniemi H, Jackson KL, Kho AN, ... ... Pacheco JA, et al. A -Ethnic Genome-Wide Association Study of Uterine Fibroids. Frontiers in Genetics. 10: 511. PMID 31249589 DOI: 10.3389/Fgene.2019.00511 |
0.149 |
|
| 2021 |
Banday AR, Stanifer ML, Florez-Vargas O, Onabajo OO, Zahoor MA, Papenberg BW, Ring TJ, Lee CH, Andreakos E, Arons E, Barsh G, Biesecker LG, Boyle DL, Burnett-Hartman A, Carrington M, ... ... Pacheco JA, et al. Genetic regulation of nonsense-mediated decay underlies association with risk of severe COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 34282422 DOI: 10.1101/2021.07.09.21260221 |
0.149 |
|
| 2022 |
Banday AR, Stanifer ML, Florez-Vargas O, Onabajo OO, Papenberg BW, Zahoor MA, Mirabello L, Ring TJ, Lee CH, Albert PS, Andreakos E, Arons E, Barsh G, Biesecker LG, Boyle DL, ... ... Pacheco JA, et al. Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries. Nature Genetics. PMID 35835913 DOI: 10.1038/s41588-022-01113-z |
0.148 |
|
| 2023 |
Mao C, Xu J, Rasmussen L, Li Y, Adekkanattu P, Pacheco J, Bonakdarpour B, Vassar R, Shen L, Jiang G, Wang F, Pathak J, Luo Y. AD-BERT: Using Pre-trained Language Model to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. Journal of Biomedical Informatics. 104442. PMID 37429512 DOI: 10.1016/j.jbi.2023.104442 |
0.146 |
|
| 2013 |
Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, et al. Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nature Biotechnology. 31: 1102-10. PMID 24270849 DOI: 10.1038/Nbt.2749 |
0.146 |
|
| 2014 |
Shameer K, Denny JC, Ding K, Jouni H, Crosslin DR, de Andrade M, Chute CG, Peissig P, Pacheco JA, Li R, Bastarache L, Kho AN, Ritchie MD, Masys DR, Chisholm RL, et al. A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects. Human Genetics. 133: 95-109. PMID 24026423 DOI: 10.1007/S00439-013-1355-7 |
0.144 |
|
| 2014 |
Jeff JM, Brown-Gentry K, Goodloe R, Ritchie MD, Denny JC, Kho AN, Armstrong LL, McClellan B, Mayo P, Allen M, Jin H, Gillani NB, Schnetz-Boutaud N, Dilks HH, Basford MA, ... Pacheco JA, et al. Replication of SCN5A Associations with Electrocardio-graphic Traits in African Americans from Clinical and Epidemiologic Studies. Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Evobio (Conference), Author. 2014: 939-951. PMID 25590050 DOI: 10.1007/978-3-662-45523-4_76 |
0.143 |
|
| 2015 |
Simonett JM, Sohrab MA, Pacheco J, Armstrong LL, Rzhetskaya M, Smith M, Geoffrey Hayes M, Fawzi AA. A Validated Phenotyping Algorithm for Genetic Association Studies in Age-related Macular Degeneration. Scientific Reports. 5: 12875. PMID 26255974 DOI: 10.1038/Srep12875 |
0.14 |
|
| 2023 |
Xu J, Wang F, Zang C, Zhang H, Niotis K, Liberman AL, Stonnington CM, Ishii M, Adekkanattu P, Luo Y, Mao C, Rasmussen LV, Xu Z, Brandt P, Pacheco JA, et al. Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records. Scientific Reports. 13: 8102. PMID 37208478 DOI: 10.1038/s41598-023-35258-6 |
0.132 |
|
| 2013 |
Jeff JM, Ritchie MD, Denny JC, Kho AN, Ramirez AH, Crosslin D, Armstrong L, Basford MA, Wolf WA, Pacheco JA, Chisholm RL, Roden DM, Hayes MG, Crawford DC. Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans. Annals of Human Genetics. 77: 321-32. PMID 23534349 DOI: 10.1111/Ahg.12023 |
0.132 |
|
| 2007 |
Fennema-Notestine C, Gamst AC, Quinn BT, Pacheco J, Jernigan TL, Thal L, Buckner R, Killiany R, Blacker D, Dale AM, Fischl B, Dickerson B, Gollub RL. Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data. Neuroinformatics. 5: 235-45. PMID 17999200 DOI: 10.1007/S12021-007-9003-9 |
0.131 |
|
| 2013 |
Mosley JD, Van Driest SL, Larkin EK, Weeke PE, Witte JS, Wells QS, Karnes JH, Guo Y, Bastarache L, Olson LM, McCarty CA, Pacheco JA, Jarvik GP, Carrell DS, Larson EB, et al. Mechanistic phenotypes: an aggregative phenotyping strategy to identify disease mechanisms using GWAS data. Plos One. 8: e81503. PMID 24349080 DOI: 10.1371/Journal.Pone.0081503 |
0.13 |
|
| 2016 |
Liu CT, Raghavan S, Maruthur N, Kabagambe EK, Hong J, Ng MC, Hivert MF, Lu Y, An P, Bentley AR, Drolet AM, Gaulton KJ, Guo X, Armstrong LL, Irvin MR, ... ... Pacheco JA, et al. Trans-ethnic Meta-Analysis and Functional Annotation Illuminates the Genetic Architecture of Fasting Glucose and Insulin. American Journal of Human Genetics. PMID 27321945 DOI: 10.1016/J.Ajhg.2016.05.006 |
0.128 |
|
| 2021 |
Rosenthal EA, Crosslin DR, Gordon AS, Carrell DS, Stanaway IB, Larson EB, Grafton J, Wei WQ, Denny JC, Feng QP, Shah AS, Sturm AC, Ritchie MD, Pacheco JA, Hakonarson H, et al. Association between triglycerides, known risk SNVs and conserved rare variation in SLC25A40 in a multi-ancestry cohort. Bmc Medical Genomics. 14: 11. PMID 33407432 DOI: 10.1186/s12920-020-00854-2 |
0.127 |
|
| 2018 |
Mosley JD, Feng Q, Wells QS, Van Driest SL, Shaffer CM, Edwards TL, Bastarache L, Wei WQ, Davis LK, McCarty CA, Thompson W, Chute CG, Jarvik GP, Gordon AS, Palmer MR, ... ... Pacheco JA, et al. A study paradigm integrating prospective epidemiologic cohorts and electronic health records to identify disease biomarkers. Nature Communications. 9: 3522. PMID 30166544 DOI: 10.1038/S41467-018-05624-4 |
0.127 |
|
| 2014 |
Ng MC, Shriner D, Chen BH, Li J, Chen WM, Guo X, Liu J, Bielinski SJ, Yanek LR, Nalls MA, Comeau ME, Rasmussen-Torvik LJ, Jensen RA, Evans DS, Sun YV, ... ... Pacheco JA, et al. Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes. Plos Genetics. 10: e1004517. PMID 25102180 DOI: 10.1371/Journal.Pgen.1004517 |
0.126 |
|
| 2021 |
Glazer AM, Davogustto GE, Shaffer CM, Vanoye CG, Desai RR, Farber-Eger E, Dikilitas O, Shang N, Pacheco JA, Yang T, Muhammad A, Mosley JD, Van Driest SL, Wells QS, Shaffer LL, et al. Arrhythmia Variant Associations and Reclassifications in the eMERGE-III Sequencing Study. Circulation. PMID 34930020 DOI: 10.1161/CIRCULATIONAHA.121.055562 |
0.123 |
|
| 2011 |
Denny JC, Crawford DC, Ritchie MD, Bielinski SJ, Basford MA, Bradford Y, Chai HS, Bastarache L, Zuvich R, Peissig P, Carrell D, Ramirez AH, Pathak J, Wilke RA, Rasmussen L, ... ... Pacheco JA, et al. Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. American Journal of Human Genetics. 89: 529-42. PMID 21981779 DOI: 10.1016/J.Ajhg.2011.09.008 |
0.122 |
|
| 2017 |
Gustafson E, Pacheco J, Wehbe F, Silverberg J, Thompson W. A Machine Learning Algorithm for Identifying Atopic Dermatitis in Adults from Electronic Health Records. Ieee International Conference On Healthcare Informatics . Ieee International Conference On Healthcare Informatics. 2017: 83-90. PMID 29104964 DOI: 10.1109/ICHI.2017.31 |
0.118 |
|
| 2020 |
Pottinger TD, Puckelwartz MJ, Pesce LL, Robinson A, Kearns S, Pacheco JA, Rasmussen-Torvik LJ, Smith ME, Chisholm R, McNally EM. Pathogenic and Uncertain Genetic Variants Have Clinical Cardiac Correlates in Diverse Biobank Participants. Journal of the American Heart Association. 9: e013808. PMID 32009526 DOI: 10.1161/Jaha.119.013808 |
0.118 |
|
| 2023 |
Adekkanattu P, Rasmussen LV, Pacheco JA, Kabariti J, Stone DJ, Yu Y, Jiang G, Luo Y, Brandt PS, Xu Z, Vekaria V, Xu J, Wang F, Benda NC, Peng Y, et al. Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study. Scientific Reports. 13: 294. PMID 36609415 DOI: 10.1038/s41598-023-27493-8 |
0.117 |
|
| 2018 |
Wei WQ, Li X, Feng Q, Kubo M, Kullo IJ, Peissig PL, Karlson EW, Jarvik GP, Lee MTM, Shang N, Larson EA, Edwards T, Shaffer C, Mosley JD, Maeda S, ... ... Pacheco JA, et al. Variants are Associated with Residual Cardiovascular Risk in Patients Receiving Statins. Circulation. PMID 29703846 DOI: 10.1161/Circulationaha.117.031356 |
0.116 |
|
| 2010 |
Kremen WS, Prom-Wormley E, Panizzon MS, Eyler LT, Fischl B, Neale MC, Franz CE, Lyons MJ, Pacheco J, Perry ME, Stevens A, Schmitt JE, Grant MD, Seidman LJ, Thermenos HW, et al. Corrigendum to "Genetic and environmental influences on the size of specific brain regions in midlife: The VETSA MRI study". [NeuroImage 49 (2010) 1213-1223] (DOI:10.1016/j.neuroimage.2009.09.043) Neuroimage. 49: 3499-3502. DOI: 10.1016/J.Neuroimage.2009.12.015 |
0.115 |
|
| 2014 |
Malinowski JR, Denny JC, Bielinski SJ, Basford MA, Bradford Y, Peissig PL, Carrell D, Crosslin DR, Pathak J, Rasmussen L, Pacheco J, Kho A, Newton KM, Li R, Kullo IJ, et al. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. Plos One. 9: e111301. PMID 25436638 DOI: 10.1371/Journal.Pone.0111301 |
0.114 |
|
| 2020 |
Dikilitas O, Schaid DJ, Kosel ML, Carroll RJ, Chute CG, Denny JA, Fedotov A, Feng Q, Hakonarson H, Jarvik GP, Lee MTM, Pacheco JA, Rowley R, Sleiman PM, Stein CM, et al. Predictive Utility of Polygenic Risk Scores for Coronary Heart Disease in Three Major Racial and Ethnic Groups. American Journal of Human Genetics. 106: 707-716. PMID 32386537 DOI: 10.1016/J.Ajhg.2020.04.002 |
0.102 |
|
| 2021 |
Graham SE, Clarke SL, Wu KH, Kanoni S, Zajac GJM, Ramdas S, Surakka I, Ntalla I, Vedantam S, Winkler TW, Locke AE, Marouli E, Hwang MY, Han S, Narita A, ... ... Pacheco JA, et al. The power of genetic diversity in genome-wide association studies of lipids. Nature. PMID 34887591 DOI: 10.1038/s41586-021-04064-3 |
0.102 |
|
| 2023 |
Joo YY, Pacheco JA, Thompson WK, Rasmussen-Torvik LJ, Rasmussen LV, Lin FTJ, Andrade M, Borthwick KM, Bottinger E, Cagan A, Carrell DS, Denny JC, Ellis SB, Gottesman O, Linneman JG, et al. Multi-ancestry genome- and phenome-wide association studies of diverticular disease in electronic health records with natural language processing enriched phenotyping algorithm. Plos One. 18: e0283553. PMID 37196047 DOI: 10.1371/journal.pone.0283553 |
0.101 |
|
| 2012 |
Rasmussen-Torvik LJ, Pacheco JA, Wilke RA, Thompson WK, Ritchie MD, Kho AN, Muthalagu A, Hayes MG, Armstrong LL, Scheftner DA, Wilkins JT, Zuvich RL, Crosslin D, Roden DM, Denny JC, et al. High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE. Clinical and Translational Science. 5: 394-9. PMID 23067351 DOI: 10.1111/J.1752-8062.2012.00446.X |
0.101 |
|
| 2022 |
Ramdas S, Judd J, Graham SE, Kanoni S, Wang Y, Surakka I, Wenz B, Clarke SL, Chesi A, Wells A, Bhatti KF, Vedantam S, Winkler TW, Locke AE, Marouli E, ... ... Pacheco JA, et al. A multi-layer functional genomic analysis to understand noncoding genetic variation in lipids. American Journal of Human Genetics. 109: 1366-1387. PMID 35931049 DOI: 10.1016/j.ajhg.2022.06.012 |
0.101 |
|
| 2022 |
Kanoni S, Graham SE, Wang Y, Surakka I, Ramdas S, Zhu X, Clarke SL, Bhatti KF, Vedantam S, Winkler TW, Locke AE, Marouli E, Zajac GJM, Wu KH, Ntalla I, ... ... Pacheco JA, et al. Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis. Genome Biology. 23: 268. PMID 36575460 DOI: 10.1186/s13059-022-02837-1 |
0.1 |
|
| 2014 |
Jeff JM, Armstrong LL, Ritchie MD, Denny JC, Kho AN, Basford MA, Wolf WA, Pacheco JA, Li R, Chisholm RL, Roden DM, Hayes MG, Crawford DC. Admixture mapping and subsequent fine-mapping suggests a biologically relevant and novel association on chromosome 11 for type 2 diabetes in African Americans. Plos One. 9: e86931. PMID 24595071 DOI: 10.1371/Journal.Pone.0086931 |
0.1 |
|
| 2019 |
Xu Z, Luo Y, Adekkanattu P, Ancker JS, Jiang G, Kiefer RC, Pacheco JA, Rasmussen LV, Pathak J, Wang F. Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care. Studies in Health Technology and Informatics. 264: 462-466. PMID 31437966 DOI: 10.3233/SHTI190264 |
0.097 |
|
| 2009 |
Pacheco JA, Avila PC, Thompson JA, Law M, Quraishi JA, Greiman AK, Just EM, Kho A. A highly specific algorithm for identifying asthma cases and controls for genome-wide association studies. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 497-501. PMID 20351906 |
0.094 |
|
| 2017 |
Mosley JD, Shoemaker MB, Wells QS, Darbar D, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, et al. Investigating the Genetic Architecture of the PR Interval Using Clinical Phenotypes. Circulation. Cardiovascular Genetics. 10. PMID 28416512 DOI: 10.1161/Circgenetics.116.001482 |
0.088 |
|
| 2019 |
Namjou B, Lingren T, Huang Y, Parameswaran S, Cobb BL, Stanaway IB, Connolly JJ, Mentch FD, Benoit B, Niu X, Wei WQ, Carroll RJ, Pacheco JA, Harley ITW, Divanovic S, et al. GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network. Bmc Medicine. 17: 135. PMID 31311600 DOI: 10.1186/S12916-019-1364-Z |
0.087 |
|
| 2013 |
Newton KM, Peissig PL, Kho AN, Bielinski SJ, Berg RL, Choudhary V, Basford M, Chute CG, Kullo IJ, Li R, Pacheco JA, Rasmussen LV, Spangler L, Denny JC. Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. Journal of the American Medical Informatics Association : Jamia. 20: e147-54. PMID 23531748 DOI: 10.1136/Amiajnl-2012-000896 |
0.086 |
|
| 2012 |
Kho AN, Hayes MG, Rasmussen-Torvik L, Pacheco JA, Thompson WK, Armstrong LL, Denny JC, Peissig PL, Miller AW, Wei WQ, Bielinski SJ, Chute CG, Leibson CL, Jarvik GP, Crosslin DR, et al. Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. Journal of the American Medical Informatics Association : Jamia. 19: 212-8. PMID 22101970 DOI: 10.1136/Amiajnl-2011-000439 |
0.085 |
|
| 2011 |
Conway M, Berg RL, Carrell D, Denny JC, Kho AN, Kullo IJ, Linneman JG, Pacheco JA, Peissig P, Rasmussen L, Weston N, Chute CG, Pathak J. Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2011: 274-83. PMID 22195079 |
0.085 |
|
| 2011 |
Kho AN, Pacheco JA, Peissig PL, Rasmussen L, Newton KM, Weston N, Crane PK, Pathak J, Chute CG, Bielinski SJ, Kullo IJ, Li R, Manolio TA, Chisholm RL, Denny JC. Electronic medical records for genetic research: results of the eMERGE consortium. Science Translational Medicine. 3: 79re1. PMID 21508311 DOI: 10.1126/Scitranslmed.3001807 |
0.084 |
|
| 2020 |
Xu J, Wang F, Xu Z, Adekkanattu P, Brandt P, Jiang G, Kiefer RC, Luo Y, Mao C, Pacheco JA, Rasmussen LV, Zhang Y, Isaacson R, Pathak J. Data-driven discovery of probable Alzheimer's disease and related dementia subphenotypes using electronic health records. Learning Health Systems. 4: e10246. PMID 33083543 DOI: 10.1002/lrh2.10246 |
0.083 |
|
| 2023 |
Pacheco JA, Rasmussen LV, Wiley K, Person TN, Cronkite DJ, Sohn S, Murphy S, Gundelach JH, Gainer V, Castro VM, Liu C, Mentch F, Lingren T, Sundaresan AS, Eickelberg G, et al. Evaluation of the portability of computable phenotypes with natural language processing in the eMERGE network. Scientific Reports. 13: 1971. PMID 36737471 DOI: 10.1038/s41598-023-27481-y |
0.082 |
|
| 2022 |
Pacheco J, Garvey MA, Sarampote CS, Cohen ED, Murphy ER, Friedman-Hill SR. Annual Research Review: The contributions of the RDoC research framework on understanding the neurodevelopmental origins, progression and treatment of mental illnesses. Journal of Child Psychology and Psychiatry, and Allied Disciplines. PMID 34979592 DOI: 10.1111/jcpp.13543 |
0.081 |
|
| 2021 |
Chapman M, Rasmussen LV, Pacheco JA, Curcin V. Phenoflow: A Microservice Architecture for Portable Workflow-based Phenotype Definitions. Amia ... Annual Symposium Proceedings. Amia Symposium. 2021: 142-151. PMID 34457128 |
0.078 |
|
| 2015 |
Rasmussen-Torvik LJ, Baldridge AS, Pacheco JA, Aufox SA, Kim KA, Silverstein JC, Denham EW, Hungness E, Smith ME, Greenland P. rs4771122 Predicts Multiple Measures of Long-Term Weight Loss After Bariatric Surgery. Obesity Surgery. PMID 26337695 DOI: 10.1007/S11695-015-1872-7 |
0.078 |
|
| 2020 |
Agrawal S, Heiss MS, Fenter RB, Abramova TV, Perera MA, Pacheco JA, Smith ME, Rasmussen-Torvik LJ, George AL. Impact of CYP2C9-Interacting Drugs on Warfarin Pharmacogenomics. Clinical and Translational Science. PMID 32270628 DOI: 10.1111/cts.12781 |
0.078 |
|
| 2017 |
Dumitrescu L, Ritchie MD, Denny JC, El Rouby NM, McDonough CW, Bradford Y, Ramirez AH, Bielinski SJ, Basford MA, Chai HS, Peissig P, Carrell D, Pathak J, Rasmussen LV, Wang X, ... Pacheco JA, et al. Genome-wide study of resistant hypertension identified from electronic health records. Plos One. 12: e0171745. PMID 28222112 DOI: 10.1371/Journal.Pone.0171745 |
0.075 |
|
| 2015 |
Gallego CJ, Burt A, Sundaresan AS, Ye Z, Shaw C, Crosslin DR, Crane PK, Fullerton SM, Hansen K, Carrell D, Kuivaniemi H, Derr K, de Andrade M, McCarty CA, Kitchner TE, ... ... Pacheco JA, et al. Penetrance of Hemochromatosis in HFE Genotypes Resulting in p.Cys282Tyr and p.[Cys282Tyr];[His63Asp] in the eMERGE Network. American Journal of Human Genetics. PMID 26365338 DOI: 10.1016/J.Ajhg.2015.08.008 |
0.072 |
|
| 2023 |
Spotnitz M, Acharya N, Cimino JJ, Murphy S, Namjou B, Crimmins N, Walunas T, Liu C, Crosslin D, Benoit B, Rosenthal E, Pacheco JA, Ostropolets A, Reyes Nieva H, Patterson JS, et al. A metadata framework for computational phenotypes. Jamia Open. 6: ooad032. PMID 37181728 DOI: 10.1093/jamiaopen/ooad032 |
0.071 |
|
| 2015 |
De R, Verma SS, Drenos F, Holzinger ER, Holmes MV, Hall MA, Crosslin DR, Carrell DS, Hakonarson H, Jarvik G, Larson E, Pacheco JA, Rasmussen-Torvik LJ, Moore CB, Asselbergs FW, et al. Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR). Biodata Mining. 8: 41. PMID 26674805 DOI: 10.1186/S13040-015-0074-0 |
0.071 |
|
| 2021 |
De T, Zhang H, Alarcon C, Lec B, Avitia J, Smithberger E, Chen C, Horvath M, Kwan S, Young M, Adhikari S, Kwon J, Pacheco J, Jarvik G, Wei WQ, et al. Genetic association of primary nonresponse to anti-TNFα therapy in patients with inflammatory bowel disease. Pharmacogenetics and Genomics. PMID 34380996 DOI: 10.1097/FPC.0000000000000445 |
0.071 |
|
| 2019 |
Xu Z, Feng Y, Li Y, Srivastava A, Adekkanattu P, Ancker JS, Jiang G, Kiefer RC, Lee K, Pacheco JA, Rasmussen LV, Pathak J, Luo Y, Wang F. Predictive Modeling of the Risk of Acute Kidney Injury in Critical Care: A Systematic Investigation of The Class Imbalance Problem. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2019: 809-818. PMID 31259038 |
0.07 |
|
| 2016 |
Jiang G, Kiefer RC, Rasmussen LV, Solbrig HR, Mo H, Pacheco JA, Xu J, Montague E, Thompson WK, Denny JC, Chute CG, Pathak J. Developing a Data Element Repository to Support EHR-driven Phenotype Algorithm Authoring and Execution. Journal of Biomedical Informatics. PMID 27392645 DOI: 10.1016/J.Jbi.2016.07.008 |
0.069 |
|
| 2015 |
Bielinski SJ, Pathak J, Carrell DS, Takahashi PY, Olson JE, Larson NB, Liu H, Sohn S, Wells QS, Denny JC, Rasmussen-Torvik LJ, Pacheco JA, Jackson KL, Lesnick TG, Gullerud RE, et al. A Robust e-Epidemiology Tool in Phenotyping Heart Failure with Differentiation for Preserved and Reduced Ejection Fraction: the Electronic Medical Records and Genomics (eMERGE) Network. Journal of Cardiovascular Translational Research. PMID 26195183 DOI: 10.1007/S12265-015-9644-2 |
0.069 |
|
| 2017 |
Nadkarni GN, Galarneau G, Ellis SB, Nadukuru R, Zhang J, Scott SA, Schurmann C, Li R, Rasmussen-Torvik LJ, Kho AN, Hayes MG, Pacheco JA, Manolio TA, Chisholm RL, Roden DM, et al. Apolipoprotein L1 Variants and Blood Pressure Traits in African Americans. Journal of the American College of Cardiology. 69: 1564-1574. PMID 28335839 DOI: 10.1016/J.Jacc.2017.01.040 |
0.068 |
|
| 2020 |
Xu Z, Chou J, Zhang XS, Luo Y, Isakova T, Adekkanattu P, Ancker JS, Jiang G, Kiefer RC, Pacheco JA, Rasmussen LV, Pathak J, Wang F. Identifying Sub-Phenotypes of Acute Kidney Injury using Structured and Unstructured Electronic Health Record Data with Memory Networks. Journal of Biomedical Informatics. 103361. PMID 31911172 DOI: 10.1016/J.Jbi.2019.103361 |
0.067 |
|
| 2015 |
Rasmussen LV, Kiefer RC, Mo H, Speltz P, Thompson WK, Jiang G, Pacheco JA, Xu J, Zhu Q, Denny JC, Montague E, Pathak J. A Modular Architecture for Electronic Health Record-Driven Phenotyping. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2015: 147-51. PMID 26306258 |
0.067 |
|
| 2016 |
Mosley JD, Van Driest SL, Wells QS, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, Peissig PL, et al. Defining a Contemporary Ischemic Heart Disease Genetic Risk Profile using Historical Data. Circulation. Cardiovascular Genetics. PMID 27780847 DOI: 10.1161/Circgenetics.116.001530 |
0.066 |
|
| 2019 |
Shang N, Liu C, Rasmussen LV, Ta CN, Caroll RJ, Benoit B, Lingren T, Dikilitas O, Mentch FD, Carrell DS, Wei WQ, Luo Y, Gainer VS, Kullo IJ, Pacheco JA, et al. Making work visible for electronic phenotype implementation: lessons learned from the eMERGE network. Journal of Biomedical Informatics. 103293. PMID 31542521 DOI: 10.1016/J.Jbi.2019.103293 |
0.066 |
|
| 2019 |
Rasmussen LV, Brandt PS, Jiang G, Kiefer RC, Pacheco JA, Adekkanattu P, Ancker JS, Wang F, Xu Z, Pathak J, Luo Y. Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. Amia ... Annual Symposium Proceedings. Amia Symposium. 2019: 755-764. PMID 32308871 |
0.066 |
|
| 2024 |
Deng Y, Pacheco JA, Ghosh A, Chung A, Mao C, Smith JC, Zhao J, Wei WQ, Barnado A, Dorn C, Weng C, Liu C, Cordon A, Yu J, Tedla Y, et al. Natural language processing to identify lupus nephritis phenotype in electronic health records. Bmc Medical Informatics and Decision Making. 22: 348. PMID 38433189 DOI: 10.1186/s12911-024-02420-7 |
0.065 |
|
| 2015 |
Mo H, Pacheco JA, Rasmussen LV, Speltz P, Pathak J, Denny JC, Thompson WK. A Prototype for Executable and Portable Electronic Clinical Quality Measures Using the KNIME Analytics Platform. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2015: 127-31. PMID 26306254 |
0.065 |
|
| 2022 |
Sanislow CA, Morris SE, Cuthbert BN, Pacheco J. Development and environment in the National Institute of Mental Health (NIMH) Research Domain Criteria. Journal of Psychopathology and Clinical Science. 131: 653-659. PMID 35901394 DOI: 10.1037/abn0000768 |
0.064 |
|
| 2016 |
Jackson KL, Mbagwu M, Pacheco JA, Baldridge AS, Viox DJ, Linneman JG, Shukla SK, Peissig PL, Borthwick KM, Carrell DA, Bielinski SJ, Kirby JC, Denny JC, Mentch FD, Vazquez LM, et al. Performance of an electronic health record-based phenotype algorithm to identify community associated methicillin-resistant Staphylococcus aureus cases and controls for genetic association studies. Bmc Infectious Diseases. 16: 684. PMID 27855652 DOI: 10.1186/S12879-016-2020-2 |
0.063 |
|
| 2022 |
Zeng C, Bastarache LA, Tao R, Venner E, Hebbring S, Andujar JD, Bland ST, Crosslin DR, Pratap S, Cooley A, Pacheco JA, Christensen KD, Perez E, Zawatsky CLB, Witkowski L, et al. Association of Pathogenic Variants in Hereditary Cancer Genes With Multiple Diseases. Jama Oncology. PMID 35446370 DOI: 10.1001/jamaoncol.2022.0373 |
0.062 |
|
| 2024 |
Tran SD, Lin J, Galvez C, Rasmussen LV, Pacheco J, Perottino GM, Rahbari KJ, Miller CD, John JD, Theros J, Vogel K, Dinh PV, Malik S, Ramzan U, Tegtmeyer K, et al. Rapid identification of inflammatory arthritis and associated adverse events following immune checkpoint therapy: a machine learning approach. Frontiers in Immunology. 15: 1331959. PMID 38558818 DOI: 10.3389/fimmu.2024.1331959 |
0.062 |
|
| 2004 |
Linares R, Pacheco JR, Good TA. Efficacy of different targeting agents in the photolysis of interleukin-2 receptor bearing cells. Journal of Photochemistry and Photobiology. B, Biology. 77: 17-26. PMID 15542358 DOI: 10.1016/J.Jphotobiol.2004.08.006 |
0.061 |
|
| 2016 |
Kirby JC, Speltz P, Rasmussen LV, Basford M, Gottesman O, Peissig PL, Pacheco JA, Tromp G, Pathak J, Carrell DS, Ellis SB, Lingren T, Thompson WK, Savova G, Haines J, et al. PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. Journal of the American Medical Informatics Association : Jamia. PMID 27026615 DOI: 10.1093/Jamia/Ocv202 |
0.06 |
|
| 2020 |
Xu Z, Wang F, Adekkanattu P, Bose B, Vekaria V, Brandt P, Jiang G, Kiefer RC, Luo Y, Pacheco JA, Rasmussen LV, Xu J, Alexopoulos G, Pathak J. Subphenotyping depression using machine learning and electronic health records. Learning Health Systems. 4: e10241. PMID 33083540 DOI: 10.1002/lrh2.10241 |
0.06 |
|
| 2023 |
Graham SE, Clarke SL, Wu KH, Kanoni S, Zajac GJM, Ramdas S, Surakka I, Ntalla I, Vedantam S, Winkler TW, Locke AE, Marouli E, Hwang MY, Han S, Narita A, ... ... Pacheco JA, et al. Author Correction: The power of genetic diversity in genome-wide association studies of lipids. Nature. PMID 37237109 DOI: 10.1038/s41586-023-06194-2 |
0.058 |
|
| 2017 |
Smith A, Ng A, Burgess ER, Weingarten N, Pacheco JA. Sensi-steps: Using Patient-Generated Data to Prevent Post-stroke Falls. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 2294-2298. PMID 29854271 |
0.058 |
|
| 2019 |
Hripcsak G, Shang N, Peissig PL, Rasmussen LV, Liu C, Benoit B, Carroll RJ, Carrell DS, Denny JC, Dikilitas O, Gainer VS, Marie Howell K, Klann JG, Kullo IJ, Lingren T, ... ... Pacheco JA, et al. Facilitating phenotype transfer using a common data model. Journal of Biomedical Informatics. 103253. PMID 31325501 DOI: 10.1016/J.Jbi.2019.103253 |
0.057 |
|
| 2021 |
Wen A, Rasmussen LV, Stone D, Liu S, Kiefer R, Adekkanattu P, Brandt PS, Pacheco JA, Luo Y, Wang F, Pathak J, Liu H, Jiang G. CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping. Amia ... Annual Symposium Proceedings. Amia Symposium. 2021: 624-633. PMID 34457178 |
0.057 |
|
| 2016 |
Almoguera B, Vazquez L, Mentch F, Connolly J, Pacheco JA, Sundaresan AS, Peissig PL, Linneman JG, McCarty CA, Crosslin D, Carrell DS, Lingren T, Namjou-Khales B, Harley JB, Larson E, et al. Identification of Four Novel Loci in Asthma in European and African American Populations. American Journal of Respiratory and Critical Care Medicine. PMID 27611488 DOI: 10.1164/Rccm.201604-0861Oc |
0.056 |
|
| 2016 |
Mo H, Jiang G, Pacheco JA, Kiefer R, Rasmussen LV, Pathak J, Denny JC, Thompson WK. A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. Amia Joint Summits On Translational Science Proceedings. Amia Summit On Translational Science. 2016: 167-75. PMID 27570665 |
0.056 |
|
| 2021 |
Walunas TL, Ghosh AS, Pacheco JA, Mitrovic V, Wu A, Jackson KL, Schusler R, Chung A, Erickson D, Mancera-Cuevas K, Luo Y, Kho AN, Ramsey-Goldman R. Evaluation of structured data from electronic health records to identify clinical classification criteria attributes for systemic lupus erythematosus. Lupus Science & Medicine. 8. PMID 33903204 DOI: 10.1136/lupus-2021-000488 |
0.056 |
|
| 2012 |
Thompson WK, Rasmussen LV, Pacheco JA, Peissig PL, Denny JC, Kho AN, Miller A, Pathak J. An evaluation of the NQF Quality Data Model for representing Electronic Health Record driven phenotyping algorithms. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 911-20. PMID 23304366 |
0.054 |
|
| 2016 |
Keswani RN, Law R, Ciolino JD, Lo AA, Gluskin AB, Bentrem DJ, Komanduri S, Pacheco JA, Grande D, Thompson WK. Adverse Events after Surgery for Benign Colon Polyps are Common and Associated with Increased Length of Stay and Costs. Gastrointestinal Endoscopy. PMID 26828760 DOI: 10.1016/J.Gie.2016.01.048 |
0.054 |
|
| 2019 |
Rasmussen LV, Smith ME, Almaraz F, Persell SD, Rasmussen-Torvik LJ, Pacheco JA, Chisholm RL, Christensen C, Herr TM, Wehbe FH, Starren JB. An ancillary genomics system to support the return of pharmacogenomic results. Journal of the American Medical Informatics Association : Jamia. PMID 30778576 DOI: 10.1093/Jamia/Ocy187 |
0.054 |
|
| 2016 |
Jones GT, Tromp G, Kuivaniemi H, Gretarsdottir S, Baas AF, Giusti B, Strauss E, van 't Hof FN, Webb T, Erdman R, Ritchie MD, Elmore JR, Verma A, Pendergrass S, Kullo IJ, ... ... Pacheco JA, et al. Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci. Circulation Research. PMID 27899403 DOI: 10.1161/Circresaha.116.308765 |
0.051 |
|
| 2022 |
Brandt PS, Kho A, Luo Y, Pacheco JA, Walunas TL, Hakonarson H, Hripcsak G, Liu C, Shang N, Weng C, Walton N, Carrell DS, Crane PK, Larson EB, Chute CG, et al. Characterizing variability of electronic health record-driven phenotype definitions. Journal of the American Medical Informatics Association : Jamia. PMID 36474423 DOI: 10.1093/jamia/ocac235 |
0.051 |
|
| 2020 |
Joo YY, Actkins K, Pacheco JA, Basile AO, Carroll R, Crosslin DR, Day F, Denny JC, Velez Edwards DR, Hakonarson H, Harley JB, Hebbring SJ, Ho K, Jarvik GP, Jones M, et al. A polygenic and phenotypic risk prediction for Polycystic Ovary Syndrome evaluated by Phenome-wide association studies. The Journal of Clinical Endocrinology and Metabolism. PMID 31917831 DOI: 10.1210/Clinem/Dgz326 |
0.05 |
|
| 2015 |
Baldridge AS, Pacheco JA, Aufox SA, Kim KA, Silverstein JC, Denham W, Hungness E, Smith ME, Allen NB, Greenland P, Rasmussen-Torvik LJ. Factors Associated With Long-Term Weight Loss Following Bariatric Surgery Using 2 Methods for Repeated Measures Analysis. American Journal of Epidemiology. PMID 26093003 DOI: 10.1093/Aje/Kwv039 |
0.05 |
|
| 2018 |
Pacheco JA, Rasmussen LV, Kiefer RC, Campion TR, Speltz P, Carroll RJ, Stallings SC, Mo H, Ahuja M, Jiang G, LaRose ER, Peissig PL, Shang N, Benoit B, Gainer VS, et al. A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. Journal of the American Medical Informatics Association : Jamia. PMID 30124903 DOI: 10.1093/Jamia/Ocy101 |
0.05 |
|
| 2022 |
Ge T, Irvin MR, Patki A, Srinivasasainagendra V, Lin YF, Tiwari HK, Armstrong ND, Benoit B, Chen CY, Choi KW, Cimino JJ, Davis BH, Dikilitas O, Etheridge B, Feng YA, ... ... Pacheco JA, et al. Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations. Genome Medicine. 14: 70. PMID 35765100 DOI: 10.1186/s13073-022-01074-2 |
0.049 |
|
| 2011 |
Pacheco JA, Thompson W, Kho A. Automatically detecting problem list omissions of type 2 diabetes cases using electronic medical records. Amia ... Annual Symposium Proceedings. Amia Symposium. 2011: 1062-9. PMID 22195167 |
0.048 |
|
| 2021 |
Khan SS, Hoell C, Castillo LM, Connolly JJ, Crosslin DR, Chung WK, Gordon AS, Harr M, Jarvik GP, Kullo I, Larson EB, Leppig KA, Manolio T, Pacheco JA, Ralston JD, et al. Practice Patterns After Return of Rare Variants Associated With Cardiomyopathy in the Electronic Medical Records and Genomics Network. Circulation. Heart Failure. CIRCHEARTFAILURE1200. PMID 33951936 DOI: 10.1161/CIRCHEARTFAILURE.120.008155 |
0.047 |
|
| 2023 |
Forrest N, Jackson KL, Tran S, Pacheco JA, Mitrovic V, Furmanchuk A, Kho AN, Ramsey-Goldman R, Walunas TL. Identification and assessment of classification criteria attributes for systemic lupus erythematosus in a regional medical record data network. Lupus Science & Medicine. 10. PMID 37857531 DOI: 10.1136/lupus-2023-000963 |
0.047 |
|
| 2019 |
Hong N, Wen A, Stone DJ, Tsuji S, Kingsbury PR, Rasmussen LV, Pacheco JA, Adekkanattu P, Wang F, Luo Y, Pathak J, Liu H, Jiang G. Developing a FHIR-based EHR Phenotyping Framework: A Case Study for Identification of Patients with Obesity and Multiple Comorbidities from Discharge Summaries. Journal of Biomedical Informatics. 103310. PMID 31622801 DOI: 10.1016/J.Jbi.2019.103310 |
0.047 |
|
| 2022 |
Yu J, Pacheco JA, Ghosh AS, Luo Y, Weng C, Shang N, Benoit B, Carrell DS, Carroll RJ, Dikilitas O, Freimuth RR, Gainer VS, Hakonarson H, Hripcsak G, Kullo IJ, et al. Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. Bmc Medical Informatics and Decision Making. 22: 23. PMID 35090449 DOI: 10.1186/s12911-022-01759-z |
0.046 |
|
| 2015 |
Mo H, Thompson WK, Rasmussen LV, Pacheco JA, Jiang G, Kiefer R, Zhu Q, Xu J, Montague E, Carrell DS, Lingren T, Mentch FD, Ni Y, Wehbe FH, Peissig PL, et al. Desiderata for computable representations of electronic health records-driven phenotype algorithms. Journal of the American Medical Informatics Association : Jamia. PMID 26342218 DOI: 10.1093/Jamia/Ocv112 |
0.043 |
|
| 2018 |
Mosley JD, Benson MD, Smith JG, Melander O, Ngo D, Shaffer CM, Ferguson JF, Herzig MS, McCarty CA, Chute CG, Jarvik GP, Gordon AS, Palmer MR, Crosslin DR, Larson EB, ... ... Pacheco JA, et al. Probing the Virtual Proteome to Identify Novel Disease Biomarkers. Circulation. 138: 2469-2481. PMID 30571344 DOI: 10.1161/Circulationaha.118.036063 |
0.043 |
|
| 2014 |
Rasmussen LV, Thompson WK, Pacheco JA, Kho AN, Carrell DS, Pathak J, Peissig PL, Tromp G, Denny JC, Starren JB. Design patterns for the development of electronic health record-driven phenotype extraction algorithms. Journal of Biomedical Informatics. 51: 280-6. PMID 24960203 DOI: 10.1016/J.Jbi.2014.06.007 |
0.041 |
|
| 2022 |
Brandt PS, Pacheco JA, Adekkanattu P, Sholle ET, Abedian S, Stone DJ, Knaack DM, Xu J, Xu Z, Peng Y, Benda NC, Wang F, Luo Y, Jiang G, Pathak J, et al. Design and validation of a FHIR-based EHR-driven phenotyping toolbox. Journal of the American Medical Informatics Association : Jamia. PMID 35799370 DOI: 10.1093/jamia/ocac063 |
0.041 |
|
| 2012 |
Carroll RJ, Thompson WK, Eyler AE, Mandelin AM, Cai T, Zink RM, Pacheco JA, Boomershine CS, Lasko TA, Xu H, Karlson EW, Perez RG, Gainer VS, Murphy SN, Ruderman EM, et al. Portability of an algorithm to identify rheumatoid arthritis in electronic health records. Journal of the American Medical Informatics Association : Jamia. 19: e162-9. PMID 22374935 DOI: 10.1136/Amiajnl-2011-000583 |
0.04 |
|
| 2015 |
Heatherly R, Rasmussen LV, Peissig PL, Pacheco JA, Harris P, Denny JC, Malin BA. A multi-institution evaluation of clinical profile anonymization. Journal of the American Medical Informatics Association : Jamia. PMID 26567325 DOI: 10.1093/Jamia/Ocv154 |
0.037 |
|
| 2014 |
Hsu J, Pacheco JA, Stevens WW, Smith ME, Avila PC. Accuracy of phenotyping chronic rhinosinusitis in the electronic health record. American Journal of Rhinology & Allergy. 28: 140-4. PMID 24717952 DOI: 10.2500/Ajra.2014.28.4012 |
0.036 |
|
| 2019 |
Adekkanattu P, Jiang G, Luo Y, Kingsbury PR, Xu Z, Rasmussen LV, Pacheco JA, Kiefer RC, Stone DJ, Brandt PS, Yao L, Zhong Y, Deng Y, Wang F, Ancker JS, et al. Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. Amia ... Annual Symposium Proceedings. Amia Symposium. 2019: 190-199. PMID 32308812 |
0.035 |
|
| 2018 |
Manhart WA, Pacheco JR, Hume AJ, Cressey TN, Deflubé LR, Mühlberger E. A Chimeric Lloviu Virus Minigenome System Reveals that the Bat-Derived Filovirus Replicates More Similarly to Ebolaviruses than Marburgviruses. Cell Reports. 24: 2573-2580.e4. PMID 30184492 DOI: 10.1016/J.Celrep.2018.08.008 |
0.035 |
|
| 2019 |
Walunas TL, Ghosh AS, Pacheco JA, Jackson KL, Chung AH, Erickson DL, Mancera-Cuevas K, Ramsey-Goldman R, Kho AN. Assessing the Concordance of Clinical Classification Criteria for Lupus Between Electronic Health Records and a Physician Curated Registry. Studies in Health Technology and Informatics. 264: 1466-1467. PMID 31438184 DOI: 10.3233/SHTI190487 |
0.035 |
|
| 2020 |
Brandt PS, Kiefer RC, Pacheco JA, Adekkanattu P, Sholle ET, Ahmad FS, Xu J, Xu Z, Ancker JS, Wang F, Luo Y, Jiang G, Pathak J, Rasmussen LV. Toward cross-platform electronic health record-driven phenotyping using Clinical Quality Language. Learning Health Systems. 4: e10233. PMID 33083538 DOI: 10.1002/lrh2.10233 |
0.034 |
|
| 2023 |
Haas KM, McGregor MJ, Bouhaddou M, Polacco BJ, Kim EY, Nguyen TT, Newton BW, Urbanowski M, Kim H, Williams MAP, Rezelj VV, Hardy A, Fossati A, Stevenson EJ, Sukerman E, ... ... Pacheco JA, et al. Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets. Nature Communications. 14: 6030. PMID 37758692 DOI: 10.1038/s41467-023-41442-z |
0.034 |
|
| 2019 |
Sanislow CA, Ferrante M, Pacheco J, Rudorfer MV, Morris SE. Advancing Translational Research Using NIMH Research Domain Criteria and Computational Methods. Neuron. 101: 779-782. PMID 30844398 DOI: 10.1016/J.Neuron.2019.02.024 |
0.029 |
|
| 2012 |
Wei WQ, Leibson CL, Ransom JE, Kho AN, Caraballo PJ, Chai HS, Yawn BP, Pacheco JA, Chute CG. Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. Journal of the American Medical Informatics Association : Jamia. 19: 219-24. PMID 22249968 DOI: 10.1136/Amiajnl-2011-000597 |
0.028 |
|
| 2017 |
Nelson EV, Pacheco JR, Hume A, Cressey TN, Deflubé LR, Ruedas JB, Connor JH, Ebihara H, Mühlberger E. An RNA polymerase II-driven Ebola virus minigenome system as an advanced tool for antiviral drug screening. Antiviral Research. PMID 28807685 DOI: 10.1016/J.Antiviral.2017.08.005 |
0.028 |
|
| 2015 |
Borthwick KM, Smelser DT, Bock JA, Elmore JR, Ryer EJ, Ye Z, Pacheco JA, Carrell DS, Michalkiewicz M, Thompson WK, Pathak J, Bielinski SJ, Denny JC, Linneman JG, Peissig PL, et al. ePhenotyping for Abdominal Aortic Aneurysm in the Electronic Medical Records and Genomics (eMERGE) Network: Algorithm Development and Konstanz Information Miner Workflow. International Journal of Biomedical Data Mining. 4. PMID 27054044 |
0.027 |
|
| 2017 |
Vaidyanathan U, Pacheco J. Research Domain Criteria Constructs: Integrative reviews and empirical perspectives. Journal of Affective Disorders. 216: 1-2. PMID 28610708 DOI: 10.1016/j.jad.2017.05.028 |
0.025 |
|
| 2015 |
Xu J, Rasmussen LV, Shaw PL, Jiang G, Kiefer RC, Mo H, Pacheco JA, Speltz P, Zhu Q, Denny JC, Pathak J, Thompson WK, Montague E. Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. Journal of the American Medical Informatics Association : Jamia. PMID 26224336 DOI: 10.1093/Jamia/Ocv070 |
0.025 |
|
| 2021 |
Chapman M, Mumtaz S, Rasmussen LV, Karwath A, Gkoutos GV, Gao C, Thayer D, Pacheco JA, Parkinson H, Richesson RL, Jefferson E, Denaxas S, Curcin V. Desiderata for the development of next-generation electronic health record phenotype libraries. Gigascience. 10. PMID 34508578 DOI: 10.1093/gigascience/giab059 |
0.02 |
|
| 2020 |
López J, Torres I, Pacheco J, Quizhpe R, Flores J. Drenaje anómalo total de venas pulmonares variante supracardiaca en una mujer adulta. Archivos De Cardiologia De Mexico. PMID 33147598 DOI: 10.24875/ACM.20000116 |
0.019 |
|
| 2020 |
Klarin D, Verma SS, Judy R, Dikilitas O, Wolford BN, Paranjpe I, Levin MG, Pan C, Tcheandjieu C, Spin JM, Lynch J, Assimes TL, Nyrønning LÅ, Mattsson E, Edwards TL, ... ... Pacheco JA, et al. Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program. Circulation. PMID 32981348 DOI: 10.1161/CIRCULATIONAHA.120.047544 |
0.018 |
|
| 2016 |
van 't Hof FN, Ruigrok YM, Lee CH, Ripke S, Anderson G, de Andrade M, Baas AF, Blankensteijn JD, Böttinger EP, Bown MJ, Broderick J, Bijlenga P, Carrell DS, Crawford DC, Crosslin DR, ... ... Pacheco J, et al. Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms. Journal of the American Heart Association. 5. PMID 27418160 DOI: 10.1161/Jaha.115.002603 |
0.017 |
|
| 2021 |
Brandt PS, Pacheco JA, Rasmussen LV. Development of a repository of computable phenotype definitions using the clinical quality language. Jamia Open. 4: ooab094. PMID 34926996 DOI: 10.1093/jamiaopen/ooab094 |
0.017 |
|
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