Jakub Mieczkowski - Publications

Affiliations: 
Nencki Institute, Warsaw, Poland, Warszawa, mazowieckie, Poland 
Website:
www.jmieczkowski.pl

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ulanska-Poutanen J, Mieczkowski J, Zhao C, Konarzewska K, Kaza B, Pohl HB, Bugajski L, Kaminska B, Franklin RJ, Zawadzka M. Injury-induced perivascular niche supports alternative differentiation of adult rodent CNS progenitor cells. Elife. 7. PMID 30222103 DOI: 10.7554/eLife.30325  1
2018 Mieczkowski J, Tolstorukov MY. Bioinformatic Analysis of Nucleosome and Histone Variant Positioning. Methods in Molecular Biology (Clifton, N.J.). 1832: 185-203. PMID 30073528 DOI: 10.1007/978-1-4939-8663-7_10  1
2018 Walentynowicz KA, Ochocka N, Pasierbinska M, Wojnicki K, Stepniak K, Mieczkowski J, Ciechomska IA, Kaminska B. In Search for Reliable Markers of Glioma-Induced Polarization of Microglia. Frontiers in Immunology. 9: 1329. PMID 29963047 DOI: 10.3389/fimmu.2018.01329  1
2017 Garofalo S, Porzia A, Mainiero F, Di Angelantonio S, Cortese B, Basilico B, Pagani F, Cignitti G, Chece G, Maggio R, Tremblay E, Savage J, Bisht K, Esposito V, Bernardini G, ... ... Mieczkowski J, et al. Environmental stimuli shape microglial plasticity in glioma. Elife. 6. PMID 29286001 DOI: 10.7554/eLife.33415  1
2017 Gieryng A, Pszczolkowska D, Bocian K, Dabrowski M, Rajan WD, Kloss M, Mieczkowski J, Kaminska B. Immune microenvironment of experimental rat C6 gliomas resembles human glioblastomas. Scientific Reports. 7: 17556. PMID 29242629 DOI: 10.1038/s41598-017-17752-w  1
2017 Cook A, Mieczkowski J, Tolstorukov MY. Single-Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility. Current Protocols in Molecular Biology. 120: 21.34.1-21.34.18. PMID 28967996 DOI: 10.1002/cpmb.45  1
2017 Mueller B, Mieczkowski J, Kundu S, Wang P, Sadreyev R, Tolstorukov MY, Kingston RE. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction. Genes & Development. PMID 28356342 DOI: 10.1101/gad.293118.116  1
2016 Wang X, Lee RS, Alver BH, Haswell JR, Wang S, Mieczkowski J, Drier Y, Gillespie SM, Archer TC, Wu JN, Tzvetkov EP, Troisi EC, Pomeroy SL, Biegel JA, Tolstorukov MY, et al. SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation. Nature Genetics. PMID 27941797 DOI: 10.1038/ng.3746  1
2016 Deaton AM, Gómez-Rodríguez M, Mieczkowski J, Tolstorukov MY, Kundu S, Sadreyev RI, Jansen LE, Kingston RE. Enhancer regions show high histone H3.3 turnover that changes during differentiation. Elife. 5. PMID 27304074 DOI: 10.7554/eLife.15316  1
2016 Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY. MNase titration reveals differences between nucleosome occupancy and chromatin accessibility. Nature Communications. 7: 11485. PMID 27151365 DOI: 10.1038/ncomms11485  1
2015 Mieczkowski J, Kocyk M, Nauman P, Gabrusiewicz K, Sielska M, Przanowski P, Maleszewska M, Rajan WD, Pszczolkowska D, Tykocki T, Grajkowska W, Kotulska K, Roszkowski M, Kostkiewicz B, Kaminska B. Down-regulation of IKKβ expression in glioma-infiltrating microglia/macrophages is associated with defective inflammatory/immune gene responses in glioblastoma. Oncotarget. 6: 33077-90. PMID 26427514 DOI: 10.18632/oncotarget.5310  1
2014 Kruczyk M, Przanowski P, Dabrowski M, Swiatek-Machado K, Mieczkowski J, Wallerman O, Ronowicz A, Piotrowski A, Wadelius C, Kaminska B, Komorowski J. Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells. Biochimica Et Biophysica Acta. 1839: 1341-50. PMID 25111868 DOI: 10.1016/j.bbagrm.2014.07.010  1
2014 Przanowski P, Dabrowski M, Ellert-Miklaszewska A, Kloss M, Mieczkowski J, Kaza B, Ronowicz A, Hu F, Piotrowski A, Kettenmann H, Komorowski J, Kaminska B. The signal transducers Stat1 and Stat3 and their novel target Jmjd3 drive the expression of inflammatory genes in microglia. Journal of Molecular Medicine (Berlin, Germany). 92: 239-54. PMID 24097101 DOI: 10.1007/s00109-013-1090-5  1
2012 Mieczkowski J, Swiatek-Machado K, Kaminska B. Identification of pathway deregulation--gene expression based analysis of consistent signal transduction. Plos One. 7: e41541. PMID 22848524 DOI: 10.1371/journal.pone.0041541  1
2012 Swiatek-Machado K, Mieczkowski J, Ellert-Miklaszewska A, Swierk P, Fokt I, Szymanski S, Skora S, Szeja W, Grynkiewicz G, Lesyng B, Priebe W, Kaminska B. Novel small molecular inhibitors disrupt the JAK/STAT3 and FAK signaling pathways and exhibit a potent antitumor activity in glioma cells. Cancer Biology & Therapy. 13: 657-70. PMID 22555804 DOI: 10.4161/cbt.20083  1
2010 Dabrowski M, Dojer N, Zawadzka M, Mieczkowski J, Kaminska B. Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems. Bmc Systems Biology. 4: 86. PMID 20565733 DOI: 10.1186/1752-0509-4-86  1
2010 Mieczkowski J, Tyburczy ME, Dabrowski M, Pokarowski P. Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements. Bmc Bioinformatics. 11: 104. PMID 20181266 DOI: 10.1186/1471-2105-11-104  1
2010 Tyburczy ME, Kotulska K, Pokarowski P, Mieczkowski J, Kucharska J, Grajkowska W, Roszkowski M, Jozwiak S, Kaminska B. Novel proteins regulated by mTOR in subependymal giant cell astrocytomas of patients with tuberous sclerosis complex and new therapeutic implications. The American Journal of Pathology. 176: 1878-90. PMID 20133820 DOI: 10.2353/ajpath.2010.090950  1
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