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Robert Fairman - Publications

Affiliations: 
Haverford College, Ardmore, PA, United States 
Area:
large-scale protein polymerization
Website:
https://www.haverford.edu/users/rfairman
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70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Travis SM, Kokona B, Fairman R, Hughson FM. Roles of singleton tryptophan motifs in COPI coat stability and vesicle tethering. Proceedings of the National Academy of Sciences of the United States of America. PMID 31712447 DOI: 10.2210/Pdb6Tzt/Pdb  0.633
2018 Rivas M, Courouble VC, Baker MC, Cookmeyer DL, Fiore KE, Frost AJ, Godbe KN, Jordan MR, Krasnow EN, Mollo A, Ridings ST, Sawada K, Shroff KD, Studnitzer B, Thiele GAR, ... ... Fairman R, et al. The Effect of Divalent Cations on the Thermostability of Type II Polyketide Synthase Acyl Carrier Proteins. Aiche Journal. American Institute of Chemical Engineers. 64: 4308-4318. PMID 31527922 DOI: 10.1002/Aic.16402  0.323
2016 Boyaci H, Shah T, Hurley A, Kokona B, Li Z, Ventocilla C, Jeffrey PD, Semmelhack MF, Fairman R, Bassler BL, Hughson FM. Structure, Regulation, and Inhibition of the Quorum-Sensing Signal Integrator LuxO. Plos Biology. 14: e1002464. PMID 27219477 DOI: 10.1371/Journal.Pbio.1002464  0.65
2016 Glaubman J, Hofmann J, Bonney ME, Park S, Thomas JM, Kokona B, Ramos Falcón LI, Chung YK, Fairman R, Okeke IN. Self-association motifs in the enteroaggregative Escherichia coli heat-resistant agglutinin 1. Microbiology (Reading, England). PMID 27166217 DOI: 10.1099/Mic.0.000303  0.356
2015 Kokona B, Winesett ES, Nikolai von Krusenstiern A, Cryle MJ, Fairman R, Charkoudian LK. Probing the selectivity of beta-hydroxylation reactions in non-ribosomal peptide synthesis using analytical ultracentrifugation. Analytical Biochemistry. PMID 26655390 DOI: 10.1016/J.Ab.2015.11.011  0.436
2015 Little W, Robblee JP, Dahlberg CL, Kokona B, Fairman R. Effect of helix length on the stability of the lac repressor antiparallel coiled coil. Biopolymers. 104: 395-404. PMID 25969365 DOI: 10.1002/Bip.22676  0.501
2014 Taggart JC, Welch EZ, Mulqueen MF, Dioguardi VB, Cauer AG, Kokona B, Fairman R. Testing the role of charge and structure on the stability of peptide-porphyrin complexes. Biomacromolecules. 15: 4544-50. PMID 25371967 DOI: 10.1021/Bm5013426  0.438
2014 Kokona B, Rosenthal ZP, Fairman R. Role of the coiled-coil structural motif in polyglutamine aggregation. Biochemistry. 53: 6738-46. PMID 25310851 DOI: 10.1021/Bi500449A  0.417
2014 Kokona B, Johnson KA, Fairman R. Effect of helical flanking sequences on the morphology of polyglutamine-containing fibrils. Biochemistry. 53: 6747-53. PMID 25207433 DOI: 10.1021/Bi501066Q  0.432
2013 Taggart JC, Taggart EZ, Kokona B, Fairman R. Exploring the Interactions between a Coiled-Coil Peptide Model System and Metallated Porphyrins towards the Design of Photoelectronically Active Biomaterials Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.293  0.411
2013 Kokona B, Johnson KA, Fairman R. Using a Peptide System to test the Coiled-Coil Model of Polyglutamine Aggregation Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2161  0.498
2012 Cheng RP, Wang WR, Girinath P, Yang PA, Ahmad R, Li JH, Hart P, Kokona B, Fairman R, Kilpatrick C, Argiros A. Effect of glutamate side chain length on intrahelical glutamate-lysine ion pairing interactions. Biochemistry. 51: 7157-72. PMID 22931137 DOI: 10.1021/Bi300655Z  0.637
2011 Pepe-Mooney BJ, Kokona B, Fairman R. Characterization of mesoscale coiled-coil peptide-porphyrin complexes. Biomacromolecules. 12: 4196-203. PMID 22029379 DOI: 10.1021/Bm201354M  0.436
2011 Tsang BP, Bretscher HS, Kokona B, Manning RS, Fairman R. Thermodynamic analysis of self-assembly in coiled-coil biomaterials. Biochemistry. 50: 8548-58. PMID 21882866 DOI: 10.1021/Bi201038J  0.316
2010 Cheng RP, Girinath P, Suzuki Y, Kuo HT, Hsu HC, Wang WR, Yang PA, Gullickson D, Wu CH, Koyack MJ, Chiu HP, Weng YJ, Hart P, Kokona B, Fairman R, et al. Positional effects on helical Ala-based peptides Biochemistry. 49: 9372-9384. PMID 20925317 DOI: 10.1021/Bi101156J  0.711
2010 Smith MH, Miles TF, Sheehan M, Alfieri KN, Kokona B, Fairman R. Polyglutamine fibrils are formed using a simple designed beta-hairpin model. Proteins. 78: 1971-9. PMID 20408173 DOI: 10.1002/Prot.22713  0.345
2009 Chiu HP, Kokona B, Fairman R, Cheng RP. Effect of highly fluorinated amino acids on protein stability at a solvent-exposed position on an internal strand of protein G B1 domain. Journal of the American Chemical Society. 131: 13192-3. PMID 19711980 DOI: 10.1021/Ja903631H  0.635
2009 Pepe-Mooney BJ, Fairman R. Peptides as materials. Current Opinion in Structural Biology. 19: 483-94. PMID 19643595 DOI: 10.1016/J.Sbi.2009.07.001  0.365
2009 Kokona B, Kim AM, Roden RC, Daniels JP, Pepe-Mooney BJ, Kovaric BC, de Paula JC, Johnson KA, Fairman R. Self assembly of coiled-coil peptide-porphyrin complexes. Biomacromolecules. 10: 1454-9. PMID 19374349 DOI: 10.1021/Bm9000553  0.47
2009 Root BC, Pellegrino LD, Crawford ED, Kokona B, Fairman R. Design of a heterotetrameric coiled coil. Protein Science : a Publication of the Protein Society. 18: 329-36. PMID 19177574 DOI: 10.1002/Pro.30  0.441
2006 Chiu HP, Suzuki Y, Gullickson D, Ahmad R, Kokona B, Fairman R, Cheng RP. Helix propensity of highly fluorinated amino acids. Journal of the American Chemical Society. 128: 15556-7. PMID 17147342 DOI: 10.1021/Ja0640445  0.639
2006 Kovaric BC, Kokona B, Schwab AD, Twomey MA, de Paula JC, Fairman R. Self-assembly of peptide porphyrin complexes: toward the development of smart biomaterials. Journal of the American Chemical Society. 128: 4166-7. PMID 16568957 DOI: 10.1021/Ja056357Q  0.486
2006 Lehtiö L, Grossmann JG, Kokona B, Fairman R, Goldman A. Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus. Journal of Molecular Biology. 357: 221-35. PMID 16414072 DOI: 10.1016/J.Jmb.2005.12.049  0.306
2006 Tang L, Breinig S, Stith L, Mischel A, Tannir J, Kokona B, Fairman R, Jaffe EK. Single amino acid mutations alter the distribution of human porphobilinogen synthase quaternary structure isoforms (morpheeins). The Journal of Biological Chemistry. 281: 6682-90. PMID 16377642 DOI: 10.1074/Jbc.M511134200  0.343
2005 Cedervall T, André I, Selah C, Robblee JP, Krecioch PC, Fairman R, Linse S, Akerfeldt KS. Calbindin D28k EF-hand ligand binding and oligomerization: four high-affinity sites--three modes of action. Biochemistry. 44: 13522-32. PMID 16216075 DOI: 10.1021/Bi050861Q  0.673
2005 Rigotti DJ, Kokona B, Horne T, Acton EK, Lederman CD, Johnson KA, Manning RS, Kane SA, Smith WF, Fairman R. Quantitative atomic force microscopy image analysis of unusual filaments formed by the Acanthamoeba castellanii myosin II rod domain. Analytical Biochemistry. 346: 189-200. PMID 16213459 DOI: 10.1016/J.Ab.2005.08.026  0.305
2005 Wagner DE, Phillips CL, Ali WM, Nybakken GE, Crawford ED, Schwab AD, Smith WF, Fairman R. Toward the development of peptide nanofilaments and nanoropes as smart materials. Proceedings of the National Academy of Sciences of the United States of America. 102: 12656-61. PMID 16129839 DOI: 10.1073/Pnas.0505871102  0.411
2005 Fairman R, Akerfeldt KS. Peptides as novel smart materials. Current Opinion in Structural Biology. 15: 453-63. PMID 16043341 DOI: 10.1016/J.Sbi.2005.07.005  0.718
2005 Dunetz JR, Sandstrom C, Young ER, Baker P, Van Name SA, Cathopolous T, Fairman R, de Paula JC, Akerfeldt KS. Self-assembling porphyrin-modified peptides. Organic Letters. 7: 2559-61. PMID 15957890 DOI: 10.1021/Ol050644H  0.69
2004 Chowdhury FA, Fairman R, Bi Y, Rigotti DJ, Raleigh DP. Protein dissection experiments reveal key differences in the equilibrium folding of alpha-lactalbumin and the calcium binding lysozymes. Biochemistry. 43: 9961-7. PMID 15287723 DOI: 10.1021/Bi049277S  0.567
2004 Tang Y, Rigotti DJ, Fairman R, Raleigh DP. Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain. Biochemistry. 43: 3264-72. PMID 15023077 DOI: 10.1021/Bi035652P  0.66
2003 Breinig S, Kervinen J, Stith L, Wasson AS, Fairman R, Wlodawer A, Zdanov A, Jaffe EK. Control of tetrapyrrole biosynthesis by alternate quaternary forms of porphobilinogen synthase. Nature Structural Biology. 10: 757-63. PMID 12897770 DOI: 10.1038/Nsb963  0.346
2003 Joglekar AP, Xu D, Rigotti DJ, Fairman R, Hay JC. The SNARE motif contributes to rbet1 intracellular targeting and dynamics independently of SNARE interactions. The Journal of Biological Chemistry. 278: 14121-33. PMID 12566453 DOI: 10.1074/Jbc.M300659200  0.356
2002 Horng JC, Moroz V, Rigotti DJ, Fairman R, Raleigh DP. Characterization of large peptide fragments derived from the N-terminal domain of the ribosomal protein L9: definition of the minimum folding motif and characterization of local electrostatic interactions. Biochemistry. 41: 13360-9. PMID 12416980 DOI: 10.1021/Bi026410C  0.604
2002 Solan A, Ratia K, Fairman R. Exploring the role of alanine in the structure of the Lac repressor tetramerization domain, a ferritin-like Alacoil. Journal of Molecular Biology. 317: 601-12. PMID 11955012 DOI: 10.1006/Jmbi.2002.5427  0.399
2002 Julenius K, Robblee J, Thulin E, Finn BE, Fairman R, Linse S. Coupling of ligand binding and dimerization of helix-loop-helix peptides: spectroscopic and sedimentation analyses of calbindin D9k EF-hands. Proteins. 47: 323-33. PMID 11948786 DOI: 10.1002/Prot.10080  0.38
2001 Wu JW, Hu M, Chai J, Seoane J, Huse M, Li C, Rigotti DJ, Kyin S, Muir TW, Fairman R, Massagué J, Shi Y. Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling. Molecular Cell. 8: 1277-89. PMID 11779503 DOI: 10.1016/S1097-2765(01)00421-X  0.3
2001 Szwajkajzer D, Dai L, Fukayama JW, Abramczyk B, Fairman R, Carey J. Quantitative analysis of DNA binding by the Escherichia coli arginine repressor. Journal of Molecular Biology. 312: 949-62. PMID 11580241 DOI: 10.1006/Jmbi.2001.4941  0.575
2001 Vu C, Robblee J, Werner KM, Fairman R. Effects of charged amino acids at b and c heptad positions on specificity and stability of four-chain coiled coils. Protein Science : a Publication of the Protein Society. 10: 631-7. PMID 11344331 DOI: 10.1110/Ps.41101  0.429
2001 Demarest SJ, Zhou SQ, Robblee J, Fairman R, Chu B, Raleigh DP. A comparative study of peptide models of the alpha-domain of alpha-lactalbumin, lysozyme, and alpha-lactalbumin/lysozyme chimeras allows the elucidation of critical factors that contribute to the ability to form stable partially folded states. Biochemistry. 40: 2138-47. PMID 11329282 DOI: 10.1021/Bi001975Z  0.593
2000 Lerman JC, Robblee J, Fairman R, Hughson FM. Structural analysis of the neuronal SNARE protein syntaxin-1A. Biochemistry. 39: 8470-9. PMID 10913252 DOI: 10.1021/Bi0003994  0.655
2000 Spector S, Wang M, Carp SA, Robblee J, Hendsch ZS, Fairman R, Tidor B, Raleigh DP. Rational modification of protein stability by the mutation of charged surface residues. Biochemistry. 39: 872-9. PMID 10653630 DOI: 10.1021/Bi992091M  0.61
2000 Moriarty DF, Demarest SJ, Robblee J, Fairman R, Raleigh DP. Local interactions and the role of the 6-120 disulfide bond in alpha-lactalbumin: implications for formation of the molten globule state. Biochimica Et Biophysica Acta. 1476: 9-19. PMID 10606762 DOI: 10.1016/S0167-4838(99)00219-8  0.657
1999 Demarest SJ, Boice JA, Fairman R, Raleigh DP. Defining the core structure of the alpha-lactalbumin molten globule state. Journal of Molecular Biology. 294: 213-21. PMID 10556040 DOI: 10.1006/Jmbi.1999.3228  0.658
1998 Demarest SJ, Fairman R, Raleigh DP. Peptide models of local and long-range interactions in the molten globule state of human alpha-lactalbumin. Journal of Molecular Biology. 283: 279-91. PMID 9761690 DOI: 10.1006/Jmbi.1998.2099  0.652
1998 Nicholson KL, Munson M, Miller RB, Filip TJ, Fairman R, Hughson FM. Regulation of SNARE complex assembly by an N-terminal domain of the t-SNARE Sso1p. Nature Structural Biology. 5: 793-802. PMID 9731774 DOI: 10.1038/1834  0.644
1998 Grandori R, Khalifah P, Boice JA, Fairman R, Giovanielli K, Carey J. Biochemical characterization of WrbA, founding member of a new family of multimeric flavodoxin-like proteins. The Journal of Biological Chemistry. 273: 20960-6. PMID 9694845 DOI: 10.1074/Jbc.273.33.20960  0.594
1998 Spector S, Kuhlman B, Fairman R, Wong E, Boice JA, Raleigh DP. Cooperative folding of a protein mini domain: the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex. Journal of Molecular Biology. 276: 479-89. PMID 9512717 DOI: 10.1006/Jmbi.1997.1522  0.649
1998 Kuhlman B, Boice JA, Fairman R, Raleigh DP. Structure and stability of the N-terminal domain of the ribosomal protein L9: evidence for rapid two-state folding. Biochemistry. 37: 1025-32. PMID 9454593 DOI: 10.1021/Bi972352X  0.591
1997 Kuhlman B, Yang HY, Boice JA, Fairman R, Raleigh DP. An exceptionally stable helix from the ribosomal protein L9: implications for protein folding and stability. Journal of Molecular Biology. 270: 640-7. PMID 9245593 DOI: 10.1006/Jmbi.1997.1146  0.646
1997 Kuhlman B, Boice JA, Wu WJ, Fairman R, Raleigh DP. Calcium binding peptides from alpha-lactalbumin: implications for protein folding and stability. Biochemistry. 36: 4607-15. PMID 9109670 DOI: 10.1021/Bi962901J  0.603
1997 Axley MJ, Fairman R, Yanchunas J, Villafranca JJ, Robertson JG. Spectroscopic properties of Escherichia coli UDP-N-acetylenolpyruvylglucosamine reductase. Biochemistry. 36: 812-22. PMID 9020779 DOI: 10.1021/Bi962260S  0.313
1997 Fairman R, Beran-Steed RK, Handel TM. Heteronuclear (1H, 13C, 15N) NMR assignments and secondary structure of the basic region-helix-loop-helix domain of E47 Protein Science. 6: 175-184. PMID 9007990 DOI: 10.1002/Pro.5560060120  0.626
1997 Roy S, Ratnaswamy G, Boice JA, Fairman R, McLendon G, Hecht MH. A protein designed by binary patterning of polar and nonpolar amino acids displays native-like properties Journal of the American Chemical Society. 119: 5302-5306. DOI: 10.1021/Ja9700717  0.379
1996 Boice JA, Dieckmann GR, DeGrado WF, Fairman R. Thermodynamic analysis of a designed three-stranded coiled coil Biochemistry. 35: 14480-14485. PMID 8931544 DOI: 10.1021/Bi961831D  0.755
1996 Boice JA, Fairman R. Structural characterization of the tumor suppressor p16, an ankyrin‐like repeat protein Protein Science. 5: 1776-1784. PMID 8880901 DOI: 10.1002/Pro.5560050903  0.376
1996 Jin H, Emanuele JJ, Fairman R, Robertson JG, Hail ME, Ho HT, Falk PJ, Villafranca JJ. Structural studies of Escherichia coli UDP-N-acetylmuramate:L-alanine ligase. Biochemistry. 35: 1423-31. PMID 8634272 DOI: 10.1021/Bi952334K  0.331
1996 Fairman R, Chao HG, Lavoie TB, Villafranca JJ, Matsueda GR, Novotny J. Design of heterotetrameric coiled coils: evidence for increased stabilization by Glu(-)-Lys(+) ion pair interactions. Biochemistry. 35: 2824-9. PMID 8608117 DOI: 10.1021/Bi952784C  0.427
1995 Fairman R, Chao HG, Mueller L, Lavoie TB, Shen L, Novotny J, Matsueda GR. Characterization of a new four-chain coiled-coil: influence of chain length on stability. Protein Science : a Publication of the Protein Society. 4: 1457-69. PMID 8520471 DOI: 10.1002/Pro.5560040803  0.444
1995 Betz S, Fairman R, O'Neil K, Lear J, Degrado W. Design of two-stranded and three-stranded coiled-coil peptides. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 348: 81-8. PMID 7770490 DOI: 10.1098/Rstb.1995.0048  0.761
1995 Grandori R, Lavoie TA, Pflumm M, Tian G, Niersbach H, Maas WK, Fairman R, Carey J. The DNA-binding domain of the hexameric arginine repressor. Journal of Molecular Biology. 254: 150-62. PMID 7490739 DOI: 10.1006/Jmbi.1995.0607  0.617
1993 Armstrong KM, Fairman R, Baldwin RL. The (i, i + 4) Phe-His interaction studied in an alanine-based alpha-helix. Journal of Molecular Biology. 230: 284-91. PMID 8450542 DOI: 10.1006/Jmbi.1993.1142  0.559
1993 Fairman R, Beran-Steed RK, Anthony-Cahill SJ, Lear JD, Stafford WF, DeGrado WF, Benfield PA, Brenner SL. Multiple oligomeric states regulate the DNA binding of helix-loop-helix peptides. Proceedings of the National Academy of Sciences of the United States of America. 90: 10429-33. PMID 8248126 DOI: 10.1073/Pnas.90.22.10429  0.785
1992 Anthony-Cahill SJ, Benfield PA, Fairman R, Wasserman ZR, Brenner SL, Stafford WF, Altenbach C, Hubbell WL, DeGrado WF. Molecular characterization of helix-loop-helix peptides. Science (New York, N.Y.). 255: 979-83. PMID 1312255 DOI: 10.1126/Science.1312255  0.796
1992 Fairman R, Anthony-Cahill SJ, DeGrado WF. The helix-forming propensity of D-alanine in a right-handed α-helix Journal of the American Chemical Society. 114: 5458-5459. DOI: 10.1021/Ja00039A086  0.734
1991 Fairman R, Armstrong KM, Shoemaker KR, York EJ, Stewart JM, Baldwin RL. Position effect on apparent helical propensities in the C-peptide helix. Journal of Molecular Biology. 221: 1395-401. PMID 1942058 DOI: 10.1016/0022-2836(91)90940-8  0.602
1990 Shoemaker KR, Fairman R, Schultz DA, Robertson AD, York EJ, Stewart JM, Baldwin RL. Side-chain interactions in the C-peptide helix: Phe 8 ... His 12+. Biopolymers. 29: 1-11. PMID 2328280 DOI: 10.1002/Bip.360290104  0.704
1990 Fairman R, Shoemaker KR, York EJ, Stewart JM, Baldwin RL. The Glu 2- ... Arg 10+ side-chain interaction in the C-peptide helix of ribonuclease A. Biophysical Chemistry. 37: 107-19. PMID 1981024 DOI: 10.1016/0301-4622(90)88012-H  0.633
1989 Fairman R, Shoemaker KR, York EJ, Stewart JM, Baldwin RL. Further studies of the helix dipole model: effects of a free alpha-NH3+ or alpha-COO- group on helix stability. Proteins. 5: 1-7. PMID 2748569 DOI: 10.1002/Prot.340050102  0.541
1987 Shoemaker KR, Fairman R, Kim PS, York EJ, Stewart JM, Baldwin RL. The C-peptide helix from ribonuclease A considered as an autonomous folding unit. Cold Spring Harbor Symposia On Quantitative Biology. 52: 391-8. PMID 3454268 DOI: 10.1101/Sqb.1987.052.01.045  0.656
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