| Year |
Citation |
Score |
| 2024 |
Sun L, David KT, Wolters JF, Karlen SD, Gonçalves C, Opulente DA, LaBella AL, Groenewald M, Zhou X, Shen XX, Rokas A, Hittinger CT. Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular Biology and Evolution. PMID 38415839 DOI: 10.1093/molbev/msae045 |
0.697 |
|
| 2024 |
David KT, Harrison MC, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Pennell M, Hittinger CT, Rokas A. Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316031121. PMID 38412132 DOI: 10.1073/pnas.2316031121 |
0.68 |
|
| 2023 |
Wolters JF, LaBella AL, Opulente DA, Rokas A, Hittinger CT. Mitochondrial genome diversity across the subphylum Saccharomycotina. Frontiers in Microbiology. 14: 1268944. PMID 38075892 DOI: 10.3389/fmicb.2023.1268944 |
0.725 |
|
| 2023 |
Gonçalves C, Harrison MC, Steenwyk JL, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Hittinger CT, Rokas A. Diverse signatures of convergent evolution in cacti-associated yeasts. Biorxiv : the Preprint Server For Biology. PMID 37745407 DOI: 10.1101/2023.09.14.557833 |
0.796 |
|
| 2023 |
David KT, Harrison MC, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Pennell M, Hittinger CT, Rokas A. Saccharomycotina yeasts defy longstanding macroecological patterns. Biorxiv : the Preprint Server For Biology. PMID 37693602 DOI: 10.1101/2023.08.29.555417 |
0.746 |
|
| 2023 |
Wolters JF, LaBella AL, Opulente DA, Rokas A, Hittinger CT. Mitochondrial Genome Diversity across the Subphylum Saccharomycotina. Biorxiv : the Preprint Server For Biology. PMID 37577532 DOI: 10.1101/2023.07.28.551029 |
0.732 |
|
| 2023 |
Opulente DA, LaBella AL, Harrison MC, Wolters JF, Liu C, Li Y, Kominek J, Steenwyk JL, Stoneman HR, VanDenAvond J, Miller CR, Langdon QK, Silva M, Gonçalves C, Ubbelohde EJ, et al. Genomic and ecological factors shaping specialism and generalism across an entire subphylum. Biorxiv : the Preprint Server For Biology. PMID 37425695 DOI: 10.1101/2023.06.19.545611 |
0.771 |
|
| 2023 |
Solé-Navais P, Flatley C, Steinthorsdottir V, Vaudel M, Juodakis J, Chen J, Laisk T, LaBella AL, Westergaard D, Bacelis J, Brumpton B, Skotte L, Borges MC, Helgeland Ø, Mahajan A, et al. Author Correction: Genetic effects on the timing of parturition and links to fetal birth weight. Nature Genetics. PMID 37165137 DOI: 10.1038/s41588-023-01412-z |
0.576 |
|
| 2023 |
Nalabothu RL, Fisher KJ, LaBella AL, Meyer TA, Opulente DA, Wolters JF, Rokas A, Hittinger CT. Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts. Molecular Biology and Evolution. PMID 37154525 DOI: 10.1093/molbev/msad111 |
0.725 |
|
| 2023 |
Solé-Navais P, Flatley C, Steinthorsdottir V, Vaudel M, Juodakis J, Chen J, Laisk T, LaBella AL, Westergaard D, Bacelis J, Brumpton B, Skotte L, Borges MC, Helgeland Ø, Mahajan A, et al. Genetic effects on the timing of parturition and links to fetal birth weight. Nature Genetics. PMID 37012456 DOI: 10.1038/s41588-023-01343-9 |
0.635 |
|
| 2023 |
Abraham A, LaBella AL, Benton ML, Rokas A, Capra JA. GSEL: A fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic. Bioinformatics (Oxford, England). PMID 36655767 DOI: 10.1093/bioinformatics/btad037 |
0.717 |
|
| 2022 |
Abraham A, LaBella AL, Capra JA, Rokas A. Mosaic patterns of selection in genomic regions associated with diverse human traits. Plos Genetics. 18: e1010494. PMID 36342969 DOI: 10.1371/journal.pgen.1010494 |
0.706 |
|
| 2022 |
Li Y, Liu H, Steenwyk JL, LaBella AL, Harrison MC, Groenewald M, Zhou X, Shen XX, Zhao T, Hittinger CT, Rokas A. Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum. Current Biology : Cb. PMID 36334587 DOI: 10.1016/j.cub.2022.10.025 |
0.796 |
|
| 2022 |
Hugaboom M, Hatmaker EA, LaBella AL, Rokas A. Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi. G3 (Bethesda, Md.). PMID 36305682 DOI: 10.1093/g3journal/jkac285 |
0.836 |
|
| 2022 |
Colabardini AC, Van Rhijn N, LaBella AL, Valero C, Dineen L, Rokas A, Goldman GH. Aspergillus fumigatus FhdA Transcription Factor Is Important for Mitochondrial Activity and Codon Usage Regulation during the Caspofungin Paradoxical Effect. Antimicrobial Agents and Chemotherapy. e0070122. PMID 35916517 DOI: 10.1128/aac.00701-22 |
0.613 |
|
| 2022 |
Markowitz RHG, LaBella AL, Shi M, Rokas A, Capra JA, Ferguson JF, Mosley JD, Bordenstein SR. Microbiome-associated human genetic variants impact phenome-wide disease risk. Proceedings of the National Academy of Sciences of the United States of America. 119: e2200551119. PMID 35749358 DOI: 10.1073/pnas.2200551119 |
0.658 |
|
| 2022 |
Steenwyk JL, Buida Iii TJ, Gonçalves C, Goltz DC, Morales G, Mead ME, LaBella AL, Chavez CM, Schmitz JE, Hadjifrangiskou M, Li Y, Rokas A. BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data. Genetics. PMID 35536198 DOI: 10.1093/genetics/iyac079 |
0.755 |
|
| 2021 |
LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Correction: Variation and selection on codon usage bias across an entire subphylum. Plos Genetics. 17: e1009824. PMID 34570754 DOI: 10.1371/journal.pgen.1009824 |
0.72 |
|
| 2021 |
Harrison MC, LaBella AL, Hittinger CT, Rokas A. The evolution of the GALactose utilization pathway in budding yeasts. Trends in Genetics : Tig. PMID 34538504 DOI: 10.1016/j.tig.2021.08.013 |
0.797 |
|
| 2021 |
Steenwyk JL, Mead ME, de Castro PA, Valero C, Damasio A, Dos Santos RAC, Labella AL, Li Y, Knowles SL, Raja HA, Oberlies NH, Zhou X, Cornely OA, Fuchs F, Koehler P, et al. Genomic and Phenotypic Analysis of COVID-19-Associated Pulmonary Aspergillosis Isolates of Aspergillus fumigatus. Microbiology Spectrum. e0001021. PMID 34106569 DOI: 10.1128/Spectrum.00010-21 |
0.787 |
|
| 2021 |
LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Signatures of optimal codon usage in metabolic genes inform budding yeast ecology. Plos Biology. 19: e3001185. PMID 33872297 DOI: 10.1371/journal.pbio.3001185 |
0.808 |
|
| 2021 |
Haase MAB, Kominek J, Opulente DA, Shen XX, LaBella AL, Zhou X, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo's law of irreversible loss. Genetics. 217. PMID 33724406 DOI: 10.1093/genetics/iyaa012 |
0.82 |
|
| 2021 |
Steenwyk JL, Buida TJ, Labella AL, Li Y, Shen XX, Rokas A. PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data. Bioinformatics (Oxford, England). PMID 33560364 DOI: 10.1093/bioinformatics/btab096 |
0.779 |
|
| 2021 |
Benton ML, Abraham A, LaBella AL, Abbot P, Rokas A, Capra JA. The influence of evolutionary history on human health and disease. Nature Reviews. Genetics. PMID 33408383 DOI: 10.1038/s41576-020-00305-9 |
0.661 |
|
| 2020 |
Rokas A, Mesiano S, Tamam O, LaBella A, Zhang G, Muglia L. Developing a theoretical evolutionary framework to solve the mystery of parturition initiation. Elife. 9. PMID 33380346 DOI: 10.7554/eLife.58343 |
0.616 |
|
| 2020 |
Steenwyk JL, Mead ME, de Castro PA, Valero C, Damasio A, Dos Santos RAC, Labella AL, Li Y, Knowles SL, Raja HA, Oberlies NH, Zhou X, Cornely OA, Fuchs F, Koehler P, et al. Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of . Biorxiv : the Preprint Server For Biology. PMID 33173866 DOI: 10.1101/2020.11.06.371971 |
0.797 |
|
| 2020 |
Shen XX, Steenwyk JL, LaBella AL, Opulente DA, Zhou X, Kominek J, Li Y, Groenewald M, Hittinger CT, Rokas A. Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science Advances. 6. PMID 33148650 DOI: 10.1126/sciadv.abd0079 |
0.82 |
|
| 2020 |
LaBella AL, Abraham A, Pichkar Y, Fong SL, Zhang G, Muglia LJ, Abbot P, Rokas A, Capra JA. Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci. Nature Communications. 11: 3731. PMID 32709900 DOI: 10.1038/S41467-020-17258-6 |
0.707 |
|
| 2019 |
Ely ZA, Moon JM, Sliwoski GR, Sangha AK, Shen XX, Labella AL, Meiler J, Capra JA, Rokas A. The impact of natural selection on the evolution and function of placentally expressed galectins. Genome Biology and Evolution. PMID 31504490 DOI: 10.1093/Gbe/Evz183 |
0.805 |
|
| 2019 |
Labella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Variation and selection on codon usage bias across an entire subphylum. Plos Genetics. 15: e1008304. PMID 31365533 DOI: 10.1371/Journal.Pgen.1008304 |
0.833 |
|
| 2019 |
Plouviez S, LaBella AL, Weisrock DW, von Meijenfeldt FAB, Ball B, Neigel JE, Van Dover CL. Amplicon sequencing of 42 nuclear loci supports directional gene flow between South Pacific populations of a hydrothermal vent limpet. Ecology and Evolution. 9: 6568-6580. PMID 31312428 DOI: 10.1002/Ece3.5235 |
0.367 |
|
| 2019 |
Steenwyk JL, Opulente DA, Kominek J, Shen XX, Zhou X, Labella AL, Bradley NP, Eichman BF, Čadež N, Libkind D, DeVirgilio J, Hulfachor AB, Kurtzman CP, Hittinger CT, Rokas A. Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. Plos Biology. 17: e3000255. PMID 31112549 DOI: 10.1371/Journal.Pbio.3000255 |
0.801 |
|
| 2017 |
Jang YJ, LaBella AL, Feeney TP, Braverman N, Tuchman M, Morizono H, Mew NA, Caldovic L. Disease-causing mutations in the promoter and enhancer of the Ornithine Transcarbamylase gene. Human Mutation. PMID 29282796 DOI: 10.1002/Humu.23394 |
0.421 |
|
| 2017 |
LaBella AL, Van Dover CL, Jollivet D, Cunningham CW. Gene flow between Atlantic and Pacific Ocean basins in three lineages of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) and subsequent limited gene flow within the Atlantic Deep Sea Research Part Ii: Topical Studies in Oceanography. 137: 307-317. DOI: 10.1016/J.Dsr2.2016.08.013 |
0.573 |
|
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