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Michelle Stitzer - Publications

Affiliations: 
2013- Evolution & Ecology University of California, Davis, Davis, CA 
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Munasinghe M, Read A, Stitzer MC, Song B, Menard CC, Ma KY, Brandvain Y, Hirsch CN, Springer N. Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion. Plos Genetics. 19: e1011086. PMID 38134220 DOI: 10.1371/journal.pgen.1011086  0.458
2023 Yang N, Wang Y, Liu X, Jin M, Vallebueno-Estrada M, Calfee E, Chen L, Dilkes BP, Gui S, Fan X, Harper TK, Kennett DJ, Li W, Lu Y, Ding J, ... ... Stitzer MC, et al. Two teosintes made modern maize. Science (New York, N.Y.). 382: eadg8940. PMID 38033071 DOI: 10.1126/science.adg8940  0.691
2023 Song B, Buckler ES, Stitzer MC. New whole-genome alignment tools are needed for tapping into plant diversity. Trends in Plant Science. PMID 37749022 DOI: 10.1016/j.tplants.2023.08.013  0.488
2022 Wu Y, Johnson L, Song B, Romay C, Stitzer M, Siepel A, Buckler E, Scheben A. A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants. The Plant Genome. e20204. PMID 35416423 DOI: 10.1002/tpg2.20204  0.412
2022 Horvath R, Menon M, Stitzer M, Ross-Ibarra J. Controlling for variable transposition rate with an age-adjusted site frequency spectrum. Genome Biology and Evolution. PMID 35104327 DOI: 10.1093/gbe/evac016  0.68
2022 Fournier-Level A, Taylor MA, Paril JF, Martínez-Berdeja A, Stitzer MC, Cooper MD, Roe JL, Wilczek AM, Schmitt J. Adaptive significance of flowering time variation across natural seasonal environments in Arabidopsis thaliana. The New Phytologist. PMID 35090191 DOI: 10.1111/nph.17999  0.302
2022 Song B, Marco-Sola S, Moreto M, Johnson L, Buckler ES, Stitzer MC. AnchorWave: Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism, and whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34934012 DOI: 10.1073/pnas.2113075119  0.449
2021 Stitzer MC, Anderson SN, Springer NM, Ross-Ibarra J. The genomic ecosystem of transposable elements in maize. Plos Genetics. 17: e1009768. PMID 34648488 DOI: 10.1371/journal.pgen.1009768  0.691
2019 Anderson SN, Stitzer MC, Zhou P, Ross-Ibarra J, Hirsch CD, Springer NM. Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.). PMID 31506319 DOI: 10.1534/G3.119.400431  0.62
2019 Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer MC, Seymour DK, Doebley JF, Liu Q, Gaut BS. The genome-wide dynamics of purging during selfing in maize. Nature Plants. PMID 31477888 DOI: 10.1038/S41477-019-0508-7  0.659
2019 Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Transposable elements contribute to dynamic genome content in maize. The Plant Journal : For Cell and Molecular Biology. PMID 31381222 DOI: 10.1111/Tpj.14489  0.69
2019 Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, et al. Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics. PMID 31320409 DOI: 10.1534/Genetics.119.302378  0.728
2018 Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, ... ... Stitzer MC, et al. The maize W22 genome provides a foundation for functional genomics and transposon biology. Nature Genetics. PMID 30061736 DOI: 10.1038/S41588-018-0158-0  0.758
2018 Stitzer MC, Ross-Ibarra J. Maize domestication and gene interaction. The New Phytologist. PMID 30035321 DOI: 10.1111/Nph.15350  0.63
2018 Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, et al. A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize. Cell. PMID 29628142 DOI: 10.1016/J.Cell.2018.03.009  0.554
2018 Mei W, Stetter MG, Gates DJ, Stitzer MC, Ross-Ibarra J. Adaptation in plant genomes: Bigger is different. American Journal of Botany. 105: 16-19. PMID 29532920 DOI: 10.1002/Ajb2.1002  0.689
2017 Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, et al. Improved maize reference genome with single-molecule technologies. Nature. PMID 28605751 DOI: 10.1038/Nature22971  0.689
2015 Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress. Plos Genetics. 11: e1005566. PMID 26452261 DOI: 10.1371/Journal.Pgen.1005566  0.569
2015 Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Transposable elements contribute to activation of maize genes in response to abiotic stress. Plos Genetics. 11: e1004915. PMID 25569788 DOI: 10.1371/Journal.Pgen.1004915  0.625
2007 Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S. Using expression arrays for copy number detection: an example from E. coli. Bmc Bioinformatics. 8: 203. PMID 17570850 DOI: 10.1186/1471-2105-8-203  0.315
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