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Mark S.P. Sansom - Publications

Affiliations: 
Biochemistry University of Oxford, Oxford, United Kingdom 
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Year Citation  Score
2020 Duncan AL, Bandurka MA, Song W, Sansom MS. Modelling the Dynamic Organisation of the β2-Adrenergic Receptor in Crowded Membranes: From the Nano to the Mesoscale Biophysical Journal. 118: 17a. DOI: 10.1016/J.Bpj.2019.11.277  0.324
2020 Tsui CC(, Saotome K, Teng B, Lee W, Tu Y, Jojoa-Cruz S, Liman ER, Ward AB, Sansom MS. Molecular Dynamics Simulations Studies of the Proton Channel Otopetrin and Other Mechanically-Activated Ion Channels Biophysical Journal. 118: 274a-275a. DOI: 10.1016/J.Bpj.2019.11.1577  0.501
2020 Rao S, Klesse G, Tucker SJ, Sansom MS. Annotating Ion Channel Pores: Structures, Hydrophobicity and the Threshold for Permeation Biophysical Journal. 118: 272a. DOI: 10.1016/J.Bpj.2019.11.1565  0.654
2019 Wang Q, Hedger G, Aryal P, Grieben M, Pike AC, Shi J, Carpenter EP, Sansom MS. Understanding Protein-Lipid Interactions of TRP Channels of the Polycystin Family, through MD Simulations and Structural Studies Biophysical Journal. 116: 534a-535a. DOI: 10.1016/J.Bpj.2018.11.2877  0.737
2019 Duncan AL, Bandurka MA, Chavent MG, Rassam P, Song W, Birkholz O, Helie J, Reddy T, Beliaev D, Hambly B, Piehler J, Kleanthous C, Sansom MS. How Nanoscale Protein Interactions Determine the Mesoscale Dynamic Organisation of Membrane Proteins Biophysical Journal. 116: 365a. DOI: 10.1016/J.Bpj.2018.11.1984  0.363
2019 Rao S, Klesse G, Stansfeld PJ, Tucker SJ, Sansom MS. Functional Annotation of Ion Channel Structures: Predicting Pore Solvation States Based on Local Radius and Hydrophobicity Biophysical Journal. 116: 241a. DOI: 10.1016/J.Bpj.2018.11.1321  0.633
2019 Chun(Alex) Tsui C, Saotome K, Jojoa Cruz S, Ward AB, Sansom MS. Probing the Mechanosensing Features of Mammalian Piezo Channels and Plant OSCA Channels via Molecular Dynamics Simulations Biophysical Journal. 116: 219a. DOI: 10.1016/J.Bpj.2018.11.1210  0.457
2018 Jojoa Cruz S, Saotome K, Murthy SE, Tsui CCA, Sansom MS, Patapoutian A, Ward AB. Cryo-EM structure of the mechanically activated ion channel OSCA1.2. Elife. 7. PMID 30382939 DOI: 10.7554/eLife.41845  0.446
2018 Baaden M, Barboiu M, Bill RM, Chen CL, Davis J, Di Vincenzo M, Freger V, Fröba M, Gale PA, Gong B, Hélix-Nielsen C, Hickey R, Hinds B, Hou JL, Hummer G, ... ... Sansom M, et al. Biomimetic water channels: general discussion. Faraday Discussions. PMID 30225508 DOI: 10.1039/C8Fd90020E  0.401
2018 Rao S, Klesse G, Tucker SJ, Sansom MS. Hydrophobic Gating: Examination of Recent Ion Channel Structures Biophysical Journal. 114: 134a. DOI: 10.1016/J.Bpj.2017.11.762  0.652
2018 Klesse G, Rao S, Stansfeld PJ, Sansom MS, Tucker SJ. A Newly Available Tool for Functional Annotation of Ion Channel Structures Based on Molecular Dynamics Simulations Biophysical Journal. 114: 134a. DOI: 10.1016/J.Bpj.2017.11.761  0.659
2018 Amos S, Kalli AC, Shi J, Sansom MS. Multiscale Simulations of Membrane Recognition by Lipid Kinases Biophysical Journal. 114: 613a. DOI: 10.1016/J.Bpj.2017.11.3753  0.36
2018 Sansom MS, Duncan AL, Chavent M. Crowded and Complex: Molecular Simulations of Biological Membranes Biophysical Journal. 114: 400a. DOI: 10.1016/J.Bpj.2017.11.2215  0.375
2018 Wang Q, Hedger G, Aryal P, Shi J, Carpenter EP, Sansom MS. A PIP2 Binding Site on a Human TRP Channel: Simulation Studies of PKD2 Biophysical Journal. 114: 397a. DOI: 10.1016/J.Bpj.2017.11.2196  0.704
2018 Duncan AL, Chavent M, Rassam P, Hélie J, Reddy T, Birkholz O, Belyaev D, Hambly B, Piehler J, Kleanthous C, Sansom MS. Nanoscale Protein Interactions Determine the Mesoscale Dynamic Organisation of Biomembranes Biophysical Journal. 114: 391a. DOI: 10.1016/J.Bpj.2017.11.2163  0.312
2018 Naughton FB, Kalli AC, Sansom MS. Structural and Energetic Details of the Binding of PTEN to Phosphatidylinositol Phosphate-Containing Membranes through Molecular Simulations Biophysical Journal. 114: 277a. DOI: 10.1016/J.Bpj.2017.11.1597  0.427
2018 Song W, Sansom MS. State Dependent Interactions of Lipids with GPCR Revealed by MD Simulations using In Vivo-Mimetic Membranes Biophysical Journal. 114: 274a. DOI: 10.1016/J.Bpj.2017.11.1584  0.402
2018 Best RB, Domanski J, Sansom MS, Stansfeld P. Mechanism of Assembly of a Transmembrane Helix Dimer from All-Atom Simulation Biophysical Journal. 114: 244a-245a. DOI: 10.1016/J.Bpj.2017.11.1361  0.312
2017 Aryal P, Jarerattanachat V, Clausen MV, Schewe M, McClenaghan C, Argent L, Conrad LJ, Dong YY, Pike AC, Carpenter EP, Baukrowitz T, Sansom MS, Tucker SJ. Bilayer-Mediated Structural Transitions Control Mechanosensitivity of the TREK-2 K2P Channel. Structure (London, England : 1993). PMID 28392258 DOI: 10.1016/J.Str.2017.03.006  0.815
2017 Rao S, Klesse G, Stansfeld PJ, Tucker SJ, Sansom MS. A BEST Example of Channel Structure Annotation by Molecular Simulation. Channels (Austin, Tex.). 0. PMID 28319451 DOI: 10.1080/19336950.2017.1306163  0.681
2017 Maingi V, Burns JR, Uusitalo JJ, Howorka S, Marrink SJ, Sansom MS. Stability and dynamics of membrane-spanning DNA nanopores. Nature Communications. 8: 14784. PMID 28317903 DOI: 10.1038/Ncomms14784  0.41
2017 Willems N, Urtizberea A, Verre AF, Iliut M, Lelimousin M, Hirtz M, Vijayaraghavan A, Sansom MS. Biomimetic Phospholipid Membrane Organization on Graphene and Graphene Oxide Surfaces: a Molecular Dynamics Simulation Study. Acs Nano. PMID 28165704 DOI: 10.1021/Acsnano.6B07352  0.349
2017 Trick JL, Song C, Wallace EJ, Sansom MS. Voltage Gating of a Biomimetic Nanopore: Electrowetting of a Hydrophobic Barrier. Acs Nano. PMID 28141923 DOI: 10.1021/Acsnano.6B07865  0.431
2017 Yamamoto E, Akimoto T, Kalli AC, Yasuoka K, Sansom MS. Dynamic interactions between a membrane binding protein and lipids induce fluctuating diffusivity. Science Advances. 3: e1601871. PMID 28116358 DOI: 10.1126/Sciadv.1601871  0.371
2017 Fowler PW, Sansom MS, Reithmeier RA. Effect of the Southeast Asian Ovalocytosis Deletion on the Conformational Dynamics of the Signal-Anchor Transmembrane Segment 1 of the Red Cell Anion Exchanger 1 (AE1, Band 3, SLC4A1). Biochemistry. PMID 28068080 DOI: 10.1021/Acs.Biochem.6B00966  0.437
2017 Willems N, Lelimousin M, Koldsø H, Sansom MS. Interfacial activation of M37 lipase: A multi-scale simulation study. Biochimica Et Biophysica Acta. 1859: 340-349. PMID 27993564 DOI: 10.1016/J.Bbamem.2016.12.012  0.368
2017 Jarerattanachat V, Clausen MV, Aryal P, Carpenter EP, Sansom MS, Tucker SJ. Structural and Functional Response of a Mechanosensitive K2P K + Channel to Asymmetric Membrane Tension Biophysical Journal. 112: 545a. DOI: 10.1016/J.Bpj.2016.11.2945  0.77
2017 Michelarakis N, Sands ZA, Sansom MS, Stansfeld PJ. Towards Dynamic Pharmacophore Models by Coarse Grain Molecular Dynamics Biophysical Journal. 112: 448a. DOI: 10.1016/J.Bpj.2016.11.2403  0.403
2017 Hedger G, Yen H, Liko I, Robinson CV, Siebold C, Sansom MS. Molecular Dynamics Simulations of G-Protein Coupled Receptor Lipid Interactions Biophysical Journal. 112: 386a. DOI: 10.1016/J.Bpj.2016.11.2097  0.438
2017 Naughton FB, Kalli AC, Sansom MS. Interaction of PH Domains with Phosphatidylinositol Phosphates: Structures and Energetics by Simulation Biophysical Journal. 112: 326a. DOI: 10.1016/J.Bpj.2016.11.1766  0.331
2017 Duncan AL, Koldsø H, Reddy TJ, Hélie J, Sansom MS. Membrane Crowding and Complexity: Interplay between Protein-Lipid Interactions, Clustering and Diffusion Biophysical Journal. 112: 320a. DOI: 10.1016/J.Bpj.2016.11.1732  0.469
2016 Ni T, Kalli A, Naughton F, Yates L, Naneh O, Kozorog M, Anderluh G, Sansom M, Gilbert R. Structure and lipid binding properties of the kindlin-3 pleckstrin homology domain. The Biochemical Journal. PMID 27974389 DOI: 10.1042/Bcj20160791  0.347
2016 Hughes AV, Ciesielski F, Kalli AC, Clifton LA, Charlton TR, Sansom MS, Webster JR. On the interpretation of reflectivity data from lipid bilayers in terms of molecular-dynamics models. Acta Crystallographica. Section D, Structural Biology. 72: 1227-1240. PMID 27917824 DOI: 10.1107/S2059798316016235  0.415
2016 Trick JL, Chelvaniththilan S, Klesse G, Aryal P, Wallace EJ, Tucker SJ, Sansom MS. Functional Annotation of Ion Channel Structures by Molecular Simulation. Structure (London, England : 1993). PMID 27866853 DOI: 10.1016/J.Str.2016.10.005  0.798
2016 Hedger G, Rouse SL, Domanski J, Chavent M, Koldsø H, Sansom MS. Lipid Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes. Biochemistry. PMID 27786441 DOI: 10.1021/Acs.Biochem.6B00751  0.425
2016 Fowler PW, Hélie J, Duncan A, Chavent M, Koldsø H, Sansom MS. Membrane stiffness is modified by integral membrane proteins. Soft Matter. 12: 7792-7803. PMID 27722554 DOI: 10.1039/C6Sm01186A  0.391
2016 Fowler PW, Williamson JJ, Sansom MS, Olmsted PD. Roles of Interleaflet Coupling and Hydrophobic Mismatch in Lipid Membrane Phase-Separation Kinetics. Journal of the American Chemical Society. PMID 27574865 DOI: 10.1021/Jacs.6B04880  0.376
2016 Randolph AL, Mokrab Y, Bennett AL, Sansom MS, Ramsey IS. Proton currents constrain structural models of voltage sensor activation. Elife. 5. PMID 27572256 DOI: 10.7554/Elife.18017  0.359
2016 Koldsø H, Reddy T, Fowler PW, Duncan AL, Sansom MS. Membrane Compartmentalization Reduces the Mobility of Lipids and Proteins within a Model Plasma Membrane. The Journal of Physical Chemistry. B. PMID 27483109 DOI: 10.1021/Acs.Jpcb.6B05846  0.418
2016 Kalli AC, Rog T, Vattulainen I, Campbell ID, Sansom MS. The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations. The Journal of Membrane Biology. PMID 27465729 DOI: 10.1007/S00232-016-9908-Z  0.387
2016 Lelimousin M, Limongelli V, Sansom MS. Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations. Journal of the American Chemical Society. 138: 10611-22. PMID 27459426 DOI: 10.1021/Jacs.6B05602  0.415
2016 Buyan A, Kalli AC, Sansom MS. Multiscale Simulations Suggest a Mechanism for the Association of the Dok7 PH Domain with PIP-Containing Membranes. Plos Computational Biology. 12: e1005028. PMID 27459095 DOI: 10.1371/Journal.Pcbi.1005028  0.382
2016 Byrne EF, Sircar R, Miller PS, Hedger G, Luchetti G, Nachtergaele S, Tully MD, Mydock-McGrane L, Covey DF, Rambo RP, Sansom MS, Newstead S, Rohatgi R, Siebold C. Structural basis of Smoothened regulation by its extracellular domains. Nature. PMID 27437577 DOI: 10.1038/Nature18934  0.35
2016 Yamamoto E, Kalli AC, Yasuoka K, Sansom MS. Interactions of Pleckstrin Homology Domains with Membranes: Adding Back the Bilayer via High-Throughput Molecular Dynamics. Structure (London, England : 1993). 24: 1421-31. PMID 27427480 DOI: 10.1016/J.Str.2016.06.002  0.391
2016 Chavent M, Duncan AL, Sansom MS. Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale. Current Opinion in Structural Biology. 40: 8-16. PMID 27341016 DOI: 10.1016/j.sbi.2016.06.007  0.345
2016 Hedger G, Shorthouse D, Koldsø H, Sansom MS. Free Energy Landscape of Lipid Interactions with Regulatory Binding Sites on the Transmembrane Domain of the EGF Receptor. The Journal of Physical Chemistry. B. 120: 8154-63. PMID 27109430 DOI: 10.1021/Acs.Jpcb.6B01387  0.383
2016 Jackson VA, Mehmood S, Chavent M, Roversi P, Carrasquero M, Del Toro D, Seyit-Bremer G, Ranaivoson FM, Comoletti D, Sansom MS, Robinson CV, Klein R, Seiradake E. Super-complexes of adhesion GPCRs and neural guidance receptors. Nature Communications. 7: 11184. PMID 27091502 DOI: 10.1038/Ncomms11184  0.343
2016 Reithmeier RA, Casey JR, Kalli A, Sansom MS, Alguel Y, Iwata S. Band 3, the human red cell chloride/bicarbonate anion exchanger (AE1, SLC4A1), in a structural context. Biochimica Et Biophysica Acta. PMID 27058983 DOI: 10.1016/J.Bbamem.2016.03.030  0.374
2016 Samsudin F, Parker JL, Sansom MS, Newstead S, Fowler PW. Accurate Prediction of Ligand Affinities for a Proton-Dependent Oligopeptide Transporter. Cell Chemical Biology. 23: 299-309. PMID 27028887 DOI: 10.1016/J.Chembiol.2015.11.015  0.302
2016 Naughton FB, Kalli AC, Sansom MS. Association of Peripheral Membrane Proteins with Membranes: Free Energy of Binding of GRP1 PH Domain with Phosphatidylinositol Phosphate-Containing Model Bilayers. The Journal of Physical Chemistry Letters. 7: 1219-24. PMID 26977543 DOI: 10.1021/Acs.Jpclett.6B00153  0.429
2016 Hedger G, Sansom MS. Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations. Biochimica Et Biophysica Acta. 1858: 2390-400. PMID 26946244 DOI: 10.1016/J.Bbamem.2016.02.037  0.461
2016 Garcia-Fandiño R, Piñeiro Á, Trick JL, Sansom MS. Lipid Bilayer Membrane Perturbation by Embedded Nanopores: A Simulation Study. Acs Nano. 10: 3693-701. PMID 26943498 DOI: 10.1021/Acsnano.6B00202  0.436
2016 Niramitranon J, Sansom MS, Pongprayoon P. Why do the outer membrane proteins OmpF from E. coli and OprP from P. aeruginosa prefer trimers? Simulation studies. Journal of Molecular Graphics & Modelling. 65: 1-7. PMID 26895142 DOI: 10.1016/J.Jmgm.2016.02.002  0.477
2016 Reddy T, Sansom MS. Computational virology: From the inside out. Biochimica Et Biophysica Acta. 1858: 1610-8. PMID 26874202 DOI: 10.1016/J.Bbamem.2016.02.007  0.385
2016 Reddy T, Sansom MS. The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope. Structure (London, England : 1993). 24: 375-82. PMID 26833387 DOI: 10.1016/J.Str.2015.12.011  0.391
2016 Chavent M, Seiradake E, Jones EY, Sansom MS. Structures of the EphA2 Receptor at the Membrane: Role of Lipid Interactions. Structure (London, England : 1993). 24: 337-47. PMID 26724997 DOI: 10.1016/J.Str.2015.11.008  0.425
2016 Shorthouse D, Hedger G, Koldsø H, Sansom MS. Molecular simulations of glycolipids: Towards mammalian cell membrane models. Biochimie. 120: 105-9. PMID 26427555 DOI: 10.1016/J.Biochi.2015.09.033  0.403
2016 Pliotas C, Dahl AC, Rasmussen T, Mahendran KR, Smith TK, Marius P, Gault J, Rasmussen A, Robinson CV, Bayley H, Sansom MS, Booth IR, Naismith JH. Gating MscS: structural basis of mechanosensation and the role of lipids in ion channel regulation Acta Crystallographica Section a Foundations and Advances. 72: s35-s35. DOI: 10.1107/S2053273316099459  0.374
2016 Willems N, Lelimousin M, Sansom MS. Lipase Dynamics and Activation: The Case of M37 Biophysical Journal. 110: 176a. DOI: 10.1016/J.Bpj.2015.11.985  0.348
2016 Duncan AL, Koldsø H, Reddy T, Helie J, Sansom MS. Lipid Composition Modulates Membrane Protein Clustering Biophysical Journal. 110: 81a. DOI: 10.1016/J.Bpj.2015.11.499  0.435
2016 Naughton FB, Kalli AC, Sansom MS. Free Energies of Interaction of pH Domains with Phosphatidylinositol Phosphate Lipids Biophysical Journal. 110: 573a. DOI: 10.1016/J.Bpj.2015.11.3065  0.4
2016 Newport TD, Sansom MS, Stansfeld PJ. Memprotmd: Protein-Lipid Interactions of Phospholipid Biosynthetic Enzymes and Development of the Web Database Biophysical Journal. 110: 572a. DOI: 10.1016/J.Bpj.2015.11.3063  0.424
2016 Reddy T, Hemsley R, Edmondson E, Nowaczyk N, Pitt-Francis J, Sansom MS. VENI, VIDI, Voronoi: Attacking Viruses with Spherical Voronoi Diagrams Biophysical Journal. 110: 36a. DOI: 10.1016/J.Bpj.2015.11.263  0.359
2016 Aryal P, Jarerattanachat V, Tucker SJ, Sansom MS. Bilayer-Mediated Structural Transitions in the TREK-2 Mechanosensitive K2P Channel Biophysical Journal. 110: 348a. DOI: 10.1016/J.Bpj.2015.11.1874  0.807
2016 Rassam P, Long KR, Williams DJ, Chavent M, Duncan A, Sansom M, Kleanthous C, Baumann CG. Unraveling the Outer Membrane Translocation Mechanism of a Protein Antibiotic using Single-Molecule Microbiology and Computational Biophysics Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1352  0.367
2016 Fowler PW, Duncan A, Helie J, Chavent M, Koldsø H, Sansom MS. The Effect of Proteins and Lipids on Membrane Stiffness Biophysical Journal. 110: 243a. DOI: 10.1016/J.Bpj.2015.11.1338  0.434
2016 Kalli AC, Yamamoto E, Naughton FB, Sansom MS. Investigating the Interactions of Peripheral Membrane Proteins with Model Membranes using High throughput Molecular Dynamics Simulations Biophysical Journal. 110: 204a. DOI: 10.1016/J.Bpj.2015.11.1138  0.443
2016 Chavent MG, Duncan A, Helie J, Rassam P, Reddy T, Goose J, Kleanthous C, Sansom MS. Membrane Protein Crowding at the Mesoscale: Insights from MD Simulations Biophysical Journal. 110: 190a. DOI: 10.1016/J.Bpj.2015.11.1057  0.415
2015 Li D, Stansfeld PJ, Sansom MS, Keogh A, Vogeley L, Howe N, Lyons JA, Aragao D, Fromme P, Fromme R, Basu S, Grotjohann I, Kupitz C, Rendek K, Weierstall U, et al. Ternary structure reveals mechanism of a membrane diacylglycerol kinase. Nature Communications. 6: 10140. PMID 26673816 DOI: 10.1038/Ncomms10140  0.385
2015 Sharma S, Kim BN, Stansfeld PJ, Sansom MS, Lindau M. A Coarse Grained Model for a Lipid Membrane with Physiological Composition and Leaflet Asymmetry. Plos One. 10: e0144814. PMID 26659855 DOI: 10.1371/Journal.Pone.0144814  0.388
2015 Yamamoto E, Kalli AC, Akimoto T, Yasuoka K, Sansom MS. Anomalous Dynamics of a Lipid Recognition Protein on a Membrane Surface. Scientific Reports. 5: 18245. PMID 26657413 DOI: 10.1038/Srep18245  0.398
2015 Pliotas C, Dahl AC, Rasmussen T, Mahendran KR, Smith TK, Marius P, Gault J, Banda T, Rasmussen A, Miller S, Robinson CV, Bayley H, Sansom MS, Booth IR, Naismith JH. The role of lipids in mechanosensation. Nature Structural & Molecular Biology. PMID 26551077 DOI: 10.1038/Nsmb.3120  0.493
2015 Koldsø H, Sansom MS. Organization and Dynamics of Receptor Proteins in a Plasma Membrane. Journal of the American Chemical Society. 137: 14694-704. PMID 26517394 DOI: 10.1021/Jacs.5B08048  0.412
2015 Maingi V, Lelimousin M, Howorka S, Sansom MS. Gating-like Motions and Wall Porosity in a DNA Nanopore Scaffold Revealed by Molecular Simulations. Acs Nano. 9: 11209-17. PMID 26506011 DOI: 10.1021/Acsnano.5B06357  0.487
2015 Beale JH, Parker JL, Samsudin F, Barrett AL, Senan A, Bird LE, Scott D, Owens RJ, Sansom MS, Tucker SJ, Meredith D, Fowler PW, Newstead S. Crystal Structures of the Extracellular Domain from PepT1 and PepT2 Provide Novel Insights into Mammalian Peptide Transport. Structure (London, England : 1993). 23: 1889-99. PMID 26320580 DOI: 10.1016/J.Str.2015.07.016  0.551
2015 Hanson SM, Sansom MS, Becker EB. Modeling Suggests TRPC3 Hydrogen Bonding and Not Phosphorylation Contributes to the Ataxia Phenotype of the Moonwalker Mouse. Biochemistry. 54: 4033-41. PMID 26112884 DOI: 10.1021/Acs.Biochem.5B00235  0.419
2015 Jefferys E, Sands ZA, Shi J, Sansom MS, Fowler PW. Alchembed: A Computational Method for Incorporating Multiple Proteins into Complex Lipid Geometries. Journal of Chemical Theory and Computation. 11: 2743-2754. PMID 26089745 DOI: 10.1021/Ct501111D  0.375
2015 Stansfeld PJ, Goose JE, Caffrey M, Carpenter EP, Parker JL, Newstead S, Sansom MS. MemProtMD: Automated Insertion of Membrane Protein Structures into Explicit Lipid Membranes. Structure (London, England : 1993). 23: 1350-61. PMID 26073602 DOI: 10.1016/J.Str.2015.05.006  0.435
2015 Rassam P, Copeland NA, Birkholz O, Tóth C, Chavent M, Duncan AL, Cross SJ, Housden NG, Kaminska R, Seger U, Quinn DM, Garrod TJ, Sansom MS, Piehler J, Baumann CG, et al. Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria. Nature. 523: 333-6. PMID 26061769 DOI: 10.1038/Nature14461  0.371
2015 Trick JL, Aryal P, Tucker SJ, Sansom MS. Molecular simulation studies of hydrophobic gating in nanopores and ion channels. Biochemical Society Transactions. 43: 146-50. PMID 25849908 DOI: 10.1042/Bst20140256  0.807
2015 Hanson SM, Newstead S, Swartz KJ, Sansom MS. Capsaicin interaction with TRPV1 channels in a lipid bilayer: molecular dynamics simulation. Biophysical Journal. 108: 1425-34. PMID 25809255 DOI: 10.1016/J.Bpj.2015.02.013  0.488
2015 Hedger G, Sansom MS, Koldsø H. The juxtamembrane regions of human receptor tyrosine kinases exhibit conserved interaction sites with anionic lipids. Scientific Reports. 5: 9198. PMID 25779975 DOI: 10.1038/Srep09198  0.393
2015 Dong YY, Pike AC, Mackenzie A, McClenaghan C, Aryal P, Dong L, Quigley A, Grieben M, Goubin S, Mukhopadhyay S, Ruda GF, Clausen MV, Cao L, Brennan PE, Burgess-Brown NA, ... Sansom MS, et al. K2P channel gating mechanisms revealed by structures of TREK-2 and a complex with Prozac. Science (New York, N.Y.). 347: 1256-9. PMID 25766236 DOI: 10.1126/Science.1261512  0.785
2015 Kalli AC, Sansom MS, Reithmeier RA. Molecular dynamics simulations of the bacterial UraA H+-uracil symporter in lipid bilayers reveal a closed state and a selective interaction with cardiolipin. Plos Computational Biology. 11: e1004123. PMID 25729859 DOI: 10.1371/Journal.Pcbi.1004123  0.482
2015 Reddy T, Shorthouse D, Parton DL, Jefferys E, Fowler PW, Chavent M, Baaden M, Sansom MS. Nothing to sneeze at: a dynamic and integrative computational model of an influenza A virion. Structure (London, England : 1993). 23: 584-97. PMID 25703376 DOI: 10.1016/J.Str.2014.12.019  0.407
2015 Laurent B, Chavent M, Cragnolini T, Dahl AC, Pasquali S, Derreumaux P, Sansom MS, Baaden M. Epock: rapid analysis of protein pocket dynamics. Bioinformatics (Oxford, England). 31: 1478-80. PMID 25505095 DOI: 10.1093/Bioinformatics/Btu822  0.318
2015 Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. Influence of lipids on the hydrophobic barrier within the pore of the TWIK-1 K2P channel. Channels (Austin, Tex.). 9: 44-9. PMID 25487004 DOI: 10.4161/19336950.2014.981987  0.792
2015 Rouse SL, Sansom MS. Interactions of lipids and detergents with a viral ion channel protein: molecular dynamics simulation studies. The Journal of Physical Chemistry. B. 119: 764-72. PMID 25286030 DOI: 10.1021/Jp505127Y  0.486
2015 Abd Halim KB, Koldsø H, Sansom MS. Interactions of the EGFR juxtamembrane domain with PIP2-containing lipid bilayers: Insights from multiscale molecular dynamics simulations. Biochimica Et Biophysica Acta. 1850: 1017-25. PMID 25219456 DOI: 10.1016/J.Bbagen.2014.09.006  0.362
2015 Aryal P, Sansom MS, Tucker SJ. Hydrophobic gating in ion channels. Journal of Molecular Biology. 427: 121-30. PMID 25106689 DOI: 10.1016/J.Jmb.2014.07.030  0.786
2015 Song C, Köpfer DA, Gruene T, Sheldrick GM, Sansom MS, Zachariae U, de Groot BL. Direct Contacts of K+ Ions in the Selectivity Filter Enable the High Conductance of K+ Channels Biophysical Journal. 108: 129a. DOI: 10.1016/J.Bpj.2014.11.721  0.418
2015 Duncan AL, Koldsø H, Sansom MS. Clustering of Inward Rectifier Potassium Channels in a PIP2-Containing Membrane: A Molecular Dynamics Simulation Study Biophysical Journal. 108: 129a. DOI: 10.1016/J.Bpj.2014.11.720  0.473
2015 Domanski J, Sansom M, Stansfeld P, Best R. Studying Membrane Protein Folding by Molecular Dynamics Simulations Biophysical Journal. 108: 92a. DOI: 10.1016/J.Bpj.2014.11.534  0.473
2015 Koldsø H, Sansom MS. ‘In vivo in Silico’: Effects of Membrane Complexity on Protein-Lipid Interactions, Lipid Nano-Domains and Curvature Biophysical Journal. 108: 80a. DOI: 10.1016/J.Bpj.2014.11.469  0.418
2015 Aryal P, Tucker SJ, Sansom MS. Understanding the Dynamics of K2P Channels in Complex Lipid Bilayers Biophysical Journal. 108: 436a-437a. DOI: 10.1016/J.Bpj.2014.11.2384  0.797
2015 Buyan A, Kalli AC, Sansom MS. Interactions of Dok7 with Model Membranes Containing Anionic Lipids and Phosophoinositides Biophysical Journal. 108: 381a. DOI: 10.1016/J.Bpj.2014.11.2090  0.42
2015 Reddy T, Shorthouse D, Parton D, Jefferys E, Fowler PW, Chavent M, Baaden M, Sansom MS. Nothing to Sneeze at: A Full-Scale Computational Model of the Human Influenza Virion Biophysical Journal. 108: 31a. DOI: 10.1016/J.Bpj.2014.11.195  0.361
2015 Hedger G, Sansom MS, Koldsø H. Local Bilayer Reorganisation by the JM Regions of All Human RTKs: A Multiscale Molecular Dynamics Study Biophysical Journal. 108: 257a-258a. DOI: 10.1016/J.Bpj.2014.11.1425  0.37
2015 Yamamoto E, Kalli AC, Akimoto T, Yasuoka K, Sansom MS. Anomalous Dynamics of Pleckstrin Homology Domains on Lipid Membrane Surfaces Biophysical Journal. 108: 249a. DOI: 10.1016/J.Bpj.2014.11.1376  0.404
2015 Fowler PW, Koldsø H, Duncan A, Sansom MS. Investigating the Role of Bilayer Size and Composition on Membrane Fluctuations using Large Coarse-Grained Simulations Biophysical Journal. 108: 240a. DOI: 10.1016/J.Bpj.2014.11.1326  0.401
2015 Trick JL, Song C, Wallace JE, Bayley H, Sansom MS. Electro-Wetting of a Hydrophobic Gate in a Biomimetic Nanopore Biophysical Journal. 108: 186a. DOI: 10.1016/J.Bpj.2014.11.1027  0.338
2014 Hall BA, Halim KB, Buyan A, Emmanouil B, Sansom MS. Sidekick for Membrane Simulations: Automated Ensemble Molecular Dynamics Simulations of Transmembrane Helices. Journal of Chemical Theory and Computation. 10: 2165-75. PMID 26580541 DOI: 10.1021/Ct500003G  0.449
2014 Fowler PW, Bollepalli MK, Rapedius M, Nematian-Ardestani E, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. Insights into the structural nature of the transition state in the Kir channel gating pathway. Channels (Austin, Tex.). 8: 551-5. PMID 25483285 DOI: 10.4161/19336950.2014.962371  0.579
2014 Lee C, Yashiro S, Dotson DL, Uzdavinys P, Iwata S, Sansom MS, von Ballmoos C, Beckstein O, Drew D, Cameron AD. Crystal structure of the sodium-proton antiporter NhaA dimer and new mechanistic insights. The Journal of General Physiology. 144: 529-44. PMID 25422503 DOI: 10.1085/Jgp.201411219  0.717
2014 Chavent M, Reddy T, Goose J, Dahl AC, Stone JE, Jobard B, Sansom MS. Methodologies for the analysis of instantaneous lipid diffusion in MD simulations of large membrane systems. Faraday Discussions. 169: 455-75. PMID 25341001 DOI: 10.1039/C3Fd00145H  0.412
2014 Koldsø H, Shorthouse D, Hélie J, Sansom MS. Lipid clustering correlates with membrane curvature as revealed by molecular simulations of complex lipid bilayers. Plos Computational Biology. 10: e1003911. PMID 25340788 DOI: 10.1371/Journal.Pcbi.1003911  0.41
2014 Jefferys E, Sansom MS, Fowler PW. NRas slows the rate at which a model lipid bilayer phase separates. Faraday Discussions. 169: 209-23. PMID 25340566 DOI: 10.1039/C3Fd00131H  0.381
2014 Trick JL, Wallace EJ, Bayley H, Sansom MS. Designing a hydrophobic barrier within biomimetic nanopores. Acs Nano. 8: 11268-79. PMID 25317664 DOI: 10.1021/Nn503930P  0.464
2014 Chavent M, Chetwynd AP, Stansfeld PJ, Sansom MS. Dimerization of the EphA1 receptor tyrosine kinase transmembrane domain: Insights into the mechanism of receptor activation. Biochemistry. 53: 6641-52. PMID 25286141 DOI: 10.1021/Bi500800X  0.408
2014 Tan J, Rouse SL, Li D, Pye VE, Vogeley L, Brinth AR, El Arnaout T, Whitney JC, Howell PL, Sansom MS, Caffrey M. A conformational landscape for alginate secretion across the outer membrane of Pseudomonas aeruginosa. Acta Crystallographica. Section D, Biological Crystallography. 70: 2054-68. PMID 25084326 DOI: 10.1016/J.Bpj.2013.11.4041  0.455
2014 Lonsdale R, Rouse SL, Sansom MS, Mulholland AJ. A multiscale approach to modelling drug metabolism by membrane-bound cytochrome P450 enzymes. Plos Computational Biology. 10: e1003714. PMID 25033460 DOI: 10.1371/Journal.Pcbi.1003714  0.382
2014 Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. A hydrophobic barrier deep within the inner pore of the TWIK-1 K2P potassium channel. Nature Communications. 5: 4377. PMID 25001086 DOI: 10.1038/Ncomms5377  0.804
2014 Bollepalli MK, Fowler PW, Rapedius M, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. State-dependent network connectivity determines gating in a K+ channel. Structure (London, England : 1993). 22: 1037-46. PMID 24980796 DOI: 10.1016/J.Str.2014.04.018  0.657
2014 Simmons KJ, Jackson SM, Brueckner F, Patching SG, Beckstein O, Ivanova E, Geng T, Weyand S, Drew D, Lanigan J, Sharples DJ, Sansom MS, Iwata S, Fishwick CW, Johnson AP, et al. Molecular mechanism of ligand recognition by membrane transport protein, Mhp1. The Embo Journal. 33: 1831-44. PMID 24952894 DOI: 10.15252/Embj.201387557  0.708
2014 Stelzl LS, Fowler PW, Sansom MS, Beckstein O. Flexible gates generate occluded intermediates in the transport cycle of LacY. Journal of Molecular Biology. 426: 735-51. PMID 24513108 DOI: 10.1016/J.Jmb.2013.10.024  0.73
2014 Dunton TA, Goose JE, Gavaghan DJ, Sansom MS, Osborne JM. The free energy landscape of dimerization of a membrane protein, NanC. Plos Computational Biology. 10: e1003417. PMID 24415929 DOI: 10.1371/Journal.Pcbi.1003417  0.394
2014 Zubcevic L, Bavro VN, Muniz JR, Schmidt MR, Wang S, De Zorzi R, Venien-Bryan C, Sansom MS, Nichols CG, Tucker SJ. Control of KirBac3.1 potassium channel gating at the interface between cytoplasmic domains. The Journal of Biological Chemistry. 289: 143-51. PMID 24257749 DOI: 10.1074/Jbc.M113.501833  0.656
2014 Roussel G, Rouse SL, Sansom MS, Michaux C, Perpète EA. The role of 2-methyl-2, 4-pentanediol in sodium dodecyl sulfate micelle dissociation unveiled by dynamic light scattering and molecular dynamics simulations. Colloids and Surfaces. B, Biointerfaces. 114: 357-62. PMID 24252232 DOI: 10.1016/J.Colsurfb.2013.10.023  0.358
2014 Autzen HE, Stansfeld PJ, Sitsel OE, Wang K, Meloni G, Gourdon P, Sansom MS, Nissen P. Dynamics of Transition Metal Transporting P-Type ATPases in Native Membranes Biophysical Journal. 106: 100a. DOI: 10.1016/J.Bpj.2013.11.622  0.366
2014 Shorthouse D, Zurdo J, Sansom M. Aggregation of Therapeutic Antibodies: A Multiscale Molecular Dynamics Approach Biophysical Journal. 106: 58a-59a. DOI: 10.1016/J.Bpj.2013.11.402  0.336
2014 Hatzakis NS, Larsen J, Jensen MB, Bhatia VK, Pedersen SL, Koldsoe H, Fowler P, Uline MJ, Szleifer IG, Bjornholm T, Sansom M, Jensen KJ, Stamou D. How Membrane Curvature Drives the Up-Concentration of N-Ras Proteins to Ordered Lipid Domains : Correlation of In Vivo and In Vitro Experiments with Mean Field Theory Calculations and Coarse Grain Simulations Biophysical Journal. 106: 713a. DOI: 10.1016/J.Bpj.2013.11.3946  0.364
2014 Fowler PW, Sansom MS. Dissecting the Roles of Membrane Curvature, Lipid Raft Formation and Protein-Lipid Interactions in the Clustering of Ras Biophysical Journal. 106: 703a. DOI: 10.1016/J.Bpj.2013.11.3891  0.389
2014 Stansfeld PJ, Sansom MS. MemProtMD: Membrane Protein Structures and Simulations Biophysical Journal. 106: 634a. DOI: 10.1016/J.Bpj.2013.11.3509  0.442
2014 Kalli AC, Campbell ID, Sansom MS. Interactions of the Kindlin Family Pleckstrin Homology Domains with Model Membranes Containing Zwitterionic Lipids and Phosphatidyl Inositol Phosphates Biophysical Journal. 106: 517a. DOI: 10.1016/J.Bpj.2013.11.2889  0.39
2014 Helie J, Lelimousin M, Deane CM, Milletti F, Sansom MS. In Silico Studies of Asymmetric Membranes Perturbations Caused by Dynamic Aggregation of a Cell-Penetrating Peptide Biophysical Journal. 106: 452a. DOI: 10.1016/J.Bpj.2013.11.2563  0.396
2014 Chavent MG, Seiradake E, Jones EY, Sansom MS. Association of Epha2 Receptor with the Membrane through its Second Fibronectin Domain: A Biophysical and Computational Study Biophysical Journal. 106: 307a-308a. DOI: 10.1016/J.Bpj.2013.11.1782  0.383
2014 Buyan A, Abd Halim K, Sansom MS. Dimerization of Transmembrane Helices of Receptor Tyrosine Kinases: Assessing the Convergence of Coarse-Grained Molecular Dynamics Simulations Biophysical Journal. 106: 307a. DOI: 10.1016/J.Bpj.2013.11.1781  0.406
2014 Lelimousin MG, Limongelli V, Sansom MS. Highly Enhanced Conformational Sampling of the Transmembrane Domain of Egf Receptor Sheds Light on the Activation Mechanism Biophysical Journal. 106: 307a. DOI: 10.1016/J.Bpj.2013.11.1780  0.376
2014 Song C, de Groot BL, Sansom MS. Membrane-Dependent Activity of the Dermcidin Channel Biophysical Journal. 106: 297a. DOI: 10.1016/J.Bpj.2013.11.1728  0.54
2014 Koldsø H, Sansom MS. Curvature and Lipid Clustering within Asymmetric Biologically Relevant Membrane Models Biophysical Journal. 106: 291a. DOI: 10.1016/J.Bpj.2013.11.1699  0.428
2014 Trick JL, Wallace EJ, Bayley H, Sansom MS. Designing Hydrophobic Gates into Biomimetic Nanopores Biophysical Journal. 106: 211a. DOI: 10.1016/J.Bpj.2013.11.1240  0.451
2013 Fowler PW, Abad E, Beckstein O, Sansom MS. Energetics of Multi-Ion Conduction Pathways in Potassium Ion Channels. Journal of Chemical Theory and Computation. 9: 5176-5189. PMID 24353479 DOI: 10.1021/Ct4005933  0.74
2013 Fowler PW, Beckstein O, Abad E, Sansom MS. Detailed Examination of a Single Conduction Event in a Potassium Channel. The Journal of Physical Chemistry Letters. 4: 3104-3109. PMID 24143269 DOI: 10.1021/Jz4014079  0.722
2013 Rouse SL, Marcoux J, Robinson CV, Sansom MS. Dodecyl maltoside protects membrane proteins in vacuo. Biophysical Journal. 105: 648-56. PMID 23931313 DOI: 10.1016/J.Bpj.2013.06.025  0.375
2013 Marzian S, Stansfeld PJ, Rapedius M, Rinné S, Nematian-Ardestani E, Abbruzzese JL, Steinmeyer K, Sansom MS, Sanguinetti MC, Baukrowitz T, Decher N. Side pockets provide the basis for a new mechanism of Kv channel-specific inhibition. Nature Chemical Biology. 9: 507-13. PMID 23728494 DOI: 10.1038/Nchembio.1271  0.445
2013 Shintre CA, Pike AC, Li Q, Kim JI, Barr AJ, Goubin S, Shrestha L, Yang J, Berridge G, Ross J, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, Marsden BD, et al. Structures of ABCB10, a human ATP-binding cassette transporter in apo- and nucleotide-bound states. Proceedings of the National Academy of Sciences of the United States of America. 110: 9710-5. PMID 23716676 DOI: 10.1073/Pnas.1217042110  0.34
2013 Fowler PW, Sansom MS. The pore of voltage-gated potassium ion channels is strained when closed. Nature Communications. 4: 1872. PMID 23695666 DOI: 10.1038/Ncomms2858  0.501
2013 Stansfeld PJ, Jefferys EE, Sansom MS. Multiscale simulations reveal conserved patterns of lipid interactions with aquaporins. Structure (London, England : 1993). 21: 810-9. PMID 23602661 DOI: 10.1016/J.Str.2013.03.005  0.422
2013 Parton DL, Tek A, Baaden M, Sansom MS. Formation of raft-like assemblies within clusters of influenza hemagglutinin observed by MD simulations. Plos Computational Biology. 9: e1003034. PMID 23592976 DOI: 10.1371/Journal.Pcbi.1003034  0.39
2013 Goose JE, Sansom MS. Reduced lateral mobility of lipids and proteins in crowded membranes. Plos Computational Biology. 9: e1003033. PMID 23592975 DOI: 10.1371/Journal.Pcbi.1003033  0.361
2013 Quigley A, Dong YY, Pike AC, Dong L, Shrestha L, Berridge G, Stansfeld PJ, Sansom MS, Edwards AM, Bountra C, von Delft F, Bullock AN, Burgess-Brown NA, Carpenter EP. The structural basis of ZMPSTE24-dependent laminopathies. Science (New York, N.Y.). 339: 1604-7. PMID 23539603 DOI: 10.1126/Science.1231513  0.352
2013 Rodriguez F, Rouse SL, Tait CE, Harmer J, De Riso A, Timmel CR, Sansom MS, Berks BC, Schnell JR. Structural model for the protein-translocating element of the twin-arginine transport system. Proceedings of the National Academy of Sciences of the United States of America. 110: E1092-101. PMID 23471988 DOI: 10.1073/Pnas.1219486110  0.414
2013 Lumb CN, Sansom MS. Defining the membrane-associated state of the PTEN tumor suppressor protein. Biophysical Journal. 104: 613-21. PMID 23442912 DOI: 10.1016/J.Bpj.2012.12.002  0.415
2013 Lelimousin M, Sansom MS. Membrane perturbation by carbon nanotube insertion: pathways to internalization. Small (Weinheim An Der Bergstrasse, Germany). 9: 3639-46. PMID 23418066 DOI: 10.1002/Smll.201202640  0.376
2013 Schmidt MR, Stansfeld PJ, Tucker SJ, Sansom MS. Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel. Biochemistry. 52: 279-81. PMID 23270460 DOI: 10.1021/Bi301350S  0.677
2013 Fotinou C, Aittoniemi J, de Wet H, Polidori A, Pucci B, Sansom MS, Vénien-Bryan C, Ashcroft FM. Tetrameric structure of SUR2B revealed by electron microscopy of oriented single particles. The Febs Journal. 280: 1051-63. PMID 23253866 DOI: 10.1111/Febs.12097  0.392
2013 Holdbrook DA, Piggot TJ, Sansom MS, Khalid S. Stability and membrane interactions of an autotransport protein: MD simulations of the Hia translocator domain in a complex membrane environment. Biochimica Et Biophysica Acta. 1828: 715-23. PMID 22982599 DOI: 10.1016/J.Bbamem.2012.09.002  0.376
2013 Schmidt MR, Aryal P, Tucker SJ, Sansom MS. K2P and Kir K+ Channels in Physiological Bilayers Biophysical Journal. 104: 132a. DOI: 10.1016/J.Bpj.2012.11.754  0.808
2013 Chavent MG, Chetwynd A, Stansfeld PJ, Sansom MS. Deciphering Metastable EphA1 Transmembrane Helices Association using PMF Calculations and Multiscale Molecular Dynamics Simulations Biophysical Journal. 104: 117a. DOI: 10.1016/J.Bpj.2012.11.677  0.39
2013 Halim KBA, Sansom MS. Molecular Dynamics Simulations of Transmembrane and Juxtamembrane Domain of EGFR and its Interaction with Membrane Biophysical Journal. 104: 117a. DOI: 10.1016/J.Bpj.2012.11.676  0.405
2013 Buyan A, Halim KA, Schnell J, Sansom MS. Muscle-Specific Kinase Transmembrane Helices: Stability and Interactions in Detergent Micelles vs. Lipid Bilayers Biophysical Journal. 104: 609a. DOI: 10.1016/J.Bpj.2012.11.3375  0.393
2013 Koldsø H, Sansom MS. Signal Transduction by a Cytokine Receptor: Multi-Scale Computational Studies of the Membrane Associated Gp130 Receptor Complex Biophysical Journal. 104: 608a. DOI: 10.1016/J.Bpj.2012.11.3372  0.377
2013 Helie J, Milletti F, Lelimousin M, Deane CM, Sansom MS. Interactions of Two Amphipathic Cell-Penetrating Peptides with Complex Model Membranes: Insights from Molecular Dynamics Simulations Biophysical Journal. 104: 600a. DOI: 10.1016/J.Bpj.2012.11.3332  0.403
2013 Trick JL, Wallace EJ, Bayley H, Sansom MS. Simulations and Modelling of Biomimetic Nanopores Biophysical Journal. 104: 527a. DOI: 10.1016/J.Bpj.2012.11.2916  0.427
2013 Hanson SM, Swartz KJ, Newstead S, Sansom MS. Molecular Dynamics Studies of Lipophilic Small Molecule TRPV1 Ligands in Lipid Bilayers Biophysical Journal. 104: 456a. DOI: 10.1016/J.Bpj.2012.11.2523  0.521
2013 Kalli AC, Rog T, Vattulainen I, Sansom MS. Computational Studies of the Integrin Receptor in Complex Biologically Relevant Lipid Bilayers Biophysical Journal. 104: 432a. DOI: 10.1016/J.Bpj.2012.11.2403  0.39
2013 Kalli AC, Campbell ID, Sansom MS. Computational Studies of Talin-Mediated Integrin Activation Biophysical Journal. 104: 430a-431a. DOI: 10.1016/J.Bpj.2012.11.2396  0.343
2013 Goose JE, Chavent M, Sansom MS. How Instantaneous Lipid Flows Influence Membrane Protein Diffusion Biophysical Journal. 104: 426a. DOI: 10.1016/J.Bpj.2012.11.2372  0.397
2013 Reddy T, Parton DL, Baaden M, Sansom MS. Protein-Lipid Interactions in a Full-Scale Influenza a Virion: Insight into Flu Seasonality Biophysical Journal. 104: 412a. DOI: 10.1016/J.Bpj.2012.11.2300  0.368
2013 Rouse S, Sansom MS. From the Micelle to the Membrane: Molecular Dynamics Simulations of Solution NMR Structures of Membrane Proteins Biophysical Journal. 104: 408a. DOI: 10.1016/J.Bpj.2012.11.2275  0.477
2013 Stansfeld PJ, Koldsø H, Jefferys EE, Goose JE, Sansom MS. Memprotmd: Restoring Membrane Protein Structures to their Bilayer Environments Biophysical Journal. 104: 384a. DOI: 10.1016/J.Bpj.2012.11.2141  0.435
2013 Tek A, Darré L, Bond PJ, Sansom MS, Pantano S, Baaden M. A Zoom on Membrane Fusion through Coarse-Grained, Atomistic and Hybrid Molecular Dynamics of SNARE Proteins Biophysical Journal. 104: 32a. DOI: 10.1016/J.Bpj.2012.11.214  0.426
2013 Lelimousin M, Limongelli V, Sansom MS. Transmembrane Helix Association of ErbB Receptors Investigated by Coarse-Grained Metadynamics Simulations Biophysical Journal. 104: 32a. DOI: 10.1016/J.Bpj.2012.11.213  0.369
2013 Beckstein O, Drew D, Lee C, Yashiro S, Sansom M, Iwata S, Cameron AD. A Sodium-Sensitive Salt Bridge in the Na+/H+ Antiporter NhaA Biophysical Journal. 104: 200a. DOI: 10.1016/J.Bpj.2012.11.1128  0.442
2012 Koldsø H, Sansom MS. Local Lipid Reorganization by a Transmembrane Protein Domain. The Journal of Physical Chemistry Letters. 3: 3498-502. PMID 26290979 DOI: 10.1021/Jz301570W  0.421
2012 Rollauer SE, Tarry MJ, Graham JE, Jääskeläinen M, Jäger F, Johnson S, Krehenbrink M, Liu SM, Lukey MJ, Marcoux J, McDowell MA, Rodriguez F, Roversi P, Stansfeld PJ, Robinson CV, ... Sansom MS, et al. Structure of the TatC core of the twin-arginine protein transport system. Nature. 492: 210-4. PMID 23201679 DOI: 10.1038/Nature11683  0.387
2012 Yates LA, Lumb CN, Brahme NN, Zalyte R, Bird LE, De Colibus L, Owens RJ, Calderwood DA, Sansom MS, Gilbert RJ. Structural and functional characterization of the kindlin-1 pleckstrin homology domain. The Journal of Biological Chemistry. 287: 43246-61. PMID 23132860 DOI: 10.1074/Jbc.M112.422089  0.342
2012 Lindau M, Hall BA, Chetwynd A, Beckstein O, Sansom MS. Coarse-grain simulations reveal movement of the synaptobrevin C-terminus in response to piconewton forces. Biophysical Journal. 103: 959-69. PMID 23009845 DOI: 10.1016/J.Bpj.2012.08.007  0.712
2012 Rapedius M, Schmidt MR, Sharma C, Stansfeld PJ, Sansom MS, Baukrowitz T, Tucker SJ. State-independent intracellular access of quaternary ammonium blockers to the pore of TREK-1. Channels (Austin, Tex.). 6: 473-8. PMID 22991046 DOI: 10.4161/Chan.22153  0.633
2012 Norimatsu Y, Ivetac A, Alexander C, O'Donnell N, Frye L, Sansom MS, Dawson DC. Locating a plausible binding site for an open-channel blocker, GlyH-101, in the pore of the cystic fibrosis transmembrane conductance regulator. Molecular Pharmacology. 82: 1042-55. PMID 22923500 DOI: 10.1124/Mol.112.080267  0.454
2012 Lumb CN, Sansom MS. Finding a needle in a haystack: the role of electrostatics in target lipid recognition by PH domains. Plos Computational Biology. 8: e1002617. PMID 22844242 DOI: 10.1371/Journal.Pcbi.1002617  0.406
2012 de Wet H, Shimomura K, Aittoniemi J, Ahmad N, Lafond M, Sansom MS, Ashcroft FM. A universally conserved residue in the SUR1 subunit of the KATP channel is essential for translating nucleotide binding at SUR1 into channel opening. The Journal of Physiology. 590: 5025-36. PMID 22802590 DOI: 10.1113/Jphysiol.2012.236075  0.46
2012 Dahl AC, Chavent M, Sansom MS. Bendix: intuitive helix geometry analysis and abstraction. Bioinformatics (Oxford, England). 28: 2193-4. PMID 22730430 DOI: 10.1093/Bioinformatics/Bts357  0.319
2012 García-Fandiño R, Sansom MS. Designing biomimetic pores based on carbon nanotubes. Proceedings of the National Academy of Sciences of the United States of America. 109: 6939-44. PMID 22509000 DOI: 10.1073/Pnas.1119326109  0.406
2012 Webster R, Maxwell S, Spearman H, Tai K, Beckstein O, Sansom M, Beeson D. A novel congenital myasthenic syndrome due to decreased acetylcholine receptor ion-channel conductance. Brain : a Journal of Neurology. 135: 1070-80. PMID 22382357 DOI: 10.1093/Brain/Aws016  0.72
2012 Parton DL, Akhmatskaya EV, Sansom MS. Multiscale simulations of the antimicrobial peptide maculatin 1.1: water permeation through disordered aggregates. The Journal of Physical Chemistry. B. 116: 8485-93. PMID 22380536 DOI: 10.1021/Jp212358Y  0.394
2012 Andres-Enguix I, Shang L, Stansfeld PJ, Morahan JM, Sansom MS, Lafrenière RG, Roy B, Griffiths LR, Rouleau GA, Ebers GC, Cader ZM, Tucker SJ. Functional analysis of missense variants in the TRESK (KCNK18) K channel. Scientific Reports. 2: 237. PMID 22355750 DOI: 10.1038/Srep00237  0.6
2012 Bavro VN, De Zorzi R, Schmidt MR, Muniz JR, Zubcevic L, Sansom MS, Vénien-Bryan C, Tucker SJ. Structure of a KirBac potassium channel with an open bundle crossing indicates a mechanism of channel gating. Nature Structural & Molecular Biology. 19: 158-63. PMID 22231399 DOI: 10.1038/Nsmb.2208  0.66
2012 Rapedius M, Piechotta PL, Stansfeld PJ, Bollepalli MK, Ehrlich G, Andres-Enguix I, Fritzenschaft H, Decher N, Sansom MS, Tucker SJ, Baukrowitz T. Structural and Mechanistic Insights into Gating of K2P Channels Biophysical Journal. 102: 121a. DOI: 10.1016/J.Bpj.2011.11.678  0.678
2012 Dahl ACE, Chavent M, Sansom MS. Analysing Helix Flexibility in Membrane Proteins using Bendix Biophysical Journal. 102: 53a. DOI: 10.1016/J.Bpj.2011.11.319  0.52
2012 Bavro VN, De Zorzi R, Schmidt MR, Muniz JR, Zubcevic L, Sansom MS, Venien-Bryan C, Tucker SJ. Crystal Structure of a Prokaryotic Kir Channel in an Open Conformation Biophysical Journal. 102: 536a. DOI: 10.1016/J.Bpj.2011.11.2928  0.652
2012 Tek A, Bond PJ, Sansom MS, Baaden M. Insights into Membrane Fusion from Molecular Dynamics Simulations of SNARE Proteins Biophysical Journal. 102: 499a. DOI: 10.1016/J.Bpj.2011.11.2734  0.427
2012 Stansfeld PJ, Sansom MS. Memprotmd: Adding the Grease to Membrane Protein Structures Biophysical Journal. 102: 469a. DOI: 10.1016/J.Bpj.2011.11.2574  0.429
2012 Chohan P, Khalid S, Sansom M. Simulation Studies of Transport of Hydrophobic Compounds through Outer Membrane Proteins of Gram Negative Bacteria Biophysical Journal. 102: 430a-431a. DOI: 10.1016/J.Bpj.2011.11.2358  0.444
2012 Goose J, Holdbrook DA, Khalid S, Sansom M. The Role of Instantaneous Lipid “Flows” Within the E. coli Outer Membrane Biophysical Journal. 102: 299a. DOI: 10.1016/J.Bpj.2011.11.1653  0.402
2012 Rouse S, Sansom MS. MD For MS: Simulations of the Transfer of Membrane Protein-Detergent Complexes from Solution to Vacuum in Electrospray Ionisation Mass Spectrometry (ESI-MS) Biophysical Journal. 102: 232a. DOI: 10.1016/J.Bpj.2011.11.1273  0.378
2012 Lumb CN, Sansom MS. Molecular Simulations of the Membrane-Associated State of the PTEN Tumour-Suppressor Protein Biophysical Journal. 102: 19a. DOI: 10.1016/J.Bpj.2011.11.125  0.41
2012 Kalli A, Lumb CN, Morgan G, Parton DL, Stansfeld PJ, Sansom MS. Multiscale Simulations of Signalling at Membranes Biophysical Journal. 102: 7a. DOI: 10.1016/J.Bpj.2011.11.056  0.428
2011 Lumb CN, He J, Xue Y, Stansfeld PJ, Stahelin RV, Kutateladze TG, Sansom MS. Biophysical and computational studies of membrane penetration by the GRP1 pleckstrin homology domain. Structure (London, England : 1993). 19: 1338-46. PMID 21893292 DOI: 10.1016/J.Str.2011.04.010  0.429
2011 Cojocaru V, Balali-Mood K, Sansom MS, Wade RC. Structure and dynamics of the membrane-bound cytochrome P450 2C9. Plos Computational Biology. 7: e1002152. PMID 21852944 DOI: 10.1371/Journal.Pcbi.1002152  0.437
2011 Piechotta PL, Rapedius M, Stansfeld PJ, Bollepalli MK, Ehrlich G, Erhlich G, Andres-Enguix I, Fritzenschaft H, Decher N, Sansom MS, Tucker SJ, Baukrowitz T. The pore structure and gating mechanism of K2P channels. The Embo Journal. 30: 3607-19. PMID 21822218 DOI: 10.1038/Emboj.2011.268  0.675
2011 Parton DL, Klingelhoefer JW, Sansom MS. Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class. Biophysical Journal. 101: 691-9. PMID 21806937 DOI: 10.1016/J.Bpj.2011.06.048  0.402
2011 Männikkö R, Stansfeld PJ, Ashcroft AS, Hattersley AT, Sansom MS, Ellard S, Ashcroft FM. A conserved tryptophan at the membrane-water interface acts as a gatekeeper for Kir6.2/SUR1 channels and causes neonatal diabetes when mutated. The Journal of Physiology. 589: 3071-83. PMID 21540348 DOI: 10.1113/Jphysiol.2011.209700  0.448
2011 Mokrab Y, Sansom MS. Interaction of diverse voltage sensor homologs with lipid bilayers revealed by self-assembly simulations. Biophysical Journal. 100: 875-84. PMID 21320431 DOI: 10.1016/J.Bpj.2010.11.049  0.473
2011 Weyand S, Shimamura T, Beckstein O, Sansom MS, Iwata S, Henderson PJ, Cameron AD. The alternating access mechanism of transport as observed in the sodium-hydantoin transporter Mhp1. Journal of Synchrotron Radiation. 18: 20-3. PMID 21169684 DOI: 10.1107/S0909049510032449  0.703
2011 Newstead S, Drew D, Cameron AD, Postis VL, Xia X, Fowler PW, Ingram JC, Carpenter EP, Sansom MS, McPherson MJ, Baldwin SA, Iwata S. Crystal structure of a prokaryotic homologue of the mammalian oligopeptide-proton symporters, PepT1 and PepT2. The Embo Journal. 30: 417-26. PMID 21131908 DOI: 10.1038/Emboj.2010.309  0.344
2011 Kalli A, Campbell ID, Sansom MS. Elucidation of the Integrin Inside-Out Activation Mechanism Biophysical Journal. 100: 89a. DOI: 10.1016/J.Bpj.2010.12.690  0.352
2011 Lumb CN, Stansfeld PJ, Sansom MS. Assessing the Extent of Membrane Penetration by the Pleckstrin Homology Domain of GRP1: Insights from Molecular Dynamics Simulations Biophysical Journal. 100: 88a-89a. DOI: 10.1016/J.Bpj.2010.12.688  0.416
2011 Goose J, Sansom MS. Outer Membrane Protein Dynamics in E.coli Biophysical Journal. 100: 631a. DOI: 10.1016/J.Bpj.2010.12.3627  0.413
2011 Schmidt MR, Stansfeld PJ, Rapedius M, Baukrowitz T, Tucker SJ, Sansom MS. PIP2-Binding to an Open State Model of Kir1.1 Probed by Multiscale Biomolecular Simulations Biophysical Journal. 100: 431a. DOI: 10.1016/J.Bpj.2010.12.2547  0.688
2011 Stansfeld PJ, Sansom MS. Biomolecular Simulations of Kir Channel Gating and Membrane Phospholipid Interactions Biophysical Journal. 100: 431a. DOI: 10.1016/J.Bpj.2010.12.2546  0.564
2011 Parton DL, Baaden M, Sansom MS. Coarse-Grained Molecular Dynamics Simulations of the Entire Influenza Virus Envelope Biophysical Journal. 100: 403a. DOI: 10.1016/J.Bpj.2010.12.2392  0.433
2011 Fowler PW, Sansom MS. Voltage-Gated Potassium Ion Channels are Frustrated Biophysical Journal. 100: 367a-368a. DOI: 10.1016/J.Bpj.2010.12.2194  0.491
2011 Dawson DC, Sansom M. Invited Speaker CFTR: Molecular Models of the Anion Conduction Path Biophysical Journal. 100: 363a-364a. DOI: 10.1016/J.Bpj.2010.12.2175  0.48
2011 Beckstein O, Sansom MS. Conformational Space and Dynamics of Sodium-Coupled Symporters Biophysical Journal. 100: 362a. DOI: 10.1016/J.Bpj.2010.12.2169  0.414
2011 Rouse SL, Sansom MS. Molecular Dynamics Simulations of the BM2 Proton Channel: Interactions with Lipids and Detergents Biophysical Journal. 100: 346a. DOI: 10.1016/J.Bpj.2010.12.2089  0.545
2011 Andres-Enguix I, Shang L, Stansfeld P, Sansom MS, Cader MZ, Tucker SJ. Functional Analysis of Mutations in the TRESK K2P Potassium Channel Associated with ‘migraine with Aura’ Biophysical Journal. 100: 279a. DOI: 10.1016/J.Bpj.2010.12.1733  0.582
2011 Beckstein O, Norimatsu Y, Alexander C, Dawson DC, Sansom MS. Electrostatic Basis of Anion Over Cation Selectivity in the CFTR Chloride Channel Biophysical Journal. 100: 263a. DOI: 10.1016/j.bpj.2010.12.1652  0.316
2011 Norimatsu Y, Ivetac A, O'Donnell N, Kirkham J, Frye L, Brewer M, Sansom M, Dawson DC. Binding of GlyH-101 in the Pore of the CFTR Chloride Channel Biophysical Journal. 100: 263a. DOI: 10.1016/J.Bpj.2010.12.1649  0.41
2011 Reddy T, Hall B, Chetwynd A, Sansom MS. Molecular Dynamics Simulations of the Transmembrane Helix of the FGFR3 Receptor in POPC and DPPC Biophysical Journal. 100: 254a. DOI: 10.1016/J.Bpj.2010.12.1606  0.368
2011 Fowler PW, Newstead S, Sansom MS. How Do Peptides and Drugs Bind to the Peptide Transporters? Biophysical Journal. 100: 247a. DOI: 10.1016/J.Bpj.2010.12.1564  0.32
2011 Stansfeld PJ, Jefferys EE, Sansom MS. Multiscale Simulations of Lipid Interactions with Integral Membrane Proteins: Aquaporins Biophysical Journal. 100: 204a. DOI: 10.1016/J.Bpj.2010.12.1327  0.445
2011 Hall BA, Chetwynd A, Sansom MS. Insertion Properties of Cftr Explored with High Throughput, Coarse Grain Molecular Dynamics Biophysical Journal. 100: 203a-204a. DOI: 10.1016/J.Bpj.2010.12.1324  0.364
2010 Paynter JJ, Andres-Enguix I, Fowler PW, Tottey S, Cheng W, Enkvetchakul D, Bavro VN, Kusakabe Y, Sansom MS, Robinson NJ, Nichols CG, Tucker SJ. Functional complementation and genetic deletion studies of KirBac channels: activatory mutations highlight gating-sensitive domains. The Journal of Biological Chemistry. 285: 40754-61. PMID 20876570 DOI: 10.1074/Jbc.M110.175687  0.644
2010 Ramsey IS, Mokrab Y, Carvacho I, Sands ZA, Sansom MS, Clapham DE. An aqueous H+ permeation pathway in the voltage-gated proton channel Hv1. Nature Structural & Molecular Biology. 17: 869-75. PMID 20543828 DOI: 10.1038/Nsmb.1826  0.42
2010 Aittoniemi J, de Wet H, Ashcroft FM, Sansom MS. Asymmetric switching in a homodimeric ABC transporter: a simulation study. Plos Computational Biology. 6: e1000762. PMID 20454684 DOI: 10.1371/Journal.Pcbi.1000762  0.423
2010 Shimamura T, Weyand S, Beckstein O, Rutherford NG, Hadden JM, Sharples D, Sansom MS, Iwata S, Henderson PJ, Cameron AD. Molecular basis of alternating access membrane transport by the sodium-hydantoin transporter Mhp1. Science (New York, N.Y.). 328: 470-3. PMID 20413494 DOI: 10.1126/Science.1186303  0.7
2010 Wee CL, Gavaghan D, Sansom MS. Interactions between a voltage sensor and a toxin via multiscale simulations. Biophysical Journal. 98: 1558-65. PMID 20409475 DOI: 10.1016/J.Bpj.2009.12.4321  0.523
2010 Psachoulia E, Marshall DP, Sansom MS. Molecular dynamics simulations of the dimerization of transmembrane alpha-helices. Accounts of Chemical Research. 43: 388-96. PMID 20017540 DOI: 10.1021/Ar900211K  0.484
2010 Randa HS, Forrest LR, Voth GA, Sansom MS. Molecular dynamics of synthetic leucine-serine ion channels in a phospholipid membrane. Biophysical Journal. 77: 2400-10. PMID 10545343 DOI: 10.1016/S0006-3495(99)77077-3  0.706
2010 Aittoniemi J, Ashcroft FM, Sansom MS. Investigation of Protonation Effects on ATP Binding in ABC Transporters Biophysical Journal. 98: 759a. DOI: 10.1016/J.Bpj.2009.12.4169  0.396
2010 Wallace EJ, Ryan JF, Sansom MS. Molecular Dynamics Study of CNT Nanopores Embedded in Lipid Bilayers Biophysical Journal. 98: 757a. DOI: 10.1016/J.Bpj.2009.12.4158  0.405
2010 Stansfeld PJ, Hopkinson RJ, Ashcroft FM, Sansom MS. Investigating the PIP2 Binding Site in Kir Channels Via Multi-Scale Biomolecular Simulations Biophysical Journal. 98: 698a. DOI: 10.1016/J.Bpj.2009.12.3833  0.522
2010 Bollepalli MK, Fowler P, Rapedius M, Xie M, Shang L, Fritzenschaft H, Sansom M, Tucker SJ, Baukrowitz T. A Structural Model of a Kir Channel in the Open State Derived from Mutagenic Scanning of the Pore Gating Energetics Biophysical Journal. 98: 697a. DOI: 10.1016/J.Bpj.2009.12.3825  0.619
2010 Asi AM, Sansom MS. Structural Quality and MD Simulations of Homology Models of Major Facilitator Superfamily (MFS) Transporter Proteins Biophysical Journal. 98: 645a. DOI: 10.1016/J.Bpj.2009.12.3536  0.377
2010 Hall BA, Vostrikov VV, Koeppe RE, Sansom MS. Sensitivity of Coarse Grain Models of Peptides to the Introduction of Charged Residues in Model Peptides and Bacterial Chemoreceptors Biophysical Journal. 98: 644a. DOI: 10.1016/J.Bpj.2009.12.3530  0.419
2010 Beckstein O, Shimamura T, Weyand S, Rutherford N, Hadden JM, Sharples D, Iwata S, Henderson PJ, Cameron AD, Sansom MS. Molecular Basis of the “Alternate Access Model” in the Cation-Substrate Symporter Mhp1 from Computer Simulations and X-Ray Crystallography Biophysical Journal. 98: 628a. DOI: 10.1016/J.Bpj.2009.12.3439  0.387
2010 Klingelhoefer JW, Carpenter T, Parton DL, Sansom MS. Biophysics of Transmembrane Pores - Interactions by Coarse-Grained Molecular Dynamics Simulation Biophysical Journal. 98: 570a. DOI: 10.1016/J.Bpj.2009.12.3091  0.443
2010 Pongprayoon P, Beckstein O, Wee CL, Sansom M. Anion Translocation in a Brush-Like Nanopore: Simulations of the Outer Membrnae Protein OprP Biophysical Journal. 98: 51a. DOI: 10.1016/J.Bpj.2009.12.292  0.479
2010 Psachoulia E, Nikolaidi B, Marshall D, Sansom MS. Molecular Dynamics Simulations of the Dimerization of Transmembrane α-Helices Biophysical Journal. 98: 417a. DOI: 10.1016/J.Bpj.2009.12.2255  0.438
2010 Piechotta PL, Stansfeld PJ, Bollepalli MK, Rapedius M, Andres-Enguix I, Shang L, Fritzenschaft H, Sansom MS, Tucker S, Baukrowitz T. TREK Channel Pore Probed by Cysteine Scanning Mutagenesis and Structural Modelling Biophysical Journal. 98: 327a. DOI: 10.1016/J.Bpj.2009.12.1773  0.667
2010 Norimatsu Y, Ivetac A, Kirkham J, Frye L, Brewer M, Sansom M, Dawson DC. Identification of Possible Binding Sites for the CFTR Pore Blocker, GlyH-101 Biophysical Journal. 98: 323a. DOI: 10.1016/J.Bpj.2009.12.1752  0.418
2010 Alexander C, Ivetac A, Norimatsu Y, Sansom M, Dawson DC. Homology Modeling and Molecular Dynamics Simulation Predict Side-Chain Orientations and Conformational Changes in the Pore of the CFTR Chloride Channel Biophysical Journal. 98: 323a. DOI: 10.1016/J.Bpj.2009.12.1751  0.462
2009 Hall BA, Sansom MS. Coarse-Grained MD Simulations and Protein-Protein Interactions: The Cohesin-Dockerin System. Journal of Chemical Theory and Computation. 5: 2465-71. PMID 26616626 DOI: 10.1021/Ct900140W  0.349
2009 Stansfeld PJ, Hopkinson R, Ashcroft FM, Sansom MS. PIP(2)-binding site in Kir channels: definition by multiscale biomolecular simulations. Biochemistry. 48: 10926-33. PMID 19839652 DOI: 10.1021/Bi9013193  0.536
2009 Alexander C, Ivetac A, Liu X, Norimatsu Y, Serrano JR, Landstrom A, Sansom M, Dawson DC. Cystic fibrosis transmembrane conductance regulator: Using differential reactivity toward channel-permeant and channel-impermeant thiol-reactive probes to test a molecular model for the pore Biochemistry. 48: 10078-10088. PMID 19754156 DOI: 10.1021/Bi901314C  0.486
2009 Newstead S, Fowler PW, Bilton P, Carpenter EP, Sadler PJ, Campopiano DJ, Sansom MS, Iwata S. Insights into how nucleotide-binding domains power ABC transport. Structure (London, England : 1993). 17: 1213-22. PMID 19748342 DOI: 10.1016/J.Str.2009.07.009  0.331
2009 Tai K, Stansfeld PJ, Sansom MS. Ion-blocking sites of the Kir2.1 channel revealed by multiscale modeling. Biochemistry. 48: 8758-63. PMID 19653656 DOI: 10.1021/Bi9007808  0.49
2009 Durrieu MP, Bond PJ, Sansom MS, Lavery R, Baaden M. Coarse-grain simulations of the R-SNARE fusion protein in its membrane environment detect long-lived conformational sub-states. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1548-52. PMID 19479895 DOI: 10.1002/Cphc.200900216  0.386
2009 D'Rozario RS, Wee CL, Wallace EJ, Sansom MS. The interaction of C60 and its derivatives with a lipid bilayer via molecular dynamics simulations. Nanotechnology. 20: 115102. PMID 19420432 DOI: 10.1088/0957-4484/20/11/115102  0.374
2009 Wallace EJ, Sansom MS. Carbon nanotube self-assembly with lipids and detergent: a molecular dynamics study. Nanotechnology. 20: 045101. PMID 19417309 DOI: 10.1088/0957-4484/20/4/045101  0.311
2009 Klingelhoefer JW, Carpenter T, Sansom MS. Peptide nanopores and lipid bilayers: interactions by coarse-grained molecular-dynamics simulations. Biophysical Journal. 96: 3519-28. PMID 19413958 DOI: 10.1016/J.Bpj.2009.01.046  0.404
2009 Cox K, Sansom MS. One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP. Molecular Membrane Biology. 26: 205-14. PMID 19280380 DOI: 10.1080/09687680902788967  0.441
2009 Tai K, Haider S, Grottesi A, Sansom MS. Ion channel gates: comparative analysis of energy barriers. European Biophysics Journal : Ebj. 38: 347-54. PMID 18923825 DOI: 10.1007/S00249-008-0377-X  0.5
2009 Ramsey IS, Carvacho I, Mokrab Y, Sansom MS, Clapham DE. H+ Permeation in Hv1 Voltage-gated Proton Channels Biophysical Journal. 96: 661a. DOI: 10.1016/J.Bpj.2008.12.3495  0.42
2009 Balali-mood K, Sansom MS. Folding and Assembly of Membrane Proteins: Coarse Grained Molecular Dynamics Simulations of EmrE Biophysical Journal. 96: 379a. DOI: 10.1016/J.Bpj.2008.12.2843  0.41
2009 Mokrab Y, Sansom MS. Voltage Sensors: Diverse sequences but common bilayer interactions? Biophysical Journal. 96: 483a. DOI: 10.1016/J.Bpj.2008.12.2493  0.553
2009 Wee CL, Sansom MS. Interactions of the S4 Helix of a Kv Channel with a Lipid Bilayer: Free Energy Calculations via Coarse-Grained Molecular Dynamics Simulations Biophysical Journal. 96: 483a. DOI: 10.1016/J.Bpj.2008.12.2491  0.481
2009 Pongprayoon P, Wallace EJ, Sansom MS. Dynamics of Phosphate Transport by the Anion-specific Outer Membrane Protein OprP Biophysical Journal. 96: 471a. DOI: 10.1016/J.Bpj.2008.12.2425  0.411
2009 Norimatsu Y, Ivetac A, Alexander C, Liu X, Sansom M, Dawson DC. CFTR: Differential Reactivity, State-dependent Accessibility And Blocker Occlusion Of Cysteines Substituted For Adjacent Residues In TM6 Biophysical Journal. 96: 468a-469a. DOI: 10.1016/J.Bpj.2008.12.2412  0.469
2009 Tai K, Sansom MS. Modelling and simulations of the inward-rectifying potassium channel Kir2.1 Biophysical Journal. 96: 463a. DOI: 10.1016/J.Bpj.2008.12.2384  0.5
2009 Bollepalli MK, Rapedius M, Fowler P, Xie M, Shang L, Fritzenschaft H, Sansom MS, Tucker SJ, Baukrowitz T. Gating Sensitive Residues In The Pore Of An Inwardly Rectifying Potassium (Kir) Channel Biophysical Journal. 96: 462a. DOI: 10.1016/J.Bpj.2008.12.2378  0.595
2009 Aittoniemi J, de Wet H, Ashcroft FM, Sansom MS. Stochastic Switching Into Hydrolytically Active Conformations In A Homodimeric ABC Exporter Biophysical Journal. 96: 430a. DOI: 10.1016/J.Bpj.2008.12.2202  0.355
2009 Mokrab Y, Sansom MS. Hv1: How A Voltage-sensor May Form A Channel Biophysical Journal. 96: 370a. DOI: 10.1016/J.Bpj.2008.12.1993  0.521
2009 Hall BA, Chetwynd A, Franzese R, Sansom MS. High Throughput Coarse-Grained Simulations of the Insertion of Transmembrane Helices Biophysical Journal. 96: 194a. DOI: 10.1016/J.Bpj.2008.12.1040  0.424
2008 Tai K, Fowler P, Mokrab Y, Stansfeld P, Sansom MS. Molecular modeling and simulation studies of ion channel structures, dynamics and mechanisms. Methods in Cell Biology. 90: 233-65. PMID 19195554 DOI: 10.1016/S0091-679X(08)00812-1  0.534
2008 Labro AJ, Raes AL, Grottesi A, Van Hoorick D, Sansom MS, Snyders DJ. Kv channel gating requires a compatible S4-S5 linker and bottom part of S6, constrained by non-interacting residues. The Journal of General Physiology. 132: 667-80. PMID 19029374 DOI: 10.1085/Jgp.200810048  0.301
2008 Johnston JM, Khalid S, Sansom MS. Conformational dynamics of the mitochondrial ADP/ATP carrier: a simulation study. Molecular Membrane Biology. 25: 506-17. PMID 18988066 DOI: 10.1080/09687680802459271  0.398
2008 Chetwynd AP, Scott KA, Mokrab Y, Sansom MS. CGDB: a database of membrane protein/lipid interactions by coarse-grained molecular dynamics simulations. Molecular Membrane Biology. 25: 662-9. PMID 18937097 DOI: 10.1080/09687680802446534  0.432
2008 Vaccaro L, Scott KA, Sansom MS. Gating at both ends and breathing in the middle: conformational dynamics of TolC. Biophysical Journal. 95: 5681-91. PMID 18835894 DOI: 10.1529/Biophysj.108.136028  0.471
2008 Fowler PW, Tai K, Sansom MS. The selectivity of K+ ion channels: testing the hypotheses. Biophysical Journal. 95: 5062-72. PMID 18790851 DOI: 10.1529/Biophysj.108.132035  0.433
2008 Psachoulia E, Fowler PW, Bond PJ, Sansom MS. Helix-helix interactions in membrane proteins: coarse-grained simulations of glycophorin a helix dimerization. Biochemistry. 47: 10503-12. PMID 18783247 DOI: 10.1021/Bi800678T  0.429
2008 Sherwood P, Brooks BR, Sansom MS. Multiscale methods for macromolecular simulations. Current Opinion in Structural Biology. 18: 630-40. PMID 18721882 DOI: 10.1016/J.Sbi.2008.07.003  0.346
2008 Wallace EJ, Sansom MS. Blocking of carbon nanotube based nanoinjectors by lipids: a simulation study. Nano Letters. 8: 2751-6. PMID 18665655 DOI: 10.1021/Nl801217F  0.345
2008 Wee CL, Gavaghan D, Sansom MS. Lipid bilayer deformation and the free energy of interaction of a Kv channel gating-modifier toxin. Biophysical Journal. 95: 3816-26. PMID 18621840 DOI: 10.1529/Biophysj.108.130971  0.504
2008 Rodrigues ML, Scott KA, Sansom MS, Pereira IA, Archer M. Quinol oxidation by c-type cytochromes: structural characterization of the menaquinol binding site of NrfHA. Journal of Molecular Biology. 381: 341-50. PMID 18597779 DOI: 10.1016/J.Jmb.2008.05.066  0.353
2008 Stansfeld PJ, Grottesi A, Sands ZA, Sansom MS, Gedeck P, Gosling M, Cox B, Stanfield PR, Mitcheson JS, Sutcliffe MJ. Insight into the mechanism of inactivation and pH sensitivity in potassium channels from molecular dynamics simulations. Biochemistry. 47: 7414-22. PMID 18558719 DOI: 10.1021/Bi800475J  0.484
2008 de Wet H, Proks P, Lafond M, Aittoniemi J, Sansom MS, Flanagan SE, Pearson ER, Hattersley AT, Ashcroft FM. A mutation (R826W) in nucleotide-binding domain 1 of ABCC8 reduces ATPase activity and causes transient neonatal diabetes. Embo Reports. 9: 648-54. PMID 18497752 DOI: 10.1038/Embor.2008.71  0.37
2008 Wee CL, Balali-Mood K, Gavaghan D, Sansom MS. The interaction of phospholipase A2 with a phospholipid bilayer: coarse-grained molecular dynamics simulations. Biophysical Journal. 95: 1649-57. PMID 18469074 DOI: 10.1529/Biophysj.107.123190  0.45
2008 Wee CL, Sansom MS, Reich S, Akhmatskaya E. Improved sampling for simulations of interfacial membrane proteins: application of generalized shadow hybrid Monte Carlo to a peptide toxin/bilayer system. The Journal of Physical Chemistry. B. 112: 5710-7. PMID 18412407 DOI: 10.1021/Jp076712U  0.367
2008 Lindahl E, Sansom MS. Membrane proteins: molecular dynamics simulations. Current Opinion in Structural Biology. 18: 425-31. PMID 18406600 DOI: 10.1016/J.Sbi.2008.02.003  0.514
2008 Scott KA, Bond PJ, Ivetac A, Chetwynd AP, Khalid S, Sansom MS. Coarse-grained MD simulations of membrane protein-bilayer self-assembly. Structure (London, England : 1993). 16: 621-30. PMID 18400182 DOI: 10.1016/J.Str.2008.01.014  0.404
2008 Labro AJ, Grottesi A, Sansom MS, Raes AL, Snyders DJ. A Kv channel with an altered activation gate sequence displays both "fast" and "slow" activation kinetics. American Journal of Physiology. Cell Physiology. 294: C1476-84. PMID 18385285 DOI: 10.1152/Ajpcell.00479.2007  0.47
2008 Amiri S, Shimomura M, Vijayan R, Nishiwaki H, Akamatsu M, Matsuda K, Jones AK, Sansom MS, Biggin PC, Sattelle DB. A role for Leu118 of loop E in agonist binding to the alpha 7 nicotinic acetylcholine receptor. Molecular Pharmacology. 73: 1659-67. PMID 18339894 DOI: 10.1124/Mol.107.041590  0.362
2008 Sansom MS, Scott KA, Bond PJ. Coarse-grained simulation: a high-throughput computational approach to membrane proteins. Biochemical Society Transactions. 36: 27-32. PMID 18208379 DOI: 10.1042/Bst0360027  0.458
2008 Cox K, Bond PJ, Grottesi A, Baaden M, Sansom MS. Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers. European Biophysics Journal : Ebj. 37: 131-41. PMID 17551722 DOI: 10.1007/S00249-007-0185-8  0.384
2007 Rapedius M, Paynter JJ, Fowler PW, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. Control of pH and PIP2 gating in heteromeric Kir4.1/Kir5.1 channels by H-Bonding at the helix-bundle crossing. Channels (Austin, Tex.). 1: 327-30. PMID 18690035 DOI: 10.4161/Chan.5176  0.621
2007 de Wet H, Rees MG, Shimomura K, Aittoniemi J, Patch AM, Flanagan SE, Ellard S, Hattersley AT, Sansom MS, Ashcroft FM. Increased ATPase activity produced by mutations at arginine-1380 in nucleotide-binding domain 2 of ABCC8 causes neonatal diabetes. Proceedings of the National Academy of Sciences of the United States of America. 104: 18988-92. PMID 18025464 DOI: 10.1073/Pnas.0707428104  0.37
2007 Ivetac A, Sansom MS. Molecular dynamics simulations and membrane protein structure quality. European Biophysics Journal : Ebj. 37: 403-9. PMID 17960373 DOI: 10.1007/S00249-007-0225-4  0.451
2007 Rapedius M, Fowler PW, Shang L, Sansom MS, Tucker SJ, Baukrowitz T. H bonding at the helix-bundle crossing controls gating in Kir potassium channels. Neuron. 55: 602-14. PMID 17698013 DOI: 10.1016/J.Neuron.2007.07.026  0.642
2007 Haider S, Tarasov AI, Craig TJ, Sansom MS, Ashcroft FM. Identification of the PIP2-binding site on Kir6.2 by molecular modelling and functional analysis. The Embo Journal. 26: 3749-59. PMID 17673911 DOI: 10.1038/Sj.Emboj.7601809  0.458
2007 Amiri S, Sansom MS, Biggin PC. Molecular dynamics studies of AChBP with nicotine and carbamylcholine: the role of water in the binding pocket. Protein Engineering, Design & Selection : Peds. 20: 353-9. PMID 17595341 DOI: 10.1093/Protein/Gzm029  0.351
2007 Haider S, Khalid S, Tucker SJ, Ashcroft FM, Sansom MS. Molecular dynamics simulations of inwardly rectifying (Kir) potassium channels: a comparative study. Biochemistry. 46: 3643-52. PMID 17326663 DOI: 10.1021/Bi062210F  0.718
2007 Fowler PW, Balali-Mood K, Deol S, Coveney PV, Sansom MS. Monotopic enzymes and lipid bilayers: a comparative study. Biochemistry. 46: 3108-15. PMID 17311421 DOI: 10.1021/Bi602455N  0.417
2007 Sands ZA, Sansom MS. How does a voltage sensor interact with a lipid bilayer? Simulations of a potassium channel domain. Structure (London, England : 1993). 15: 235-44. PMID 17292841 DOI: 10.1016/J.Str.2007.01.004  0.513
2007 Kaye SL, Sansom MS, Biggin PC. In silico mutation of cysteine residues in the ligand-binding domain of an N-methyl-D-aspartate receptor. Biochemistry. 46: 2136-45. PMID 17269660 DOI: 10.1021/Bi061462D  0.356
2007 Ulmschneider MB, Ulmschneider JP, Sansom MS, Di Nola A. A generalized born implicit-membrane representation compared to experimental insertion free energies. Biophysical Journal. 92: 2338-49. PMID 17218457 DOI: 10.1529/Biophysj.106.081810  0.685
2007 Bond PJ, Derrick JP, Sansom MS. Membrane simulations of OpcA: gating in the loops? Biophysical Journal. 92: L23-5. PMID 17114231 DOI: 10.1529/Biophysj.106.097311  0.472
2007 Cosette P, Kerr ID, La Rocca P, Duclohier H, Sansom MS. Secondary structure of an isolated P-region from the voltage-gated sodium channel: a molecular modelling/dynamics study. Biophysical Chemistry. 69: 221-32. PMID 17029930 DOI: 10.1016/S0301-4622(97)00099-9  0.468
2006 Murdock SE, Tai K, Ng MH, Johnston S, Wu B, Fangohr H, Laughton CA, Essex JW, Sansom MS. Quality Assurance for Biomolecular Simulations. Journal of Chemical Theory and Computation. 2: 1477-81. PMID 26627017 DOI: 10.1021/Ct6001708  0.329
2006 Lee PA, Orriss GL, Buchanan G, Greene NP, Bond PJ, Punginelli C, Jack RL, Sansom MS, Berks BC, Palmer T. Cysteine-scanning mutagenesis and disulfide mapping studies of the conserved domain of the twin-arginine translocase TatB component. The Journal of Biological Chemistry. 281: 34072-85. PMID 16973610 DOI: 10.1074/Jbc.M607295200  0.415
2006 Bennett M, D'Rozario R, Sansom MS, Yeagle PL. Asymmetric stability among the transmembrane helices of lactose permease. Biochemistry. 45: 8088-95. PMID 16800633 DOI: 10.1021/Bi060355G  0.383
2006 Vaccaro L, Koronakis V, Sansom MS. Flexibility in a drug transport accessory protein: molecular dynamics simulations of MexA. Biophysical Journal. 91: 558-64. PMID 16648168 DOI: 10.1529/Biophysj.105.080010  0.383
2006 Rapedius M, Haider S, Browne KF, Shang L, Sansom MS, Baukrowitz T, Tucker SJ. Structural and functional analysis of the putative pH sensor in the Kir1.1 (ROMK) potassium channel. Embo Reports. 7: 611-6. PMID 16641935 DOI: 10.1038/Sj.Embor.7400678  0.563
2006 Kaye SL, Sansom MS, Biggin PC. Molecular dynamics simulations of the ligand-binding domain of an N-methyl-D-aspartate receptor. The Journal of Biological Chemistry. 281: 12736-42. PMID 16513640 DOI: 10.1074/Jbc.M512728200  0.347
2006 Bright JN, Sansom MS. Kv channel S6 helix as a molecular switch: simulation studies. Iee Proceedings. Nanobiotechnology. 151: 17-27. PMID 16475839 DOI: 10.1049/IP-NBT:20040101  0.451
2006 Johnston JM, Cook GA, Tomich JM, Sansom MS. Conformation and environment of channel-forming peptides: a simulation study. Biophysical Journal. 90: 1855-64. PMID 16387778 DOI: 10.1529/Biophysj.105.069625  0.443
2006 Arinaminpathy Y, Sansom MS, Biggin PC. Binding site flexibility: molecular simulation of partial and full agonists within a glutamate receptor. Molecular Pharmacology. 69: 11-8. PMID 16219907 DOI: 10.1124/Mol.105.016691  0.416
2006 Grottesi A, Sands ZA, Sansom MS. Potassium channels: complete and undistorted. Current Biology : Cb. 15: R771-4. PMID 16169480 DOI: 10.1016/J.Cub.2005.08.054  0.493
2006 Ulmschneider MB, Sansom MS, Di Nola A. Properties of integral membrane protein structures: derivation of an implicit membrane potential. Proteins. 59: 252-65. PMID 15723347 DOI: 10.1002/Prot.20334  0.682
2005 Ulmschneider MB, Sansom MS, Di Nola A. Evaluating tilt angles of membrane-associated helices: comparison of computational and NMR techniques. Biophysical Journal. 90: 1650-60. PMID 16339877 DOI: 10.1529/Biophysj.105.065367  0.689
2005 Sands ZA, Grottesi A, Sansom MS. The intrinsic flexibility of the Kv voltage sensor and its implications for channel gating. Biophysical Journal. 90: 1598-606. PMID 16326912 DOI: 10.1529/Biophysj.105.072199  0.453
2005 Mikhailov MV, Campbell JD, de Wet H, Shimomura K, Zadek B, Collins RF, Sansom MS, Ford RC, Ashcroft FM. 3-D structural and functional characterization of the purified KATP channel complex Kir6.2-SUR1. The Embo Journal. 24: 4166-75. PMID 16308567 DOI: 10.1038/Sj.Emboj.7600877  0.487
2005 Grottesi A, Domene C, Hall B, Sansom MS. Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations. Biochemistry. 44: 14586-94. PMID 16262258 DOI: 10.1021/Bi0510429  0.507
2005 Ulmschneider MB, Tieleman DP, Sansom MS. The role of extra-membranous inter-helical loops in helix-helix interactions. Protein Engineering, Design & Selection : Peds. 18: 563-70. PMID 16251222 DOI: 10.1093/Protein/Gzi059  0.701
2005 Pang A, Arinaminpathy Y, Sansom MS, Biggin PC. Comparative molecular dynamics--similar folds and similar motions? Proteins. 61: 809-22. PMID 16231327 DOI: 10.1002/Prot.20672  0.344
2005 Law RJ, Capener C, Baaden M, Bond PJ, Campbell J, Patargias G, Arinaminpathy Y, Sansom MS. Membrane protein structure quality in molecular dynamics simulation. Journal of Molecular Graphics & Modelling. 24: 157-65. PMID 16102990 DOI: 10.1016/J.Jmgm.2005.05.006  0.401
2005 Amiri S, Tai K, Beckstein O, Biggin PC, Sansom MS. The alpha7 nicotinic acetylcholine receptor: molecular modelling, electrostatics, and energetics. Molecular Membrane Biology. 22: 151-62. PMID 16096259 DOI: 10.1080/09687860500063340  0.719
2005 Cuthbertson JM, Doyle DA, Sansom MS. Transmembrane helix prediction: a comparative evaluation and analysis. Protein Engineering, Design & Selection : Peds. 18: 295-308. PMID 15932905 DOI: 10.1093/Protein/Gzi032  0.367
2005 Haider S, Antcliff JF, Proks P, Sansom MS, Ashcroft FM. Focus on Kir6.2: a key component of the ATP-sensitive potassium channel. Journal of Molecular and Cellular Cardiology. 38: 927-36. PMID 15910877 DOI: 10.1016/J.Yjmcc.2005.01.007  0.386
2005 Proks P, Girard C, Haider S, Gloyn AL, Hattersley AT, Sansom MS, Ashcroft FM. A gating mutation at the internal mouth of the Kir6.2 pore is associated with DEND syndrome. Embo Reports. 6: 470-5. PMID 15864298 DOI: 10.1038/Sj.Embor.7400393  0.402
2005 Haider S, Grottesi A, Hall BA, Ashcroft FM, Sansom MS. Conformational dynamics of the ligand-binding domain of inward rectifier K channels as revealed by molecular dynamics simulations: toward an understanding of Kir channel gating. Biophysical Journal. 88: 3310-20. PMID 15749783 DOI: 10.1529/Biophysj.104.052019  0.512
2005 Hung A, Tai K, Sansom MS. Molecular dynamics simulation of the M2 helices within the nicotinic acetylcholine receptor transmembrane domain: structure and collective motions. Biophysical Journal. 88: 3321-33. PMID 15722430 DOI: 10.1529/Biophysj.104.052878  0.384
2005 Sands Z, Grottesi A, Sansom MS. Voltage-gated ion channels. Current Biology : Cb. 15: R44-7. PMID 15668152 DOI: 10.1016/J.Cub.2004.12.050  0.473
2005 Antcliff JF, Haider S, Proks P, Sansom MS, Ashcroft FM. Functional analysis of a structural model of the ATP-binding site of the KATP channel Kir6.2 subunit. The Embo Journal. 24: 229-39. PMID 15650751 DOI: 10.1038/Sj.Emboj.7600487  0.443
2004 Campbell JD, Proks P, Lippiat JD, Sansom MS, Ashcroft FM. Identification of a functionally important negatively charged residue within the second catalytic site of the SUR1 nucleotide-binding domains. Diabetes. 53: S123-7. PMID 15561899 DOI: 10.2337/Diabetes.53.Suppl_3.S123  0.474
2004 Beckstein O, Tai K, Sansom MS. Not ions alone: barriers to ion permeation in nanopores and channels. Journal of the American Chemical Society. 126: 14694-5. PMID 15535674 DOI: 10.1021/Ja045271E  0.717
2004 Campbell JD, Deol SS, Ashcroft FM, Kerr ID, Sansom MS. Nucleotide-dependent conformational changes in HisP: molecular dynamics simulations of an ABC transporter nucleotide-binding domain. Biophysical Journal. 87: 3703-15. PMID 15377525 DOI: 10.1529/Biophysj.104.046870  0.409
2004 Faraldo-Gómez JD, Forrest LR, Baaden M, Bond PJ, Domene C, Patargias G, Cuthbertson J, Sansom MS. Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations. Proteins. 57: 783-91. PMID 15317024 DOI: 10.1002/Prot.20257  0.678
2004 Baaden M, Sansom MS. OmpT: molecular dynamics simulations of an outer membrane enzyme. Biophysical Journal. 87: 2942-53. PMID 15315948 DOI: 10.1529/Biophysj.104.046987  0.436
2004 Zhao J, Davis JJ, Sansom MS, Hung A. Exploring the electronic and mechanical properties of protein using conducting atomic force microscopy. Journal of the American Chemical Society. 126: 5601-9. PMID 15113232 DOI: 10.1021/Ja039392A  0.301
2004 Law RJ, Sansom MS. Homology modelling and molecular dynamics simulations: comparative studies of human aquaporin-1. European Biophysics Journal : Ebj. 33: 477-89. PMID 15071758 DOI: 10.1007/S00249-004-0398-Z  0.41
2004 Domene C, Sansom MS. Potassium channel, ions, and water: simulation studies based on the high resolution X-ray structure of KcsA. Biophysical Journal. 85: 2787-800. PMID 14581184 DOI: 10.1016/S0006-3495(03)74702-X  0.409
2004 Cuthbertson J, Sansom MS. Structural bioinformatics and molecular simulations: Looking at membrane proteins The Biochemist. 26: 25-28. DOI: 10.1042/bio02604025  0.34
2003 Domene C, Bond PJ, Sansom MS. Membrane protein simulations: ion channels and bacterial outer membrane proteins. Advances in Protein Chemistry. 66: 159-93. PMID 14631819 DOI: 10.1016/S0065-3233(03)66005-5  0.529
2003 Beckstein O, Biggin PC, Bond P, Bright JN, Domene C, Grottesi A, Holyoake J, Sansom MS. Ion channel gating: insights via molecular simulations. Febs Letters. 555: 85-90. PMID 14630324 DOI: 10.1016/S0014-5793(03)01151-7  0.786
2003 Domene C, Haider S, Sansom MS. Ion channel structures: a review of recent progress. Current Opinion in Drug Discovery & Development. 6: 611-9. PMID 14579510  0.407
2003 Holyoake J, Domene C, Bright JN, Sansom MS. KcsA closed and open: modelling and simulation studies. European Biophysics Journal : Ebj. 33: 238-46. PMID 14574522 DOI: 10.1007/S00249-003-0355-2  0.486
2003 Arinaminpathy Y, Biggin PC, Shrivastava IH, Sansom MS. A prokaryotic glutamate receptor: homology modelling and molecular dynamics simulations of GluR0. Febs Letters. 553: 321-7. PMID 14572644 DOI: 10.1016/S0014-5793(03)01036-6  0.504
2003 Stenham DR, Campbell JD, Sansom MS, Higgins CF, Kerr ID, Linton KJ. An atomic detail model for the human ATP binding cassette transporter P-glycoprotein derived from disulfide cross-linking and homology modeling. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 17: 2287-9. PMID 14563687 DOI: 10.1096/Fj.03-0107Fje  0.323
2003 Faraldo-Gómez JD, Smith GR, Sansom MS. Molecular dynamics simulations of the bacterial outer membrane protein FhuA: a comparative study of the ferrichrome-free and bound states. Biophysical Journal. 85: 1406-20. PMID 12944258 DOI: 10.1016/S0006-3495(03)74573-1  0.457
2003 Pang A, Arinaminpathy Y, Sansom MS, Biggin PC. Interdomain dynamics and ligand binding: molecular dynamics simulations of glutamine binding protein. Febs Letters. 550: 168-74. PMID 12935905 DOI: 10.1016/S0014-5793(03)00866-4  0.353
2003 Baaden M, Meier C, Sansom MS. A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA. Journal of Molecular Biology. 331: 177-89. PMID 12875844 DOI: 10.1016/S0022-2836(03)00718-6  0.386
2003 Campbell JD, Biggin PC, Baaden M, Sansom MS. Extending the structure of an ABC transporter to atomic resolution: modeling and simulation studies of MsbA. Biochemistry. 42: 3666-73. PMID 12667056 DOI: 10.1021/Bi027337T  0.411
2003 Biggin PC, Sansom MS. Mechanosensitive channels: stress relief. Current Biology : Cb. 13: R183-5. PMID 12620208 DOI: 10.1016/S0960-9822(03)00119-2  0.457
2003 Tieleman DP, Borisenko V, Sansom MS, Woolley GA. Understanding pH-dependent selectivity of alamethicin K18 channels by computer simulation. Biophysical Journal. 84: 1464-9. PMID 12609853 DOI: 10.1016/S0006-3495(03)74959-5  0.492
2003 Law RJ, Tieleman DP, Sansom MS. Pores formed by the nicotinic receptor m2delta Peptide: a molecular dynamics simulation study. Biophysical Journal. 84: 14-27. PMID 12524262 DOI: 10.1016/S0006-3495(03)74829-2  0.506
2003 Tieleman DP, Hess B, Sansom MS. Analysis and evaluation of channel models: simulations of alamethicin. Biophysical Journal. 83: 2393-407. PMID 12414676 DOI: 10.1016/S0006-3495(02)75253-3  0.498
2003 Sansom MS, Capener CE. Ion channels: open at last. Current Biology : Cb. 12: R566-8. PMID 12194840 DOI: 10.1016/S0960-9822(02)01056-4  0.464
2002 Sansom MS, Shrivastava IH, Bright JN, Tate J, Capener CE, Biggin PC. Potassium channels: structures, models, simulations. Biochimica Et Biophysica Acta. 1565: 294-307. PMID 12409202 DOI: 10.1016/S0005-2736(02)00576-X  0.515
2002 Biggin PC, Sansom MS. Open-state models of a potassium channel. Biophysical Journal. 83: 1867-76. PMID 12324408 DOI: 10.1016/S0006-3495(02)73951-9  0.479
2002 Shrivastava IH, Tieleman DP, Biggin PC, Sansom MS. K(+) versus Na(+) ions in a K channel selectivity filter: a simulation study. Biophysical Journal. 83: 633-45. PMID 12124253 DOI: 10.1016/S0006-3495(02)75197-7  0.35
2002 Faraldo-Gómez JD, Smith GR, Sansom MS. Setting up and optimization of membrane protein simulations. European Biophysics Journal : Ebj. 31: 217-27. PMID 12029334 DOI: 10.1007/S00249-002-0207-5  0.409
2002 Shrivastava IH, Sansom MS. Molecular dynamics simulations and KcsA channel gating. European Biophysics Journal : Ebj. 31: 207-16. PMID 12029333 DOI: 10.1007/S00249-002-0209-3  0.519
2002 Smith GR, Sansom MS. Free energy of a potassium ion in a model of the channel formed by an amphipathic leucine-serine peptide. European Biophysics Journal : Ebj. 31: 198-206. PMID 12029332 DOI: 10.1007/S00249-002-0206-6  0.5
2002 Sansom MS, Bond P, Beckstein O, Biggin PC, Faraldo-Gómez J, Law RJ, Patargias G, Tieleman DP. Water in ion channels and pores--simulation studies. Novartis Foundation Symposium. 245: 66-78; discussion 79. PMID 12027016  0.74
2002 Sansom MS. Introduction: stretching the envelope in structure-function studies of ion channels. Novartis Foundation Symposium. 245: 1-4; discussion 165-. PMID 12027002  0.35
2002 Mongan NP, Jones AK, Smith GR, Sansom MS, Sattelle DB. Novel alpha7-like nicotinic acetylcholine receptor subunits in the nematode Caenorhabditis elegans. Protein Science : a Publication of the Protein Society. 11: 1162-71. PMID 11967372 DOI: 10.1110/Ps.3040102  0.322
2002 Law RJ, Sansom MS. Water transporters: how so fast yet so selective? Current Biology : Cb. 12: R250-2. PMID 11937042 DOI: 10.1016/S0960-9822(02)00784-4  0.334
2002 Sansom MS, Shrivastava IH. Ion channels: frozen motion. Current Biology : Cb. 12: R65-7. PMID 11818082 DOI: 10.1016/S0960-9822(01)00676-5  0.466
2002 Arinaminpathy Y, Sansom MS, Biggin PC. Molecular dynamics simulations of the ligand-binding domain of the ionotropic glutamate receptor GluR2. Biophysical Journal. 82: 676-83. PMID 11806910 DOI: 10.1016/S0006-3495(02)75430-1  0.388
2001 Tieleman DP, Biggin PC, Smith GR, Sansom MS. Simulation approaches to ion channel structure-function relationships. Quarterly Reviews of Biophysics. 34: 473-561. PMID 11852594 DOI: 10.1017/S0033583501003729  0.46
2001 Ranatunga KM, Law RJ, Smith GR, Sansom MS. Electrostatics studies and molecular dynamics simulations of a homology model of the Shaker K+ channel pore. European Biophysics Journal : Ebj. 30: 295-303. PMID 11548132 DOI: 10.1007/S002490100134  0.498
2001 Cordes FS, Kukol A, Forrest LR, Arkin IT, Sansom MS, Fischer WB. The structure of the HIV-1 Vpu ion channel: modelling and simulation studies. Biochimica Et Biophysica Acta. 1512: 291-8. PMID 11406106 DOI: 10.1016/S0005-2736(01)00332-7  0.696
2001 Tieleman DP, Shrivastava IH, Ulmschneider MR, Sansom MS. Proline-induced hinges in transmembrane helices: possible roles in ion channel gating. Proteins. 44: 63-72. PMID 11391769 DOI: 10.1002/Prot.1073  0.515
2001 Biggin PC, Sansom MS. Channel gating: twist to open. Current Biology : Cb. 11: R364-6. PMID 11369249 DOI: 10.1016/S0960-9822(01)00195-6  0.449
2001 Biggin PC, Smith GR, Shrivastava I, Choe S, Sansom MS. Potassium and sodium ions in a potassium channel studied by molecular dynamics simulations. Biochimica Et Biophysica Acta. 1510: 1-9. PMID 11342142 DOI: 10.1016/S0005-2736(00)00345-X  0.414
2001 Ulmschneider MB, Sansom MS. Amino acid distributions in integral membrane protein structures. Biochimica Et Biophysica Acta. 1512: 1-14. PMID 11334619 DOI: 10.1016/S0005-2736(01)00299-1  0.671
2001 Sansom MS, Law RJ. Membrane proteins: Aquaporins--channels without ions. Current Biology : Cb. 11: R71-3. PMID 11231146 DOI: 10.1016/S0960-9822(01)00009-4  0.472
2001 Ranatunga KM, Shrivastava IH, Smith GR, Sansom MS. Side-chain ionization states in a potassium channel. Biophysical Journal. 80: 1210-9. PMID 11222285 DOI: 10.1016/S0006-3495(01)76097-3  0.417
2001 Tieleman DP, Berendsen HJ, Sansom MS. Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces. Biophysical Journal. 80: 331-46. PMID 11159406 DOI: 10.1016/S0006-3495(01)76018-3  0.453
2001 Sansom MS, Weinstein H. Hinges, swivels and switches: the role of prolines in signalling via transmembrane alpha-helices. Trends in Pharmacological Sciences. 21: 445-51. PMID 11121576 DOI: 10.1016/S0165-6147(00)01553-4  0.515
2000 Sansom MS, Davison L. Modeling transmembrane helix bundles by restrained MD simulations Methods in Molecular Biology (Clifton, N.J.). 143: 325-347. PMID 11084912 DOI: 10.1385/1-59259-368-2:325  0.358
2000 Fischer WB, Pitkeathly M, Wallace BA, Forrest LR, Smith GR, Sansom MS. Transmembrane peptide NB of influenza B: a simulation, structure, and conductance study. Biochemistry. 39: 12708-16. PMID 11027151 DOI: 10.1021/Bi001000E  0.682
2000 Schnick C, Forrest LR, Sansom MS, Groth G. Molecular contacts in the transmembrane c-subunit oligomer of F-ATPases identified by tryptophan substitution mutagenesis. Biochimica Et Biophysica Acta. 1459: 49-60. PMID 10924898 DOI: 10.1016/S0005-2728(00)00112-2  0.653
2000 Sansom MS, Shrivastava IH, Ranatunga KM, Smith GR. Simulations of ion channels--watching ions and water move. Trends in Biochemical Sciences. 25: 368-74. PMID 10916155 DOI: 10.1016/S0968-0004(00)01613-3  0.49
2000 Capener CE, Shrivastava IH, Ranatunga KM, Forrest LR, Smith GR, Sansom MS. Homology modeling and molecular dynamics simulation studies of an inward rectifier potassium channel. Biophysical Journal. 78: 2929-42. PMID 10827973 DOI: 10.1016/S0006-3495(00)76833-0  0.726
2000 Adcock C, Smith GR, Sansom MS. The nicotinic acetylcholine receptor: from molecular model to single-channel conductance. European Biophysics Journal : Ebj. 29: 29-37. PMID 10826776 DOI: 10.1007/S002490050248  0.488
2000 Fischer WB, Forrest LR, Smith GR, Sansom MS. Transmembrane domains of viral ion channel proteins: a molecular dynamics simulation study. Biopolymers. 53: 529-38. PMID 10766949 DOI: 10.1002/(Sici)1097-0282(200006)53:7<529::Aid-Bip1>3.0.Co;2-6  0.694
2000 Forrest LR, Sansom MS. Membrane simulations: Bigger and better? Current Opinion in Structural Biology. 10: 174-181. PMID 10753807 DOI: 10.1016/S0959-440X(00)00066-X  0.641
2000 Law RJ, Forrest LR, Ranatunga KM, La Rocca P, Tieleman DP, Sansom MS. Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles. Proteins. 39: 47-55. PMID 10737926 DOI: 10.1002/(Sici)1097-0134(20000401)39:1<47::Aid-Prot5>3.0.Co;2-A  0.696
2000 Sansom MS. Potassium channels: watching a voltage-sensor tilt and twist. Current Biology : Cb. 10: R206-9. PMID 10712896 DOI: 10.1016/S0960-9822(00)00354-7  0.398
2000 Borisenko V, Sansom MS, Woolley GA. Protonation of lysine residues inverts cation/anion selectivity in a model channel. Biophysical Journal. 78: 1335-48. PMID 10692320 DOI: 10.1016/S0006-3495(00)76688-4  0.45
2000 Son HS, Sansom MS. Simulation studies on bacteriorhodopsin alpha-helices. European Biophysics Journal : Ebj. 28: 674-82. PMID 10663534 DOI: 10.1007/S002490050007  0.435
2000 Son HS, Kerr ID, Sansom MS. Simulation studies on bacteriorhodopsin bundle of transmembrane alpha segments. European Biophysics Journal : Ebj. 28: 663-73. PMID 10663533 DOI: 10.1007/S002490050006  0.422
2000 Shrivastava IH, Sansom MS. Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer. Biophysical Journal. 78: 557-70. PMID 10653771 DOI: 10.1016/S0006-3495(00)76616-1  0.475
2000 Shrivastava IH, Capener CE, Forrest LR, Sansom MS. Structure and dynamics of K channel pore-lining helices: a comparative simulation study. Biophysical Journal. 78: 79-92. PMID 10620275 DOI: 10.1016/S0006-3495(00)76574-X  0.738
2000 Forrest LR, Kukol A, Arkin IT, Tieleman DP, Sansom MS. Exploring models of the influenza A M2 channel: MD simulations in a phospholipid bilayer. Biophysical Journal. 78: 55-69. PMID 10620273 DOI: 10.1016/S0006-3495(00)76572-6  0.737
2000 Sansom MS. Putting the parts together. Current Biology : Cb. 9: R738-41. PMID 10530995 DOI: 10.1016/S0960-9822(99)80472-2  0.469
1999 Sansom MS, Tieleman DP, Berendsen HJ. The mechanism of channel formation by alamethicin as viewed by molecular dynamics simulations. Novartis Foundation Symposium. 225: 128-41; discussion 1. PMID 10472052  0.459
1999 Woolley GA, Starostin AV, Butan R, James DA, Wenschuh H, Sansom MS. Engineering charge selectivity in alamethicin channels. Novartis Foundation Symposium. 225: 62-9; discussion 69-. PMID 10472048 DOI: 10.1002/9780470515716.CH5  0.344
1999 Son HS, Sansom MS. Simulation of the packing of idealized transmembrane alpha-helix bundles. European Biophysics Journal : Ebj. 28: 489-98. PMID 10460342 DOI: 10.1007/S002490050231  0.424
1999 Smith GR, Sansom MS. Effective diffusion coefficients of K+ and Cl- ions in ion channel models. Biophysical Chemistry. 79: 129-51. PMID 10389238 DOI: 10.1016/S0301-4622(99)00052-6  0.464
1999 Tieleman DP, Berendsen HJ, Sansom MS. Surface binding of alamethicin stabilizes its helical structure: molecular dynamics simulations. Biophysical Journal. 76: 3186-91. PMID 10354443 DOI: 10.1016/S0006-3495(99)77470-9  0.442
1999 Starostin AV, Butan R, Borisenko V, James DA, Wenschuh H, Sansom MS, Woolley GA. An anion-selective analogue of the channel-forming peptide alamethicin. Biochemistry. 38: 6144-50. PMID 10320341 DOI: 10.1021/Bi9826355  0.464
1999 Sansom MS. Membrane proteins: A tale of barrels and corks. Current Biology : Cb. 9: R254-7. PMID 10209114 DOI: 10.1016/S0960-9822(99)80157-2  0.358
1999 Forrest LR, Tieleman DP, Sansom MS. Defining the transmembrane helix of M2 protein from influenza A by molecular dynamics simulations in a lipid bilayer. Biophysical Journal. 76: 1886-96. PMID 10096886 DOI: 10.1016/S0006-3495(99)77347-9  0.679
1999 Tieleman DP, Berendsen HJ, Sansom MS. An alamethicin channel in a lipid bilayer: molecular dynamics simulations. Biophysical Journal. 76: 1757-69. PMID 10096876 DOI: 10.1016/S0006-3495(99)77337-6  0.506
1999 Biggin PC, Sansom MS. Interactions of alpha-helices with lipid bilayers: a review of simulation studies. Biophysical Chemistry. 76: 161-83. PMID 10074693 DOI: 10.1016/S0301-4622(98)00233-6  0.473
1999 Sansom MS. Ion channels: structure of a molecular brake. Current Biology : Cb. 9: R173-5. PMID 10074448 DOI: 10.1016/S0960-9822(99)80106-7  0.494
1999 La Rocca P, Shai Y, Sansom MS. Peptide-bilayer interactions: simulations of dermaseptin B, an antimicrobial peptide. Biophysical Chemistry. 76: 145-59. PMID 10063609 DOI: 10.1016/S0301-4622(98)00232-4  0.333
1999 Tieleman DP, Sansom MS, Berendsen HJ. Alamethicin helices in a bilayer and in solution: molecular dynamics simulations. Biophysical Journal. 76: 40-9. PMID 9876121 DOI: 10.1016/S0006-3495(99)77176-6  0.47
1998 Tieleman DP, Breed J, Berendsen HJ, Sansom MS. Alamethicin channels in a membrane: molecular dynamics simulations. Faraday Discussions. 209-23; discussion 2. PMID 10822611 DOI: 10.1039/A806266H  0.565
1998 Smart OS, Coates GM, Sansom MS, Alder GM, Bashford CL. Structure-based prediction of the conductance properties of ion channels. Faraday Discussions. 185-99; discussion 2. PMID 10822609 DOI: 10.1039/A806771F  0.373
1998 Sansom MS, Forrest LR, Bull R. Viral ion channels: molecular modeling and simulation. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 20: 992-1000. PMID 10048299 DOI: 10.1002/(Sici)1521-1878(199812)20:12<992::Aid-Bies5>3.0.Co;2-7  0.724
1998 Tieleman DP, Forrest LR, Sansom MS, Berendsen HJ. Lipid properties and the orientation of aromatic residues in OmpF, influenza M2, and alamethicin systems: molecular dynamics simulations. Biochemistry. 37: 17554-61. PMID 9860871 DOI: 10.1021/Bi981802Y  0.648
1998 Smith GR, Sansom MS. Dynamic properties of Na+ ions in models of ion channels: a molecular dynamics study. Biophysical Journal. 75: 2767-82. PMID 9826599 DOI: 10.1016/S0006-3495(98)77720-3  0.483
1998 Gazit E, La Rocca P, Sansom MS, Shai Y. The structure and organization within the membrane of the helices composing the pore-forming domain of Bacillus thuringiensis delta-endotoxin are consistent with an "umbrella-like" structure of the pore. Proceedings of the National Academy of Sciences of the United States of America. 95: 12289-94. PMID 9770479 DOI: 10.1073/Pnas.95.21.12289  0.431
1998 Ranatunga KM, Kerr ID, Adcock CA, Smith GR, Sansom MS. Molecular dynamics of ion/channel interactions. Biochemical Society Transactions. 26: S301. PMID 9766020 DOI: 10.1042/Bst026S301  0.461
1998 Adcock C, Smith GR, Sansom MS. Electrostatics of ligand-gated ion channels. Biochemical Society Transactions. 26: S300. PMID 9766019 DOI: 10.1042/Bst026S300  0.433
1998 Smith GR, Sansom MS. Dynamic properties of ions in models of ion channels studied by molecular dynamics simulation. Biochemical Society Transactions. 26: S195. PMID 9765914 DOI: 10.1042/Bst026S195  0.44
1998 Sansom MS, Tieleman DP, Forrest LR, Berendsen HJ. Molecular dynamics simulations of membranes with embedded proteins and peptides: porin, alamethicin and influenza virus M2. Biochemical Society Transactions. 26: 438-43. PMID 9765893 DOI: 10.1042/Bst0260438  0.627
1998 Adcock C, Smith GR, Sansom MS. Electrostatics and the ion selectivity of ligand-gated channels. Biophysical Journal. 75: 1211-22. PMID 9726923 DOI: 10.1016/S0006-3495(98)74040-8  0.432
1998 Buckingham SD, Adcock C, Sansom MS, Sattelle DB, Baylis HA. Functional characterization of a mutated chicken alpha7 nicotinic acetylcholine receptor subunit with a leucine residue inserted in transmembrane domain 2. British Journal of Pharmacology. 124: 747-55. PMID 9690867 DOI: 10.1038/Sj.Bjp.0701866  0.338
1998 Sansom MS. Ion channels: a first view of K+ channels in atomic glory. Current Biology : Cb. 8: R450-2. PMID 9651671 DOI: 10.1016/S0960-9822(98)70290-8  0.457
1998 Sansom MS. Models and simulations of ion channels and related membrane proteins. Current Opinion in Structural Biology. 8: 237-44. PMID 9631299 DOI: 10.1016/S0959-440X(98)80045-6  0.476
1998 Sansom MS, Adcock C, Smith GR. Modelling and simulation of ion channels: applications to the nicotinic acetylcholine receptor. Journal of Structural Biology. 121: 246-62. PMID 9615441 DOI: 10.1006/Jsbi.1997.3950  0.51
1998 Ranatunga KM, Kerr ID, Adcock C, Smith GR, Sansom MS. Protein-water-ion interactions in a model of the pore domain of a potassium channel: a simulation study. Biochimica Et Biophysica Acta. 1370: 1-7. PMID 9518528 DOI: 10.1016/S0005-2736(97)00271-X  0.518
1998 Breed J, Kerr ID, Molle G, Duclohier H, Sansom MS. Ion channel stability and hydrogen bonding. Molecular modelling of channels formed by synthetic alamethicin analogues. Biochimica Et Biophysica Acta. 1330: 103-9. PMID 9408161 DOI: 10.1016/S0005-2736(97)00163-6  0.493
1997 Sansom MS, Smith GR, Smart OS, Smith SO. Channels formed by the transmembrane helix of phospholamban: a simulation study. Biophysical Chemistry. 69: 269-81. PMID 9474759 DOI: 10.1016/S0301-4622(97)00109-9  0.517
1997 Adcock C, Smith GR, Sansom MS. Molecular modelling and electrostatic properties of the pore domain of ligand-gated receptors. Biochemical Society Transactions. 25: 549S. PMID 9388763 DOI: 10.1042/Bst025549S  0.358
1997 Smith GR, Sansom MS. Molecular dynamics study of water and Na+ ions in models of the pore region of the nicotinic acetylcholine receptor. Biochemical Society Transactions. 25: 548S. PMID 9388762 DOI: 10.1042/Bst025548S  0.36
1997 Jaikaran DC, Biggin PC, Wenschuh H, Sansom MS, Woolley GA. Structure-function relationships in helix-bundle channels probed via total chemical synthesis of alamethicin dimers: effects of a Gln7 to Asn7 mutation. Biochemistry. 36: 13873-81. PMID 9374865 DOI: 10.1021/Bi9716130  0.514
1997 Sansom MS, Smith GR, Adcock C, Biggin PC. The dielectric properties of water within model transbilayer pores. Biophysical Journal. 73: 2404-15. PMID 9370434 DOI: 10.1016/S0006-3495(97)78269-9  0.411
1997 Smith GR, Sansom MS. Molecular dynamics study of water and Na+ ions in models of the pore region of the nicotinic acetylcholine receptor. Biophysical Journal. 73: 1364-81. PMID 9284304 DOI: 10.1016/S0006-3495(97)78169-4  0.514
1997 Woolley GA, Biggin PC, Schultz A, Lien L, Jaikaran DC, Breed J, Crowhurst K, Sansom MS. Intrinsic rectification of ion flux in alamethicin channels: studies with an alamethicin dimer. Biophysical Journal. 73: 770-8. PMID 9251793 DOI: 10.1016/S0006-3495(97)78109-8  0.456
1997 Kerr ID, Sansom MS. The pore-lining region of shaker voltage-gated potassium channels: comparison of beta-barrel and alpha-helix bundle models. Biophysical Journal. 73: 581-602. PMID 9251779 DOI: 10.1016/S0006-3495(97)78095-0  0.449
1997 Sansom MS, Kerr ID, Smith GR, Son HS. The influenza A virus M2 channel: a molecular modeling and simulation study. Virology. 233: 163-73. PMID 9201226 DOI: 10.1006/Viro.1997.8578  0.45
1997 Breed J, Biggin PC, Kerr ID, Smart OS, Sansom MS. Alamethicin channels - modelling via restrained molecular dynamics simulations. Biochimica Et Biophysica Acta. 1325: 235-49. PMID 9168149 DOI: 10.1016/S0005-2736(96)00262-3  0.489
1997 Smart OS, Breed J, Smith GR, Sansom MS. A novel method for structure-based prediction of ion channel conductance properties. Biophysical Journal. 72: 1109-26. PMID 9138559 DOI: 10.1016/S0006-3495(97)78760-5  0.436
1997 Grice AL, Kerr ID, Sansom MS. Ion channels formed by HIV-1 Vpu: a modelling and simulation study. Febs Letters. 405: 299-304. PMID 9108308 DOI: 10.1016/S0014-5793(97)00198-1  0.522
1997 Biggin PC, Breed J, Son HS, Sansom MS. Simulation studies of alamethicin-bilayer interactions. Biophysical Journal. 72: 627-36. PMID 9017192 DOI: 10.1016/S0006-3495(97)78701-0  0.533
1997 Sansom MS. Structure of a molecular hole-punch. Nature. 385: 390-1. PMID 9009183 DOI: 10.1038/385390A0  0.301
1997 Kerr ID, Doak DG, Sankararamakrishnan R, Breed J, Sansom MS. Molecular modelling of Staphylococcal delta-toxin ion channels by restrained molecular dynamics. Protein Engineering. 9: 161-71. PMID 9005437 DOI: 10.1093/Protein/9.2.161  0.769
1997 Sankararamakrishnan R, Adcock C, Sansom MS. The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics. Biophysical Journal. 71: 1659-71. PMID 8889144 DOI: 10.1016/S0006-3495(96)79370-0  0.677
1996 Smart OS, Neduvelil JG, Wang X, Wallace BA, Sansom MS. HOLE: a program for the analysis of the pore dimensions of ion channel structural models. Journal of Molecular Graphics. 14: 354-60, 376. PMID 9195488 DOI: 10.1016/S0263-7855(97)00009-X  0.477
1996 Kerr ID, Son HS, Sankararamakrishnan R, Sansom MS. Molecular dynamics simulations of isolated transmembrane helices of potassium channels. Biopolymers. 39: 503-15. PMID 8837517 DOI: 10.1002/(Sici)1097-0282(199610)39:4<503::Aid-Bip3>3.0.Co;2-0  0.739
1996 Breed J, Sankararamakrishnan R, Kerr ID, Sansom MS. Molecular dynamics simulations of water within models of ion channels. Biophysical Journal. 70: 1643-61. PMID 8785323 DOI: 10.1016/S0006-3495(96)79727-8  0.719
1996 Kerr ID, Sansom MS. Molecular modelling of the pore of potassium channels by restraints-directed distance geometry. Biochemical Society Transactions. 24: 297S. PMID 8736955 DOI: 10.1042/Bst024297S  0.468
1996 Biggin PC, Sansom MS. Simulation of voltage-dependent interactions of alpha-helical peptides with lipid bilayers. Biophysical Chemistry. 60: 99-110. PMID 8679929 DOI: 10.1016/0301-4622(96)00015-4  0.409
1996 Son HS, Sansom MS. Simulation of the packing of transmembrane alpha-helices. Biochemical Society Transactions. 24: 140S. PMID 8674631 DOI: 10.1042/Bst024140S  0.401
1996 Sankararamakrishnan R, Sansom MS. Molecular dynamics simulations on solvated M2 helix bundles of nicotinic receptors. Biochemical Society Transactions. 24: 138S. PMID 8674628 DOI: 10.1042/Bst024138S  0.729
1996 Biggin PC, Sansom MS. Simulation of voltage-dependent insertion of alpha-helical peptides into lipid bilayers. Biochemical Society Transactions. 24: 137S. PMID 8674627 DOI: 10.1042/Bst024137S  0.35
1996 You S, Peng S, Lien L, Breed J, Sansom MS, Woolley GA. Engineering stabilized ion channels: covalent dimers of alamethicin. Biochemistry. 35: 6225-32. PMID 8639562 DOI: 10.1021/Bi9529216  0.442
1996 Gazit E, Miller IR, Biggin PC, Sansom MS, Shai Y. Structure and orientation of the mammalian antibacterial peptide cecropin P1 within phospholipid membranes. Journal of Molecular Biology. 258: 860-70. PMID 8637016 DOI: 10.1006/Jmbi.1996.0293  0.405
1996 Kerr ID, Sansom MS. Sequence analysis and molecular dynamics studies of potassium channel transmembrane helices. Biochemical Society Transactions. 23: 415S. PMID 8566303 DOI: 10.1042/Bst023415S  0.455
1996 Sankararamakrishnan R, Sansom MS. Water-mediated conformational transitions in nicotinic receptor M2 helix bundles: a molecular dynamics study. Febs Letters. 377: 377-82. PMID 8549759 DOI: 10.1016/0014-5793(95)01376-8  0.699
1996 Sankararamakrishnan R, Sansom MS. Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices. Biochimica Et Biophysica Acta. 1239: 122-32. PMID 7488617 DOI: 10.1016/0005-2736(95)00165-Y  0.681
1995 Breed J, Kerr ID, Sankararamakrishnan R, Sansom MS. Packing interactions of Aib-containing helices: molecular modeling of parallel dimers of simple hydrophobic helices and of alamethicin. Biopolymers. 35: 639-55. PMID 7766829 DOI: 10.1002/Bip.360350610  0.704
1995 Sansom MS. Ion-channel gating. Twist to open. Current Biology : Cb. 5: 373-5. PMID 7627551 DOI: 10.1016/S0960-9822(95)00076-5  0.455
1995 Sankararamakrishnan R, Sansom MS. Structural features of isolated M2 helices of nicotinic receptors. Simulated annealing via molecular dynamics studies. Biophysical Chemistry. 55: 215-30. PMID 7626742 DOI: 10.1016/0301-4622(95)00006-J  0.702
1995 Sansom MS. The fine art of pore formation. Nature Structural Biology. 1: 563-7. PMID 7543361 DOI: 10.1038/Nsb0994-563  0.444
1995 Kerr ID, Dufourcq J, Rice JA, Fredkin DR, Sansom MS. Ion channel formation by synthetic analogues of staphylococcal delta-toxin. Biochimica Et Biophysica Acta. 1236: 219-27. PMID 7540870 DOI: 10.1016/0005-2736(95)00051-4  0.499
1994 Haris PI, Ramesh B, Sansom MS, Kerr ID, Srai KS, Chapman D. Studies of the pore-forming domain of a voltage-gated potassium channel protein. Protein Engineering. 7: 255-62. PMID 8170928 DOI: 10.1093/Protein/7.2.255  0.483
1994 Kerr ID, Sankararamakrishnan R, Sansom MS. Simplified models of the pore domain of the nicotinic acetylcholine receptor. Biochemical Society Transactions. 22: 158S. PMID 7958226 DOI: 10.1042/Bst022158S  0.638
1994 Breed J, Sansom MS. Alamethicin channels modelled by simulated annealing and molecular dynamics. Biochemical Society Transactions. 22: 157S. PMID 7958225 DOI: 10.1042/Bst022157S  0.468
1994 Sankararamakrishnan R, Sansom MS. Molecular dynamics studies of M2 helices of nicotinic acetylcholine receptors. Biochemical Society Transactions. 22: 156S. PMID 7958224 DOI: 10.1042/Bst022156S  0.643
1994 Kerr ID, Sankararamakrishnan R, Smart OS, Sansom MS. Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics. Biophysical Journal. 67: 1501-15. PMID 7529585 DOI: 10.1016/S0006-3495(94)80624-1  0.717
1994 Gazit E, Bach D, Kerr ID, Sansom MS, Chejanovsky N, Shai Y. The alpha-5 segment of Bacillus thuringiensis delta-endotoxin: in vitro activity, ion channel formation and molecular modelling. The Biochemical Journal. 304: 895-902. PMID 7529493 DOI: 10.1042/Bj3040895  0.406
1994 Ball FG, Davies SS, Sansom MS. Ion channel gating and time interval omission: statistical inference for a two-state Markov model. Proceedings. Biological Sciences. 255: 267-72. PMID 7517564 DOI: 10.1098/Rspb.1994.0038  0.406
1994 Woolley GA, Epand RM, Kerr ID, Sansom MS, Wallace BA. Alamethicin pyromellitate: an ion-activated channel-forming peptide. Biochemistry. 33: 6850-8. PMID 7515685 DOI: 10.1021/Bi00188A014  0.445
1994 Kerr ID, Sansom MS. Hydrophilic surface maps of channel-forming peptides: analysis of amphipathic helices. European Biophysics Journal : Ebj. 22: 269-77. PMID 7504619 DOI: 10.1007/Bf00180261  0.454
1993 Sansom MS. Alamethicin and related peptaibols--model ion channels. European Biophysics Journal : Ebj. 22: 105-24. PMID 7689461 DOI: 10.1007/Bf00196915  0.565
1993 Ball FG, Yeo GF, Milne RK, Edeson RO, Madsen BW, Sansom MS. Single ion channel models incorporating aggregation and time interval omission. Biophysical Journal. 64: 357-74. PMID 7681333 DOI: 10.1016/S0006-3495(93)81375-4  0.359
1993 Sansom MS, Balaram P, Karle IL. Ion channel formation by zervamicin-IIB. A molecular modelling study. European Biophysics Journal : Ebj. 21: 369-83. PMID 7680608 DOI: 10.1007/Bf00185864  0.52
1993 Ball FG, Chen A, Sansom MS. Poisson sampling-based inference for single ion channel data with time interval omission. Proceedings. Biological Sciences. 250: 263-9. PMID 1283638 DOI: 10.1098/Rspb.1992.0158  0.458
1993 Kerr ID, Sansom MS. Hydrophilic surface maps of channel-forming peptides. Biochemical Society Transactions. 20: 323S. PMID 1283131 DOI: 10.1042/Bst020323S  0.353
1992 Sansom MS, Kerr ID, Mellor IR. Ion channels formed by amphipathic helical peptides. A molecular modelling study. European Biophysics Journal : Ebj. 20: 229-40. PMID 1725513 DOI: 10.1007/Bf00183460  0.516
1992 Sansom MS. The roles of serine and threonine sidechains in ion channels: a modelling study. European Biophysics Journal : Ebj. 21: 281-98. PMID 1385107 DOI: 10.1007/Bf00185123  0.456
1992 Balaram P, Krishna K, Sukumar M, Mellor IR, Sansom MS. The properties of ion channels formed by zervamicins. European Biophysics Journal : Ebj. 21: 117-28. PMID 1382967 DOI: 10.1007/Bf00185426  0.493
1992 Agarwalla S, Mellor IR, Sansom MS, Karle IL, Flippen-Anderson JL, Uma K, Krishna K, Sukumar M, Balaram P. Zervamicins, a structurally characterised peptide model for membrane ion channels. Biochemical and Biophysical Research Communications. 186: 8-15. PMID 1378732 DOI: 10.1016/S0006-291X(05)80768-5  0.515
1992 Sansom MS. Proline residues in transmembrane helices of channel and transport proteins: a molecular modelling study. Protein Engineering. 5: 53-60. PMID 1378612 DOI: 10.1093/Protein/5.1.53  0.494
1991 Ball FG, Davies SS, Sansom MS. Single-channel data and missed events: analysis of a two-state Markov model. Proceedings. Biological Sciences. 242: 61-7. PMID 1704138 DOI: 10.1098/Rspb.1990.0104  0.432
1990 Sansom MS, Usherwood PN. Single-channel studies of glutamate receptors. International Review of Neurobiology. 32: 51-106. PMID 1981887 DOI: 10.1016/S0074-7742(08)60580-2  0.328
1990 Bates SE, Sansom MS, Ball FG, Ramsey RL, Usherwood PN. Glutamate receptor-channel gating. Maximum likelihood analysis of gigaohm seal recordings from locust muscle. Biophysical Journal. 58: 219-29. PMID 1696510 DOI: 10.1016/S0006-3495(90)82367-5  0.447
1990 Mellor IR, Sansom MS. Ion-channel properties of mastoparan, a 14-residue peptide from wasp venom, and of MP3, a 12-residue analogue. Proceedings of the Royal Society of London. Series B, Biological Sciences. 239: 383-400. PMID 1694295 DOI: 10.1098/Rspb.1990.0022  0.488
1990 Sansom M, Mellor I. Analysis of the gating of single ion channels using current-voltage surfaces Journal of Theoretical Biology. 144: 213-223. DOI: 10.1016/S0022-5193(05)80321-2  0.45
1989 Sansom MS, Ball FG, Kerry CJ, McGee R, Ramsey RL, Usherwood PN. Markov, fractal, diffusion, and related models of ion channel gating. A comparison with experimental data from two ion channels. Biophysical Journal. 56: 1229-43. PMID 2482085 DOI: 10.1016/S0006-3495(89)82770-5  0.469
1989 Ball FG, Sansom MS. Ion-channel gating mechanisms: model identification and parameter estimation from single channel recordings. Proceedings of the Royal Society of London. Series B, Biological Sciences. 236: 385-416. PMID 2471982 DOI: 10.1098/Rspb.1989.0029  0.444
1989 Ball FG, McGee R, Sansom MS. Analysis of post-perturbation gating kinetics of single ion channels. Proceedings of the Royal Society of London. Series B, Biological Sciences. 236: 29-52. PMID 2469083 DOI: 10.1098/Rspb.1989.0011  0.454
1988 Kerry CJ, Ramsey RL, Sansom MS, Usherwood PN. Glutamate receptor channel kinetics: the effect of glutamate concentration. Biophysical Journal. 53: 39-52. PMID 19431716 DOI: 10.1016/S0006-3495(88)83064-9  0.409
1988 Ball FG, Kerry CJ, Ramsey RL, Sansom MS, Usherwood PN. The use of dwell time cross-correlation functions to study single-ion channel gating kinetics. Biophysical Journal. 54: 309-20. PMID 2462924 DOI: 10.1016/S0006-3495(88)82961-8  0.43
1988 Kerry CJ, Ramsey RL, Sansom MS, Usherwood PN. Single channel studies of non-competitive antagonism of a quisqualate-sensitive glutamate receptor by argiotoxin636--a fraction isolated from orb-web spider venom. Brain Research. 459: 312-27. PMID 2460188 DOI: 10.1016/0006-8993(88)90647-6  0.428
1988 Ball F, Sansom M. Temporal clustering of ion channel openings incorporating time interval omission. Ima Journal of Mathematics Applied in Medicine and Biology. 4: 333-61. PMID 2459274 DOI: 10.1093/Imammb/4.4.333  0.382
1988 McGee R, Sansom MS, Usherwood PN. Characterization of a delayed rectifier K+ channel in NG108-15 neuroblastoma X glioma cells: gating kinetics and the effects of enrichment of membrane phospholipids with arachidonic acid. The Journal of Membrane Biology. 102: 21-34. PMID 2456394 DOI: 10.1007/Bf01875350  0.45
1988 Mellor IR, Thomas DH, Sansom MS. Properties of ion channels formed by Staphylococcus aureus delta-toxin. Biochimica Et Biophysica Acta. 942: 280-94. PMID 2456097 DOI: 10.1016/0005-2736(88)90030-2  0.496
1988 Ball FG, Sansom MS. Single-channel autocorrelation functions: the effects of time interval omission. Biophysical Journal. 53: 819-32. PMID 2455553 DOI: 10.1016/S0006-3495(88)83161-8  0.405
1987 Kerry CJ, Kits KS, Ramsey RL, Sansom MS, Usherwood PN. Single channel kinetics of a glutamate receptor. Biophysical Journal. 51: 137-44. PMID 2436676 DOI: 10.1016/S0006-3495(87)83318-0  0.449
1986 Kerry CJ, Kits KS, Ramsey RL, Sansom MS, Usherwood PN. Single channel kinetics of a glutamate receptor. Biophysical Journal. 50: 367-74. PMID 19431683 DOI: 10.1016/s0006-3495(86)83470-1  0.341
1985 Sansom M, Stuart D, Acharya K, Hajdu J, McLaughlin P, Johnson L. Glycogen phosphorylase b — the molecular anatomy of a large regulatory enzyme Journal of Molecular Structure: Theochem. 123: 3-25. DOI: 10.1016/0166-1280(85)85181-2  0.652
1984 Lorek A, Wilson KS, Sansom MS, Stuart DI, Stura EA, Jenkins JA, Zanotti G, Hajdu J, Johnson LN. Allosteric interactions of glycogen phosphorylase b. A crystallographic study of glucose 6-phosphate and inorganic phosphate binding to di-imidate-cross-linked phosphorylase b. The Biochemical Journal. 218: 45-60. PMID 6424657 DOI: 10.1042/Bj2180045  0.609
1983 Stura EA, Zanotti G, Babu YS, Sansom MS, Stuart DI, Wilson KS, Johnson LN, Van de Werve G. Comparison of AMP and NADH binding to glycogen phosphorylase b. Journal of Molecular Biology. 170: 529-65. PMID 6415289 DOI: 10.1016/S0022-2836(83)80160-0  0.524
1980 Johnson LN, Stura EA, Wilson KS, Sansom MS, Weber IT. Nucleotide binding to glycogen phosphorylase b in the crystal. Journal of Molecular Biology. 134: 639-53. PMID 119868 DOI: 10.1016/0022-2836(79)90371-1  0.491
Low-probability matches (unlikely to be authored by this person)
2018 Baaden M, Barboiu M, Bill RM, Casanova S, Chen CL, Conner M, Freger V, Gong B, Góra A, Hinds B, Horner A, Hummer G, Kumar M, Lokesh M, Mitra S, ... ... Sansom M, et al. Structure and function of natural proteins for water transport: general discussion. Faraday Discussions. PMID 30215655 DOI: 10.1039/C8Fd90019A  0.299
2010 Taylor A, Sansom MS. Studies on viral fusion peptides: the distribution of lipophilic and electrostatic potential over the peptide determines the angle of insertion into a membrane. European Biophysics Journal : Ebj. 39: 1537-45. PMID 20499059 DOI: 10.1007/S00249-010-0611-1  0.298
1991 Sansom MS. The biophysics of peptide models of ion channels. Progress in Biophysics and Molecular Biology. 55: 139-235. PMID 1715999 DOI: 10.1016/0079-6107(91)90004-C  0.296
2001 Sansom MS, Biggin PC. Water at the nanoscale. Nature. 414: 156-9. PMID 11700536 DOI: 10.1038/35102651  0.295
2022 Johansen NT, Bonaccorsi M, Bengtsen T, Larsen AH, Tidemand FG, Pedersen MC, Huda P, Berndtsson J, Darwish T, Yepuri NR, Martel A, Pomorski TG, Bertarello A, Sansom M, Rapp M, et al. Mg-dependent conformational equilibria in CorA and an integrated view on transport regulation. Elife. 11. PMID 35129435 DOI: 10.7554/eLife.71887  0.289
2005 Buckingham SD, Pym L, Jones AK, Brown L, Sansom MS, Sattelle DB, Biggin PC. A7DB: a relational database for mutational, physiological and pharmacological data related to the alpha7 nicotinic acetylcholine receptor. Bmc Neuroscience. 6: 2. PMID 15661073 DOI: 10.1186/1471-2202-6-2  0.286
1999 La Rocca P, Biggin PC, Tieleman DP, Sansom MS. Simulation studies of the interaction of antimicrobial peptides and lipid bilayers. Biochimica Et Biophysica Acta. 1462: 185-200. PMID 10590308 DOI: 10.1016/S0005-2736(99)00206-0  0.285
2014 Sansom MS. Iain Campbell — a personal recollection. Structure (London, England : 1993). 22: 507-8. PMID 24918233 DOI: 10.1016/J.Str.2014.03.009  0.284
2015 Shorthouse D, Gallagher T, Sansom M. Novel Methodologies for the Computational Study of Protein Aggregation Biophysical Journal. 108: 495a. DOI: 10.1016/J.Bpj.2014.11.2709  0.282
2007 Wallace J, Sansom M. Carbon nanotube/detergent interactions via coarse-grained molecular dynamics Chemistry and Physics of Lipids. 149. DOI: 10.1016/J.Chemphyslip.2007.06.205  0.275
2015 Mokrab Y, Bennett A, Sansom MS, Ramsey IS. An Experimentally-Validated Model Structure of the Hv1 Proton Channel Voltage Sensor in its Resting State Biophysical Journal. 108: 424a. DOI: 10.1016/J.BPJ.2014.11.2322  0.275
2010 Wallace EJ, D'Rozario RS, Sanchez BM, Sansom MS. A multiscale simulation study of carbon nanotube interactions with designed amphiphilic peptide helices. Nanoscale. 2: 967-75. PMID 20648294 DOI: 10.1039/B9Nr00355J  0.272
2012 Lindau M, Hall BA, Chetwynd A, Beckstein O, Sansom MS. Coarse Grain Simulations Reveal Movement of Synaptobrevin C Terminus in Response to Piconewton Forces Suggesting a Novel Fusion Pore Mechanism Biophysical Journal. 102: 318a. DOI: 10.1016/J.Bpj.2011.11.1747  0.27
2009 Wallace EJ, D'Rozario RS, Mendoza B, Sansom MS. A Simulation Study of Carbon Nanotube Interactions with Designed Amphiphilic Peptides Biophysical Journal. 96: 52a. DOI: 10.1016/J.Bpj.2008.12.167  0.265
2003 Faraldo-Gómez JD, Sansom MS. Acquisition of siderophores in gram-negative bacteria. Nature Reviews. Molecular Cell Biology. 4: 105-16. PMID 12563288 DOI: 10.1038/Nrm1015  0.263
2005 Sansom MS. Acetylcholine receptors: peering down a pore. Current Biology : Cb. 3: 240-1. PMID 15335777 DOI: 10.1016/0960-9822(93)90344-N  0.26
2003 Smith MD, Claridge TD, Sansom MS, Fleet GW. Bend ribbon-forming tetrahydrofuran amino acids. Organic & Biomolecular Chemistry. 1: 3647-55. PMID 14649895 DOI: 10.1039/B307707C  0.257
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