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Jordi Paps, Ph.D. - Publications

Affiliations: 
2001-2008 Department of Genetics Universitat de Barcelona, Barcelona, Cataluña, Spain 
 2009-2010 Parc Cientific de Barcelona, University of Barcelona 
 2010-2015 Department of Zoology University of Oxford, Oxford, United Kingdom 
 2015-2018 School of Biological Sciences University of Essex (United Kingdom) 
 2019- School of Biological Sciences University of Bristol, Bristol, England, United Kingdom 
Area:
Evolution, Comparative genomics, phylogenetics, Animal Kingdom, Metazoa
Website:
https://evolution-genome.com/
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, ... ... Paps J, et al. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution. PMID 38216617 DOI: 10.1038/s41559-023-02299-z  0.72
2020 Almudi I, Vizueta J, Wyatt CDR, de Mendoza A, Marlétaz F, Firbas PN, Feuda R, Masiero G, Medina P, Alcaina-Caro A, Cruz F, Gómez-Garrido J, Gut M, Alioto TS, Vargas-Chavez C, ... ... Paps J, et al. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings. Nature Communications. 11: 2631. PMID 32457347 DOI: 10.1038/S41467-020-16284-8  0.801
2020 Guijarro-Clarke C, Holland PWH, Paps J. Publisher Correction: Widespread patterns of gene loss in the evolution of the animal kingdom. Nature Ecology & Evolution. PMID 32108759 DOI: 10.1038/S41559-020-1159-9  0.395
2020 Guijarro-Clarke C, Holland PWH, Paps J. Widespread patterns of gene loss in the evolution of the animal kingdom. Nature Ecology & Evolution. PMID 32094540 DOI: 10.1038/S41559-020-1129-2  0.52
2019 Bowles AMC, Bechtold U, Paps J. The Origin of Land Plants Is Rooted in Two Bursts of Genomic Novelty. Current Biology : Cb. PMID 31956023 DOI: 10.1016/J.Cub.2019.11.090  0.369
2018 López-Escardó D, Paps J, de Vargas C, Massana R, Ruiz-Trillo I, Del Campo J. Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity. Scientific Reports. 8: 9106. PMID 29904074 DOI: 10.1038/S41598-018-27509-8  0.779
2018 Paps J. What makes an animal? The molecular quest for the origin of the Animal Kingdom. Integrative and Comparative Biology. PMID 29846592 DOI: 10.1093/Icb/Icy036  0.528
2018 Paps J, Holland PWH. Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty. Nature Communications. 9: 1730. PMID 29712911 DOI: 10.1038/S41467-018-04136-5  0.446
2018 Pascual-Anaya J, Sato I, Sugahara F, Higuchi S, Paps J, Ren Y, Takagi W, Ruiz-Villalba A, Ota KG, Wang W, Kuratani S. Hagfish and lamprey Hox genes reveal conservation of temporal colinearity in vertebrates. Nature Ecology & Evolution. PMID 29610468 DOI: 10.1038/S41559-018-0526-2  0.455
2017 Dunwell TL, Paps J, Holland PWH. Novel and divergent genes in the evolution of placental mammals. Proceedings. Biological Sciences. 284. PMID 28978728 DOI: 10.1098/Rspb.2017.1357  0.564
2017 Holland PW, Marlétaz F, Maeso I, Dunwell TL, Paps J. New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994121 DOI: 10.1098/Rstb.2015.0480  0.808
2015 Jékely G, Paps J, Nielsen C. The phylogenetic position of ctenophores and the origin(s) of nervous systems. Evodevo. 6: 1. PMID 25905000 DOI: 10.1186/2041-9139-6-1  0.407
2015 Kenny NJ, Sin YW, Hayward A, Paps J, Chu KH, Hui JH. The phylogenetic utility and functional constraint of microRNA flanking sequences. Proceedings. Biological Sciences / the Royal Society. 282: 20142983. PMID 25694624 DOI: 10.1098/Rspb.2014.2983  0.426
2015 Paps J, Xu F, Zhang G, Holland PW. Reinforcing the egg-timer: recruitment of novel lophotrochozoa homeobox genes to early and late development in the pacific oyster. Genome Biology and Evolution. 7: 677-88. PMID 25631164 DOI: 10.1093/Gbe/Evv018  0.697
2015 Ruiz-Trillo I, Paps J. Acoelomorpha: earliest branching bilaterians or deuterostomes? Organisms Diversity & Evolution. 16: 391-399. DOI: 10.1007/S13127-015-0239-1  0.768
2014 Scotti JS, Leung IK, Ge W, Bentley MA, Paps J, Kramer HB, Lee J, Aik W, Choi H, Paulsen SM, Bowman LA, Loik ND, Horita S, Ho CH, Kershaw NJ, et al. Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation. Proceedings of the National Academy of Sciences of the United States of America. 111: 13331-6. PMID 25197067 DOI: 10.1073/Pnas.1409916111  0.303
2014 Marlétaz F, Paps J, Maeso I, Holland PW. Discovery and classification of homeobox genes in animal genomes. Methods in Molecular Biology (Clifton, N.J.). 1196: 3-18. PMID 25151154 DOI: 10.1007/978-1-4939-1242-1_1  0.791
2014 Ludeman DA, Farrar N, Riesgo A, Paps J, Leys SP. Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges. Bmc Evolutionary Biology. 14: 3. PMID 24410880 DOI: 10.1186/1471-2148-14-3  0.328
2013 Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sanchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai J, Camicia F, ... ... Paps J, et al. The genomes of four tapeworm species reveal adaptations to parasitism. Nature. 496: 57-63. PMID 23485966 DOI: 10.1038/Nature12031  0.635
2013 Paps J, Medina-Chacón LA, Marshall W, Suga H, Ruiz-Trillo I. Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts. Protist. 164: 2-12. PMID 23083534 DOI: 10.1016/J.Protis.2012.09.002  0.834
2012 Zhang G, Fang X, Guo X, Li L, Luo R, Xu F, Yang P, Zhang L, Wang X, Qi H, Xiong Z, Que H, Xie Y, Holland PW, Paps J, et al. The oyster genome reveals stress adaptation and complexity of shell formation. Nature. 490: 49-54. PMID 22992520 DOI: 10.1038/Nature11413  0.631
2012 Riutort M, Álvarez-Presas M, Lázaro E, Solà E, Paps J. Evolutionary history of the Tricladida and the Platyhelminthes: an up-to-date phylogenetic and systematic account. The International Journal of Developmental Biology. 56: 5-17. PMID 22450992 DOI: 10.1387/Ijdb.113441Mr  0.804
2012 Paps J, Holland PW, Shimeld SM. A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus? Briefings in Functional Genomics. 11: 177-86. PMID 22441554 DOI: 10.1093/Bfgp/Els012  0.672
2012 Paps J, Riutort M. Molecular phylogeny of the phylum Gastrotricha: new data brings together molecules and morphology. Molecular Phylogenetics and Evolution. 63: 208-12. PMID 22198640 DOI: 10.1016/J.Ympev.2011.12.010  0.816
2012 Torruella G, Derelle R, Paps J, Lang BF, Roger AJ, Shalchian-Tabrizi K, Ruiz-Trillo I. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution. 29: 531-44. PMID 21771718 DOI: 10.1093/Molbev/Msr185  0.775
2009 Paps J, Baguñà J, Riutort M. Bilaterian phylogeny: a broad sampling of 13 nuclear genes provides a new Lophotrochozoa phylogeny and supports a paraphyletic basal acoelomorpha. Molecular Biology and Evolution. 26: 2397-406. PMID 19602542 DOI: 10.1093/Molbev/Msp150  0.814
2009 Paps J, Baguñà J, Riutort M. Lophotrochozoa internal phylogeny: new insights from an up-to-date analysis of nuclear ribosomal genes. Proceedings. Biological Sciences. 276: 1245-54. PMID 19129141 DOI: 10.1098/Rspb.2008.1574  0.808
2008 Baguñà J, Martinez P, Paps J, Riutort M. Back in time: a new systematic proposal for the Bilateria. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 1481-91. PMID 18192186 DOI: 10.1098/Rstb.2007.2238  0.797
2006 Jimenez-Guri E, Paps J, Garcia-Fernandez J, Salo E. Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade. The International Journal of Developmental Biology. 50: 675-9. PMID 17051477 DOI: 10.1387/Ijdb.062167Ej  0.731
2002 Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Baguna J, Riutort M. A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proceedings of the National Academy of Sciences of the United States of America. 99: 11246-51. PMID 12177440 DOI: 10.1073/Pnas.172390199  0.751
2001 Baguñà J, Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Riutort M. The first bilaterian organisms: simple or complex? New molecular evidence The International Journal of Developmental Biology. 45. DOI: 10.1387/Ijdb.01450133  0.781
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