| Year |
Citation |
Score |
| 2020 |
Michel CJ, Mayer C, Poch O, Thompson JD. Characterization of accessory genes in coronavirus genomes. Virology Journal. 17: 131. PMID 32854725 DOI: 10.1186/S12985-020-01402-1 |
0.373 |
|
| 2020 |
Chennen K, Weber T, Lornage X, Kress A, Böhm J, Thompson J, Laporte J, Poch O. MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants. Plos One. 15: e0236962. PMID 32735577 DOI: 10.1371/Journal.Pone.0236962 |
0.333 |
|
| 2020 |
Scalzitti N, Jeannin-Girardon A, Collet P, Poch O, Thompson JD. A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms. Bmc Genomics. 21: 293. PMID 32272892 DOI: 10.1186/S12864-020-6707-9 |
0.378 |
|
| 2019 |
Estrada-Cuzcano A, Etard C, Delvallée C, Stoetzel C, Schaefer E, Scheidecker S, Geoffroy V, Schneider A, Studer F, Mattioli F, Chennen K, Sigaudy S, Plassard D, Poch O, Piton A, et al. Novel IQCE variations confirm its role in postaxial polydactyly and cause ciliary defect phenotype in zebrafish. Human Mutation. PMID 31549751 DOI: 10.1002/Humu.23924 |
0.351 |
|
| 2018 |
Nevers Y, Kress A, Defosset A, Ripp R, Linard B, Thompson JD, Poch O, Lecompte O. OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Research. PMID 30380106 DOI: 10.1093/Nar/Gky1068 |
0.372 |
|
| 2018 |
Dila G, Christian JM, Poch O, Ripp R, Julie DT. Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes. Bio Systems. PMID 30367916 DOI: 10.1016/J.Biosystems.2018.10.014 |
0.369 |
|
| 2018 |
Kress A, Lecompte O, Poch O, Thompson JD. PROBE: analysis and visualization of protein block-level evolution. Bioinformatics (Oxford, England). PMID 29741582 DOI: 10.1093/Bioinformatics/Bty367 |
0.4 |
|
| 2017 |
Michel CJ, Ngoune VN, Poch O, Ripp R, Thompson JD. Enrichment of Circular Code Motifs in the Genes of the Yeast Saccharomyces cerevisiae. Life (Basel, Switzerland). 7. PMID 29207500 DOI: 10.3390/Life7040052 |
0.307 |
|
| 2017 |
Moulinier L, Ripp R, Castillo G, Poch O, Sissler M. MiSynPat: an integrated knowledge base linking clinical, genetic, and structural data for disease-causing mutations in human mitochondrial aminoacyl-tRNA synthetases. Human Mutation. PMID 28608363 DOI: 10.1002/Humu.23277 |
0.318 |
|
| 2017 |
Nevers Y, Prasad MK, Poidevin L, Chennen K, Allot A, Kress A, Ripp R, Thompson JD, Dollfus H, Poch O, Lecompte O. Insights into ciliary genes and evolution from multi-level phylogenetic profiling. Molecular Biology and Evolution. PMID 28460059 DOI: 10.1093/Molbev/Msx146 |
0.363 |
|
| 2016 |
Méjécase C, Laurent-Coriat C, Mayer C, Poch O, Mohand-Saïd S, Prévot C, Antonio A, Boyard F, Condroyer C, Michiels C, Blanchard S, Letexier M, Saraiva JP, Sahel JA, Audo I, et al. Identification of a Novel Homozygous Nonsense Mutation Confirms the Implication of GNAT1 in Rod-Cone Dystrophy. Plos One. 11: e0168271. PMID 27977773 DOI: 10.1371/Journal.Pone.0168271 |
0.34 |
|
| 2016 |
Vanhoutreve R, Kress A, Legrand B, Gass H, Poch O, Thompson JD. LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. Bmc Bioinformatics. 17: 271. PMID 27387560 DOI: 10.1186/S12859-016-1146-Y |
0.371 |
|
| 2016 |
Kole C, Berdugo N, Da Silva C, Aït-Ali N, Millet-Puel G, Pagan D, Blond F, Poidevin L, Ripp R, Fontaine V, Wincker P, Zack DJ, Sahel JA, Poch O, Léveillard T. Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells. Plos One. 11: e0150758. PMID 26985665 DOI: 10.1371/Journal.Pone.0150758 |
0.346 |
|
| 2016 |
Krupina K, Kleiss C, Metzger T, Fournane S, Schmucker S, Hofmann K, Fischer B, Paul N, Porter IM, Raffelsberger W, Poch O, Swedlow JR, Brino L, Sumara I. Ubiquitin Receptor Protein UBASH3B Drives Aurora B Recruitment to Mitotic Microtubules. Developmental Cell. 36: 63-78. PMID 26766443 DOI: 10.1016/J.Devcel.2015.12.017 |
0.307 |
|
| 2015 |
Bianchetti L, Tarabay Y, Lecompte O, Stote R, Poch O, Dejaegere A, Viville S. Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes. Bmc Evolutionary Biology. 15: 222. PMID 26459560 DOI: 10.1186/S12862-015-0506-Y |
0.341 |
|
| 2015 |
Romand R, Ripp R, Poidevin L, Boeglin M, Geffers L, Dollé P, Poch O. Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse. Plos One. 10: e0118024. PMID 25706271 DOI: 10.1371/Journal.Pone.0118024 |
0.347 |
|
| 2015 |
Linard B, Allot A, Schneider R, Morel C, Ripp R, Bigler M, Thompson JD, Poch O, Lecompte O. OrthoInspector 2.0: Software and database updates. Bioinformatics (Oxford, England). 31: 447-8. PMID 25273105 DOI: 10.1093/Bioinformatics/Btu642 |
0.318 |
|
| 2014 |
Khenoussi W, Vanhoutrève R, Poch O, Thompson JD. SIBIS: a Bayesian model for inconsistent protein sequence estimation. Bioinformatics (Oxford, England). 30: 2432-9. PMID 24825613 DOI: 10.1093/Bioinformatics/Btu329 |
0.42 |
|
| 2014 |
Bermejo-Das-Neves C, Nguyen HN, Poch O, Thompson JD. A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). Bmc Bioinformatics. 15: 111. PMID 24742296 DOI: 10.1186/1471-2105-15-111 |
0.356 |
|
| 2014 |
Neuillé M, El Shamieh S, Orhan E, Michiels C, Antonio A, Lancelot ME, Condroyer C, Bujakowska K, Poch O, Sahel JA, Audo I, Zeitz C. Lrit3 deficient mouse (nob6): a novel model of complete congenital stationary night blindness (cCSNB). Plos One. 9: e90342. PMID 24598786 DOI: 10.1371/Journal.Pone.0090342 |
0.32 |
|
| 2014 |
Scheidecker S, Etard C, Pierce NW, Geoffroy V, Schaefer E, Muller J, Chennen K, Flori E, Pelletier V, Poch O, Marion V, Stoetzel C, Strähle U, Nachury MV, Dollfus H. Exome sequencing of Bardet-Biedl syndrome patient identifies a null mutation in the BBSome subunit BBIP1 (BBS18). Journal of Medical Genetics. 51: 132-6. PMID 24026985 DOI: 10.1136/Jmedgenet-2013-101785 |
0.371 |
|
| 2014 |
Audo I, Bujakowska K, Orhan E, El Shamieh S, Sennlaub F, Guillonneau X, Antonio A, Michiels C, Lancelot ME, Letexier M, Saraiva JP, Nguyen H, Luu TD, Léveillard T, Poch O, et al. The familial dementia gene revisited: a missense mutation revealed by whole-exome sequencing identifies ITM2B as a candidate gene underlying a novel autosomal dominant retinal dystrophy in a large family. Human Molecular Genetics. 23: 491-501. PMID 24026677 DOI: 10.1093/Hmg/Ddt439 |
0.359 |
|
| 2013 |
Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O. PARSEC: PAtteRn SEarch and Contextualization. Bioinformatics (Oxford, England). 29: 2643-4. PMID 23929031 DOI: 10.1093/Bioinformatics/Btt455 |
0.365 |
|
| 2013 |
Nguyen H, Luu TD, Poch O, Thompson JD. Knowledge discovery in variant databases using inductive logic programming. Bioinformatics and Biology Insights. 7: 119-31. PMID 23589683 DOI: 10.4137/Bbi.S11184 |
0.342 |
|
| 2013 |
Fritsche LG, Chen W, Schu M, Yaspan BL, Yu Y, Thorleifsson G, Zack DJ, Arakawa S, Cipriani V, Ripke S, Igo RP, Buitendijk GH, Sim X, Weeks DE, Guymer RH, ... ... Poch O, et al. Seven new loci associated with age-related macular degeneration. Nature Genetics. 45: 433-9, 439e1-2. PMID 23455636 DOI: 10.1038/Ng.2578 |
0.305 |
|
| 2013 |
Zeitz C, Jacobson SG, Hamel CP, Bujakowska K, Neuillé M, Orhan E, Zanlonghi X, Lancelot ME, Michiels C, Schwartz SB, Bocquet B, Antonio A, Audier C, Letexier M, ... ... Poch O, et al. Whole-exome sequencing identifies LRIT3 mutations as a cause of autosomal-recessive complete congenital stationary night blindness. American Journal of Human Genetics. 92: 67-75. PMID 23246293 DOI: 10.1016/J.Ajhg.2012.10.023 |
0.347 |
|
| 2012 |
Devignes MD, Benabderrahmane S, Smaïl-Tabbone M, Napoli A, Poch O. Functional classification of genes using semantic distance and fuzzy clustering approach: evaluation with reference sets and overlap analysis. International Journal of Computational Biology and Drug Design. 5: 245-60. PMID 23013652 DOI: 10.1504/Ijcbdd.2012.049207 |
0.315 |
|
| 2012 |
Levasseur A, Paganini J, Dainat J, Thompson JD, Poch O, Pontarotti P, Gouret P. The chordate proteome history database. Evolutionary Bioinformatics Online. 8: 437-47. PMID 22904610 DOI: 10.4137/Ebo.S9186 |
0.413 |
|
| 2012 |
De Craene JO, Ripp R, Lecompte O, Thompson JD, Poch O, Friant S. Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism. Bmc Genomics. 13: 297. PMID 22748146 DOI: 10.1186/1471-2164-13-297 |
0.684 |
|
| 2012 |
Anamika K, Gyenis À, Poidevin L, Poch O, Tora L. RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts. Plos One. 7: e38769. PMID 22701709 DOI: 10.1371/Journal.Pone.0038769 |
0.312 |
|
| 2012 |
Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H. KD4v: Comprehensible Knowledge Discovery System for Missense Variant. Nucleic Acids Research. 40: W71-5. PMID 22641855 DOI: 10.1093/Nar/Gks474 |
0.343 |
|
| 2012 |
Luu TD, Rusu AM, Walter V, Ripp R, Moulinier L, Muller J, Toursel T, Thompson JD, Poch O, Nguyen H. MSV3d: database of human MisSense Variants mapped to 3D protein structure. Database : the Journal of Biological Databases and Curation. 2012: bas018. PMID 22491796 DOI: 10.1093/Database/Bas018 |
0.368 |
|
| 2012 |
Jollivet D, Mary J, Gagnière N, Tanguy A, Fontanillas E, Boutet I, Hourdez S, Segurens B, Weissenbach J, Poch O, Lecompte O. Proteome adaptation to high temperatures in the ectothermic hydrothermal vent Pompeii worm. Plos One. 7: e31150. PMID 22348046 DOI: 10.1371/Journal.Pone.0031150 |
0.325 |
|
| 2012 |
Jaillard C, Mouret A, Niepon ML, Clérin E, Yang Y, Lee-Rivera I, Aït-Ali N, Millet-Puel G, Cronin T, Sedmak T, Raffelsberger W, Kinzel B, Trembleau A, Poch O, Bennett J, et al. Nxnl2 splicing results in dual functions in neuronal cell survival and maintenance of cell integrity. Human Molecular Genetics. 21: 2298-311. PMID 22343139 DOI: 10.1093/Hmg/Dds050 |
0.309 |
|
| 2012 |
Audo I, Bujakowska K, Orhan E, Poloschek CM, Defoort-Dhellemmes S, Drumare I, Kohl S, Luu TD, Lecompte O, Zrenner E, Lancelot ME, Antonio A, Germain A, Michiels C, Audier C, ... ... Poch O, et al. Whole-exome sequencing identifies mutations in GPR179 leading to autosomal-recessive complete congenital stationary night blindness. American Journal of Human Genetics. 90: 321-30. PMID 22325361 DOI: 10.1016/J.Ajhg.2011.12.007 |
0.319 |
|
| 2012 |
Linard B, Nguyen NH, Prosdocimi F, Poch O, Thompson JD. EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data. Evolutionary Bioinformatics Online. 8: 61-77. PMID 22267905 DOI: 10.4137/Ebo.S8814 |
0.351 |
|
| 2012 |
Prosdocimi F, Linard B, Pontarotti P, Poch O, Thompson JD. Controversies in modern evolutionary biology: the imperative for error detection and quality control. Bmc Genomics. 13: 5. PMID 22217008 DOI: 10.1186/1471-2164-13-5 |
0.355 |
|
| 2012 |
Walter V, Nguyen H, Poch O. GEPeTTO : A New System for Gene Prioritization F1000research. 3. DOI: 10.7490/F1000Research.1092294.1 |
0.315 |
|
| 2011 |
Bloch-Zupan A, Jamet X, Etard C, Laugel V, Muller J, Geoffroy V, Strauss JP, Pelletier V, Marion V, Poch O, Strahle U, Stoetzel C, Dollfus H. Homozygosity mapping and candidate prioritization identify mutations, missed by whole-exome sequencing, in SMOC2, causing major dental developmental defects. American Journal of Human Genetics. 89: 773-81. PMID 22152679 DOI: 10.1016/J.Ajhg.2011.11.002 |
0.306 |
|
| 2011 |
Lalevée S, Anno YN, Chatagnon A, Samarut E, Poch O, Laudet V, Benoit G, Lecompte O, Rochette-Egly C. Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp). The Journal of Biological Chemistry. 286: 33322-34. PMID 21803772 DOI: 10.1074/Jbc.M111.263681 |
0.37 |
|
| 2011 |
Thompson JD, Linard B, Lecompte O, Poch O. A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. Plos One. 6: e18093. PMID 21483869 DOI: 10.1371/Journal.Pone.0018093 |
0.419 |
|
| 2011 |
Linard B, Thompson JD, Poch O, Lecompte O. OrthoInspector: comprehensive orthology analysis and visual exploration. Bmc Bioinformatics. 12: 11. PMID 21219603 DOI: 10.1186/1471-2105-12-11 |
0.362 |
|
| 2011 |
Anno YN, Myslinski E, Ngondo-Mbongo RP, Krol A, Poch O, Lecompte O, Carbon P. Genome-wide evidence for an essential role of the human Staf/ZNF143 transcription factor in bidirectional transcription. Nucleic Acids Research. 39: 3116-27. PMID 21177654 DOI: 10.1093/Nar/Gkq1301 |
0.371 |
|
| 2010 |
Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD. IntelliGO: a new vector-based semantic similarity measure including annotation origin. Bmc Bioinformatics. 11: 588. PMID 21122125 DOI: 10.1186/1471-2105-11-588 |
0.33 |
|
| 2010 |
Gagnière N, Jollivet D, Boutet I, Brélivet Y, Busso D, Da Silva C, Gaill F, Higuet D, Hourdez S, Knoops B, Lallier F, Leize-Wagner E, Mary J, Moras D, Perrodou E, ... ... Poch O, et al. Insights into metazoan evolution from Alvinella pompejana cDNAs. Bmc Genomics. 11: 634. PMID 21080938 DOI: 10.1186/1471-2164-11-634 |
0.396 |
|
| 2010 |
Anamika K, Krebs AR, Thompson J, Poch O, Devys D, Tora L. Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases. Epigenetics & Chromatin. 3: 18. PMID 20961410 DOI: 10.1186/1756-8935-3-18 |
0.337 |
|
| 2010 |
Aniba MR, Poch O, Thompson JD. Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. Nucleic Acids Research. 38: 7353-63. PMID 20639539 DOI: 10.1093/Nar/Gkq625 |
0.344 |
|
| 2010 |
Aniba MR, Poch O, Marchler-Bauer A, Thompson JD. AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis. Nucleic Acids Research. 38: 6338-49. PMID 20530533 DOI: 10.1093/Nar/Gkq526 |
0.354 |
|
| 2010 |
Friedrich A, Garnier N, Gagnière N, Nguyen H, Albou LP, Biancalana V, Bettler E, Deléage G, Lecompte O, Muller J, Moras D, Mandel JL, Toursel T, Moulinier L, Poch O. SM2PH-db: an interactive system for the integrated analysis of phenotypic consequences of missense mutations in proteins involved in human genetic diseases. Human Mutation. 31: 127-35. PMID 19921752 DOI: 10.1002/Humu.21155 |
0.362 |
|
| 2010 |
Reichman S, Kalathur RK, Lambard S, Aït-Ali N, Yang Y, Lardenois A, Ripp R, Poch O, Zack DJ, Sahel JA, Léveillard T. The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina. Human Molecular Genetics. 19: 250-61. PMID 19843539 DOI: 10.1093/Hmg/Ddp484 |
0.308 |
|
| 2009 |
Ruano-Rubio V, Poch O, Thompson JD. Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. Bmc Bioinformatics. 10: 383. PMID 19930674 DOI: 10.1186/1471-2105-10-383 |
0.364 |
|
| 2009 |
Gazdag E, Santenard A, Ziegler-Birling C, Altobelli G, Poch O, Tora L, Torres-Padilla ME. TBP2 is essential for germ cell development by regulating transcription and chromatin condensation in the oocyte. Genes & Development. 23: 2210-23. PMID 19759265 DOI: 10.1101/Gad.535209 |
0.303 |
|
| 2009 |
Vetter G, Le Béchec A, Muller J, Muller A, Moes M, Yatskou M, Al Tanoury Z, Poch O, Vallar L, Friederich E. Time-resolved analysis of transcriptional events during SNAI1-triggered epithelial to mesenchymal transition Biochemical and Biophysical Research Communications. 385: 485-491. PMID 19442650 DOI: 10.1016/J.Bbrc.2009.05.025 |
0.32 |
|
| 2009 |
Delfosse V, Girard E, Birck C, Delmarcelle M, Delarue M, Poch O, Schultz P, Mayer C. Structure of the archaeal pab87 peptidase reveals a novel self-compartmentalizing protease family. Plos One. 4: e4712. PMID 19266066 DOI: 10.1371/Journal.Pone.0004712 |
0.32 |
|
| 2009 |
Gallien S, Perrodou E, Carapito C, Deshayes C, Reyrat JM, Van Dorsselaer A, Poch O, Schaeffer C, Lecompte O. Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. Genome Research. 19: 128-35. PMID 18955433 DOI: 10.1101/Gr.081901.108 |
0.413 |
|
| 2008 |
Levasseur A, Pontarotti P, Poch O, Thompson JD. Strategies for reliable exploitation of evolutionary concepts in high throughput biology. Evolutionary Bioinformatics Online. 4: 121-37. PMID 19204813 DOI: 10.4137/Ebo.S597 |
0.366 |
|
| 2008 |
Becker JA, Befort K, Blad C, Filliol D, Ghate A, Dembele D, Thibault C, Koch M, Muller J, Lardenois A, Poch O, Kieffer BL. Transcriptome analysis identifies genes with enriched expression in the mouse central extended amygdala. Neuroscience. 156: 950-65. PMID 18786617 DOI: 10.1016/J.Neuroscience.2008.07.070 |
0.333 |
|
| 2008 |
Lecompte O, Poch O, Laporte J. PtdIns5P regulation through evolution: roles in membrane trafficking? Trends in Biochemical Sciences. 33: 453-60. PMID 18774718 DOI: 10.1016/J.Tibs.2008.07.002 |
0.335 |
|
| 2008 |
Befort K, Filliol D, Ghate A, Darcq E, Matifas A, Muller J, Lardenois A, Thibault C, Dembele D, Le Merrer J, Becker JA, Poch O, Kieffer BL. Mu-opioid receptor activation induces transcriptional plasticity in the central extended amygdala. The European Journal of Neuroscience. 27: 2973-84. PMID 18588537 DOI: 10.1111/J.1460-9568.2008.06273.X |
0.306 |
|
| 2008 |
Kalathur RK, Gagniere N, Berthommier G, Poidevin L, Raffelsberger W, Ripp R, Léveillard T, Poch O. RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina. Bmc Genomics. 9: 208. PMID 18457592 DOI: 10.1186/1471-2164-9-208 |
0.31 |
|
| 2008 |
Perrodou E, Chica C, Poch O, Gibson TJ, Thompson JD. A new protein linear motif benchmark for multiple sequence alignment software. Bmc Bioinformatics. 9: 213. PMID 18439277 DOI: 10.1186/1471-2105-9-213 |
0.373 |
|
| 2008 |
Deshayes C, Perrodou E, Euphrasie D, Frapy E, Poch O, Bifani P, Lecompte O, Reyrat JM. Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences. Bmc Evolutionary Biology. 8: 78. PMID 18325090 DOI: 10.1186/1471-2148-8-78 |
0.311 |
|
| 2008 |
Lagier-Tourenne C, Tazir M, López LC, Quinzii CM, Assoum M, Drouot N, Busso C, Makri S, Ali-Pacha L, Benhassine T, Anheim M, Lynch DR, Thibault C, Plewniak F, Bianchetti L, ... ... Poch O, et al. ADCK3, an ancestral kinase, is mutated in a form of recessive ataxia associated with coenzyme Q10 deficiency. American Journal of Human Genetics. 82: 661-72. PMID 18319074 DOI: 10.1016/J.Ajhg.2007.12.024 |
0.328 |
|
| 2007 |
Bianchetti L, Wu Y, Guerin E, Plewniak F, Poch O. SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages. Nucleic Acids Research. 35: e122. PMID 17884916 DOI: 10.1093/Nar/Gkm648 |
0.306 |
|
| 2007 |
Muller J, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L. Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. Bmc Genomics. 8: 294. PMID 17727702 DOI: 10.1186/1471-2164-8-294 |
0.372 |
|
| 2007 |
Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L. Blast sampling for structural and functional analyses. Bmc Bioinformatics. 8: 62. PMID 17319945 DOI: 10.1186/1471-2105-8-62 |
0.374 |
|
| 2007 |
Deshayes C, Perrodou E, Gallien S, Euphrasie D, Schaeffer C, Van-Dorsselaer A, Poch O, Lecompte O, Reyrat JM. Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? Genome Biology. 8: R20. PMID 17295914 DOI: 10.1186/Gb-2007-8-2-R20 |
0.364 |
|
| 2007 |
Stoetzel C, Muller J, Laurier V, Davis EE, Zaghloul NA, Vicaire S, Jacquelin C, Plewniak F, Leitch CC, Sarda P, Hamel C, de Ravel TJ, Lewis RA, Friederich E, Thibault C, ... ... Poch O, et al. Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome. American Journal of Human Genetics. 80: 1-11. PMID 17160889 DOI: 10.1086/510256 |
0.358 |
|
| 2007 |
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A. PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Research. 35: D815-22. PMID 17135190 DOI: 10.1093/Nar/Gkl935 |
0.413 |
|
| 2006 |
Lardenois A, Chalmel F, Bianchetti L, Sahel JA, Léveillard T, Poch O. PromAn: an integrated knowledge-based web server dedicated to promoter analysis. Nucleic Acids Research. 34: W578-83. PMID 16845074 DOI: 10.1093/Nar/Gkl193 |
0.364 |
|
| 2006 |
Laurier V, Stoetzel C, Muller J, Thibault C, Corbani S, Jalkh N, Salem N, Chouery E, Poch O, Licaire S, Danse JM, Amati-Bonneau P, Bonneau D, Mégarbané A, Mandel JL, et al. Pitfalls of homozygosity mapping: an extended consanguineous Bardet-Biedl syndrome family with two mutant genes (BBS2, BBS10), three mutations, but no triallelism. European Journal of Human Genetics : Ejhg. 14: 1195-203. PMID 16823392 DOI: 10.1038/Sj.Ejhg.5201688 |
0.337 |
|
| 2006 |
Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O. MAGOS: multiple alignment and modelling server. Bioinformatics (Oxford, England). 22: 2164-5. PMID 16820425 DOI: 10.1093/Bioinformatics/Btl349 |
0.35 |
|
| 2006 |
Thompson JD, Muller A, Waterhouse A, Procter J, Barton GJ, Plewniak F, Poch O. MACSIMS: multiple alignment of complete sequences information management system. Bmc Bioinformatics. 7: 318. PMID 16792820 DOI: 10.1186/1471-2105-7-318 |
0.35 |
|
| 2006 |
Stoetzel C, Laurier V, Davis EE, Muller J, Rix S, Badano JL, Leitch CC, Salem N, Chouery E, Corbani S, Jalk N, Vicaire S, Sarda P, Hamel C, Lacombe D, ... ... Poch O, et al. BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus. Nature Genetics. 38: 521-4. PMID 16582908 DOI: 10.1038/Ng1771 |
0.344 |
|
| 2006 |
Schlüter A, Fourcade S, Ripp R, Mandel JL, Poch O, Pujol A. The evolutionary origin of peroxisomes: an ER-peroxisome connection. Molecular Biology and Evolution. 23: 838-45. PMID 16452116 DOI: 10.1093/Molbev/Msj103 |
0.368 |
|
| 2006 |
Abou-Sleymane G, Chalmel F, Helmlinger D, Lardenois A, Thibault C, Weber C, Mérienne K, Mandel JL, Poch O, Devys D, Trottier Y. Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program. Human Molecular Genetics. 15: 691-703. PMID 16434483 DOI: 10.1093/Hmg/Ddi483 |
0.337 |
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| 2006 |
Perrodou E, Deshayes C, Muller J, Schaeffer C, Van Dorsselaer A, Ripp R, Poch O, Reyrat JM, Lecompte O. ICDS database: interrupted CoDing sequences in prokaryotic genomes. Nucleic Acids Research. 34: D338-43. PMID 16381882 DOI: 10.1093/Nar/Gkj060 |
0.384 |
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| 2006 |
Carles A, Millon R, Cromer A, Ganguli G, Lemaire F, Young J, Wasylyk C, Muller D, Schultz I, Rabouel Y, Dembélé D, Zhao C, Marchal P, Ducray C, Bracco L, ... ... Poch O, et al. Head and neck squamous cell carcinoma transcriptome analysis by comprehensive validated differential display. Oncogene. 25: 1821-31. PMID 16261155 DOI: 10.1038/Sj.Onc.1209203 |
0.369 |
|
| 2006 |
Thompson J, Poch O. Multiple Sequence Alignment as a Workbench for Molecular Systems Biology Current Bioinformatics. 1: 95-104. DOI: 10.2174/157489306775330552 |
0.394 |
|
| 2006 |
Stoetzel C, Laurier V, Davis EE, Muller J, Rix S, Badano JL, Leitch CC, Salem N, Chouery E, Corbani S, Jalk N, Vicaire S, Sarda P, Hamel C, Lacombe D, ... ... Poch O, et al. Corrigendum: BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus Nature Genetics. 38: 727-727. DOI: 10.1038/Ng0606-721 |
0.345 |
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| 2005 |
Uhring M, Bey G, Lecompte O, Cavarelli J, Moras D, Poch O. Cloning, purification and crystallization of a Walker-type Pyrococcus abyssi ATPase family member. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 925-7. PMID 16511197 DOI: 10.1107/S174430910502868X |
0.337 |
|
| 2005 |
Muller J, Oma Y, Vallar L, Friederich E, Poch O, Winsor B. Sequence and comparative genomic analysis of actin-related proteins. Molecular Biology of the Cell. 16: 5736-48. PMID 16195354 DOI: 10.1091/Mbc.E05-06-0508 |
0.393 |
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| 2005 |
Bianchetti L, Thompson JD, Lecompte O, Plewniak F, Poch O. vALId: validation of protein sequence quality based on multiple alignment data. Journal of Bioinformatics and Computational Biology. 3: 929-47. PMID 16078368 DOI: 10.1142/S0219720005001326 |
0.402 |
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| 2005 |
Thompson JD, Koehl P, Ripp R, Poch O. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins. 61: 127-36. PMID 16044462 DOI: 10.1002/Prot.20527 |
0.411 |
|
| 2005 |
Thompson JD, Holbrook SR, Katoh K, Koehl P, Moras D, Westhof E, Poch O. MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. Nucleic Acids Research. 33: 4164-71. PMID 16043635 DOI: 10.1093/Nar/Gki735 |
0.4 |
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| 2005 |
Chalmel F, Lardenois A, Thompson JD, Muller J, Sahel JA, Léveillard T, Poch O. GOAnno: GO annotation based on multiple alignment Bioinformatics. 21: 2095-2096. PMID 15647299 DOI: 10.1093/Bioinformatics/Bti252 |
0.333 |
|
| 2004 |
Prigent V, Thierry JC, Poch O, Plewniak F. DbW: automatic update of a functional family-specific multiple alignment. Bioinformatics (Oxford, England). 21: 1437-42. PMID 15598832 DOI: 10.1093/Bioinformatics/Bti218 |
0.384 |
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| 2004 |
Jawhari A, Boussert S, Lamour V, Atkinson RA, Kieffer B, Poch O, Potier N, van Dorsselaer A, Moras D, Poterszman A. Domain architecture of the p62 subunit from the human transcription/repair factor TFIIH deduced by limited proteolysis and mass spectrometry analysis. Biochemistry. 43: 14420-30. PMID 15533047 DOI: 10.1021/Bi048884C |
0.343 |
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| 2004 |
Brelivet Y, Kammerer S, Rochel N, Poch O, Moras D. Signature of the oligomeric behaviour of nuclear receptors at the sequence and structural level Embo Reports. 5: 423-429. PMID 15105832 DOI: 10.1038/Sj.Embor.7400119 |
0.337 |
|
| 2004 |
Thompson JD, Prigent V, Poch O. LEON: multiple aLignment Evaluation Of Neighbours. Nucleic Acids Research. 32: 1298-307. PMID 14982955 DOI: 10.1093/Nar/Gkh294 |
0.4 |
|
| 2004 |
Thompson JD, Thierry JC, Poch O. RASCAL: rapid scanning and correction of multiple sequence alignments. Bioinformatics (Oxford, England). 19: 1155-61. PMID 12801878 DOI: 10.1093/Bioinformatics/Btg133 |
0.312 |
|
| 2003 |
Duval D, Duval G, Kedinger C, Poch O, Boeuf H. The 'PINIT' motif, of a newly identified conserved domain of the PIAS protein family, is essential for nuclear retention of PIAS3L. Febs Letters. 554: 111-8. PMID 14596924 DOI: 10.1016/S0014-5793(03)01116-5 |
0.327 |
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| 2003 |
Cavusoglu N, Thierse D, Mohand-Saïd S, Chalmel F, Poch O, Van-Dorsselaer A, Sahel JA, Léveillard T. Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse. Molecular & Cellular Proteomics : McP. 2: 494-505. PMID 12832458 DOI: 10.1074/Mcp.M300029-Mcp200 |
0.336 |
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| 2003 |
Plewniak F, Bianchetti L, Brelivet Y, Carles A, Chalmel F, Lecompte O, Mochel T, Moulinier L, Muller A, Muller J, Prigent V, Ripp R, Thierry JC, Thompson JD, Wicker N, ... Poch O, et al. PipeAlign: A new toolkit for protein family analysis. Nucleic Acids Research. 31: 3829-32. PMID 12824430 DOI: 10.1093/Nar/Gkg518 |
0.39 |
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| 2003 |
Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, Poch O, Prieur D, Quérellou J, Ripp R, Thierry JC, Van der Oost J, Weissenbach J, Zivanovic Y, Forterre P. An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Molecular Microbiology. 47: 1495-512. PMID 12622808 DOI: 10.1046/J.1365-2958.2003.03381.X |
0.417 |
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| 2003 |
Gozuacik D, Chami M, Lagorce D, Faivre J, Murakami Y, Poch O, Biermann E, Knippers R, Bréchot C, Paterlini-Bréchot P. Identification and functional characterization of a new member of the human Mcm protein family: hMcm8. Nucleic Acids Research. 31: 570-9. PMID 12527764 DOI: 10.1093/Nar/Gkg136 |
0.342 |
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| 2002 |
Lecompte O, Ripp R, Thierry JC, Moras D, Poch O. Comparative analysis of ribosomal proteins in complete genomes: An example of reductive evolution at the domain scale Nucleic Acids Research. 30: 5382-5390. PMID 12490706 DOI: 10.1093/Nar/Gkf693 |
0.383 |
|
| 2002 |
Bianchetti L, Oudet C, Poch O. M13 endopeptidases: New conserved motifs correlated with structure, and simultaneous phylogenetic occurrence of PHEX and the bony fish. Proteins. 47: 481-8. PMID 12001226 DOI: 10.1002/Prot.10075 |
0.358 |
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| 2002 |
Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O. Towards a reliable objective function for multiple sequence alignments. Journal of Molecular Biology. 314: 937-51. PMID 11734009 DOI: 10.1006/Jmbi.2001.5187 |
0.395 |
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| 2001 |
Wicker N, Perrin GR, Thierry JC, Poch O. Secator: a program for inferring protein subfamilies from phylogenetic trees. Molecular Biology and Evolution. 18: 1435-41. PMID 11470834 DOI: 10.1093/Oxfordjournals.Molbev.A003929 |
0.37 |
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| 2001 |
Lecompte O, Thompson JD, Plewniak F, Thierry J, Poch O. Multiple alignment of complete sequences (MACS) in the post-genomic era. Gene. 270: 17-30. PMID 11403999 DOI: 10.1016/S0378-1119(01)00461-9 |
0.411 |
|
| 2001 |
Mayer C, Suck D, Poch O. The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component. Trends in Biochemical Sciences. 26: 143-4. PMID 11246005 DOI: 10.1016/S0968-0004(00)01779-5 |
0.368 |
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| 2001 |
Bahr A, Thompson JD, Thierry JC, Poch O. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Research. 29: 323-6. PMID 11125126 DOI: 10.1093/Nar/29.1.323 |
0.36 |
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| 2001 |
Lecompte O, Ripp R, Puzos-Barbe V, Duprat S, Heilig R, Dietrich J, Thierry J, Poch O. Genome Evolution at the Genus Level: Comparison of Three Complete Genomes of Hyperthermophilic Archaea Genome Research. 11: 981-993. DOI: 10.1101/Gr.165301 |
0.325 |
|
| 2000 |
Thompson JD, Plewniak F, Thierry J, Poch O. DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Research. 28: 2919-26. PMID 10908355 DOI: 10.1093/Nar/28.15.2919 |
0.363 |
|
| 1999 |
Dantonel JC, Wurtz JM, Poch O, Moras D, Tora L. The TBP-like factor: An alternative transcription factor in Metazoa? Trends in Biochemical Sciences. 24: 335-339. PMID 10470030 DOI: 10.1016/S0968-0004(99)01436-X |
0.355 |
|
| 1999 |
Thompson JD, Plewniak F, Poch O. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Research. 27: 2682-90. PMID 10373585 DOI: 10.1093/Nar/27.13.2682 |
0.333 |
|
| 1999 |
Thompson JD, Plewniak F, Poch O. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics (Oxford, England). 15: 87-8. PMID 10068696 DOI: 10.1093/Bioinformatics/15.1.87 |
0.329 |
|
| 1998 |
Davidson I, Romier C, Lavigne AC, Birck C, Mengus G, Poch O, Moras D. Functional and structural analysis of the subunits of human transcription factor TFIID. Cold Spring Harbor Symposia On Quantitative Biology. 63: 233-41. PMID 10384287 DOI: 10.1101/Sqb.1998.63.233 |
0.346 |
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| 1998 |
Poch O, Winsor B. Who's who among the Saccharomyces cerevisiae actin-related proteins? A classification and nomenclature proposal for a large family. Yeast (Chichester, England). 13: 1053-8. PMID 9290209 DOI: 10.1002/(Sici)1097-0061(19970915)13:11<1053::Aid-Yea164>3.0.Co;2-4 |
0.358 |
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| 1997 |
Friant S, Heyman T, Poch O, Wilhelm M, Wilhelm FX. Sequence comparison of the Ty1 and Ty2 elements of the yeast genome supports the structural model of the tRNAiMet-Ty1 RNA reverse transcription initiation complex. Yeast (Chichester, England). 13: 639-45. PMID 9200813 DOI: 10.1002/(Sici)1097-0061(19970615)13:7<639::Aid-Yea143>3.0.Co;2-Y |
0.363 |
|
| 1997 |
Poch O. Conservation of a putative inhibitory domain in the GAL4 family members. Gene. 184: 229-35. PMID 9031633 DOI: 10.1016/S0378-1119(96)00602-6 |
0.312 |
|
| 1996 |
Poch O, Delarue M. Converting sequence block alignments into structural insights. Methods in Enzymology. 266: 662-80. PMID 8743713 DOI: 10.1016/S0076-6879(96)66042-X |
0.365 |
|
| 1995 |
de Murcia G, Schreiber V, Molinete M, Saulier B, Poch O, Masson M, Niedergang C, Ménissier de Murcia J. Structure and function of poly(ADP-ribose) polymerase. Molecular and Cellular Biochemistry. 138: 15-24. PMID 7898458 DOI: 10.1007/Bf00928438 |
0.305 |
|
| 1994 |
Poch O, Schwob E, de Fraipont F, Camasses A, Bordonné R, Martin RP. RPK1, an essential yeast protein kinase involved in the regulation of the onset of mitosis, shows homology to mammalian dual-specificity kinases. Molecular & General Genetics : Mgg. 243: 641-53. PMID 8028580 DOI: 10.1007/Bf00279573 |
0.335 |
|
| 1990 |
Eriani G, Delarue M, Poch O, Gangloff J, Moras D. Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature. 347: 203-6. PMID 2203971 DOI: 10.1038/347203A0 |
0.344 |
|
| 1990 |
Poch O, Blumberg BM, Bougueleret L, Tordo N. Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. The Journal of General Virology. 1153-62. PMID 2161049 DOI: 10.1099/0022-1317-71-5-1153 |
0.317 |
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| 1989 |
Poch O, Sauvaget I, Delarue M, Tordo N. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. The Embo Journal. 8: 3867-3874. DOI: 10.1002/J.1460-2075.1989.Tb08565.X |
0.327 |
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| 1988 |
Tordo N, Poch O, Ermine A, Keith G, Rougeon F. Completion of the rabies virus genome sequence determination: highly conserved domains among the L (polymerase) proteins of unsegmented negative-strand RNA viruses. Virology. 165: 565-76. PMID 3407152 DOI: 10.1016/0042-6822(88)90600-9 |
0.376 |
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| 1988 |
Poch O, Tordo N, Keith G. Sequence of the 3386 3' nucleotides of the genome of the AVO1 strain rabies virus: structural similarities in the protein regions involved in transcription. Biochimie. 70: 1019-29. PMID 3147698 DOI: 10.1016/0300-9084(88)90265-9 |
0.403 |
|
| 1986 |
Tordo N, Poch O, Ermine A, Keith G, Rougeon F. Walking along the rabies genome: is the large G-L intergenic region a remnant gene? Proceedings of the National Academy of Sciences of the United States of America. 83: 3914-8. PMID 3459163 DOI: 10.1073/Pnas.83.11.3914 |
0.379 |
|
| 1986 |
Tordo N, Poch O, Ermine A, Keith G. Primary structure of leader RNA and nucleoprotein genes of the rabies genome: segmented homology with VSV. Nucleic Acids Research. 14: 2671-83. PMID 3008096 DOI: 10.1093/Nar/14.6.2671 |
0.37 |
|
| 1985 |
Tordo N, Poch O, Keith G, Ermine A. Nucleotidic sequence of the rabies pasteur virus genome Virus Research. 3: 48. DOI: 10.1016/0168-1702(85)90347-8 |
0.319 |
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