| Year |
Citation |
Score |
| 2018 |
Hodos R, Zhang P, Lee HC, Duan Q, Wang Z, Clark NR, Ma'ayan A, Wang F, Kidd B, Hu J, Sontag D, Dudley J. Cell-specific prediction and application of drug-induced gene expression profiles. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 32-43. PMID 29218867 |
0.772 |
|
| 2017 |
Niepel M, Hafner M, Duan Q, Wang Z, Paull EO, Chung M, Lu X, Stuart JM, Golub TR, Subramanian A, Ma'ayan A, Sorger PK. Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling. Nature Communications. 8: 1186. PMID 29084964 DOI: 10.1038/S41467-017-01383-W |
0.718 |
|
| 2017 |
Sangodkar J, Perl A, Tohme R, Kiselar J, Kastrinsky DB, Zaware N, Izadmehr S, Mazhar S, Wiredja DD, O'Connor CM, Hoon D, Dhawan NS, Schlatzer D, Yao S, Leonard D, ... ... Duan Q, et al. Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth. The Journal of Clinical Investigation. PMID 28504649 DOI: 10.1172/Jci89548 |
0.533 |
|
| 2017 |
Niepel M, Hafner M, Duan Q, Subramanian A, Ma'ayan A, Sorger PK. Abstract IA05: New methods and better theory for pre-clinical cancer pharmacogenomics Cancer Research. 77. DOI: 10.1158/1538-7445.Epso16-Ia05 |
0.629 |
|
| 2016 |
Duan Q, Reid SP, Clark NR, Wang Z, Fernandez NF, Rouillard AD, Readhead B, Tritsch SR, Hodos R, Hafner M, Niepel M, Sorger PK, Dudley JT, Bavari S, Panchal RG, et al. L1000CDS(2): LINCS L1000 characteristic direction signatures search engine. Npj Systems Biology and Applications. 2. PMID 28413689 DOI: 10.1038/npjsba.2016.15 |
0.758 |
|
| 2016 |
Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, et al. Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nature Communications. 7: 12846. PMID 27667448 DOI: 10.7490/F1000Research.1113422.1 |
0.778 |
|
| 2016 |
Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. PMID 27141961 DOI: 10.1093/Nar/Gkw377 |
0.71 |
|
| 2016 |
Dohlman A, Zaman S, Duan Q, Wang Z, Iyengar R, Abernethy D, Ma'ayan A. Predicting adverse cardiovascular events for tyrosine kinase inhibitors from molecular features F1000research. 5. DOI: 10.7490/F1000Research.1113434.1 |
0.649 |
|
| 2016 |
Hafner M, Niepel M, Duan Q, Paull E, Stuart J, Subramanian A, Ma’ayan A, Sorger PK. Abstract 788: Transcriptional landscape of drug response guides the design of potent and synergistic drug combinations Cancer Research. 76: 788-788. DOI: 10.1158/1538-7445.Am2016-788 |
0.483 |
|
| 2015 |
Hafner M, Niepel M, Duan Q, Lu X, Subramanian A, Ma'ayan A, Sorger PK. Abstract PR16: Transcriptional landscape of drug response guides the design of specific and potent drug combinations Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-Pr16 |
0.629 |
|
| 2015 |
Hafner M, Niepel M, Duan Q, Paull E, Stuart J, Subramanian A, Ma'ayan A, Sorger P. Abstract B20: Transcriptional landscape of drug response guides the design of specific and potent drug combinations Molecular Cancer Therapeutics. 14. DOI: 10.1158/1535-7163.Targ-15-B20 |
0.629 |
|
| 2014 |
Ma'ayan A, Duan Q. A blueprint of cell identity. Nature Biotechnology. 32: 1007-8. PMID 25299921 DOI: 10.1038/Nbt.3035 |
0.581 |
|
| 2014 |
Ma'ayan A, Rouillard AD, Clark NR, Wang Z, Duan Q, Kou Y. Lean Big Data integration in systems biology and systems pharmacology. Trends in Pharmacological Sciences. 35: 450-60. PMID 25109570 DOI: 10.1016/J.Tips.2014.07.001 |
0.769 |
|
| 2014 |
Duan Q, Wang Z, Fernandez NF, Rouillard AD, Tan CM, Benes CH, Ma'ayan A. Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets. Bioinformatics (Oxford, England). 30: 3289-90. PMID 25100688 DOI: 10.1093/Bioinformatics/Btu526 |
0.683 |
|
| 2014 |
Duan Q, Flynn C, Niepel M, Hafner M, Muhlich JL, Fernandez NF, Rouillard AD, Tan CM, Chen EY, Golub TR, Sorger PK, Subramanian A, Ma'ayan A. LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures. Nucleic Acids Research. 42: W449-60. PMID 24906883 DOI: 10.1093/Nar/Gku476 |
0.657 |
|
| 2014 |
Clark NR, Hu KS, Feldmann AS, Kou Y, Chen EY, Duan Q, Ma'ayan A. The characteristic direction: A geometrical approach to identify differentially expressed genes Bmc Bioinformatics. 15. PMID 24650281 DOI: 10.1186/1471-2105-15-79 |
0.762 |
|
| 2014 |
Baker SJ, Ma'ayan A, Lieu YK, John P, Reddy MV, Chen EY, Duan Q, Snoeck HW, Reddy EP. B-myb is an essential regulator of hematopoietic stem cell and myeloid progenitor cell development. Proceedings of the National Academy of Sciences of the United States of America. 111: 3122-7. PMID 24516162 DOI: 10.1073/Pnas.1315464111 |
0.548 |
|
| 2013 |
Jakubzick C, Gautier EL, Gibbings SL, Sojka DK, Schlitzer A, Johnson TE, Ivanov S, Duan Q, Bala S, Condon T, van Rooijen N, Grainger JR, Belkaid Y, Ma'ayan A, Riches DW, et al. Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes. Immunity. 39: 599-610. PMID 24012416 DOI: 10.1016/J.Immuni.2013.08.007 |
0.522 |
|
| 2013 |
Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bmc Bioinformatics. 14: 128. PMID 23586463 DOI: 10.1186/1471-2105-14-128 |
0.766 |
|
| 2013 |
Kou Y, Chen EY, Clark NR, Duan Q, Tan CM, Ma'ayan A. ChEA2: Gene-set libraries from ChIP-X experiments to decode the transcription regulome Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8127: 416-430. DOI: 10.1007/978-3-642-40511-2_30 |
0.761 |
|
| Show low-probability matches. |